TCONS_00001229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001229
Unique NameTCONS_00001229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001229 ID=TCONS_00001229|Name=TCONS_00001229|organism=Clytia hemisphaerica|type=transcript|length=2416bp
GTGATGTTCCCATACATTCTGATTATACTAAATTTACTAATTGTATCACG
CTGTCCAAGCAGCTGATTCTTTTAtcatttgtatttattttatttagaca
taaaaaataaaaaacaatatgCAGCTTAAACACTTAAAAACTACACTGGC
TCCCCAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACA
ATACCAAAATGGCAATAGTATCAACTGATCGtgtagttgttctttttgat
gAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAA
AACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCTCCTGATT
CCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGTATACAAG
ATTGGTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCA
ACAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATATTA
TTTTTGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaaaaaccaac
aaatcacaAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTGT
CAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTG
TCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGGGCAAGTT
GTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATCAT
TGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGGCGGG
TATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACA
GTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGA
TAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAAT
CTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGG
AAAAGAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGTGGAGTTGA
ACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAA
TGACTTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGGCATCAGGA
GCCAGAGTTGTTTTAAAATCACATTATGGATACGAGATTGATGAAGTGAA
AATAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAAACATTGC
TTGTGGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCATGGCATAAT
TCAGGTGGAAATGAGAAGttcttctttgaaaatgaaacaGTTTGTATGGT
ATTCAATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAATGAAGTGT
TAGCTACAGTCAGAACAGAATTCATGAACCCTCATCTTATAAGCGTACGT
TTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATTGGGTTA
TTTGATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTCAGGGATGG
TTGTAGCCAATATTTCACATGATgtcaaaattgactggttagaGATGAAT
GAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGTTATTATT
GGCAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATATTGCTCTT
ATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAGCAGAAGC
GATCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGACTATCGT
TCCCATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAA
ACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAA
GGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGGC
TGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAAGCTATGT
GGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTTCATCGCC
GAAAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACG
TGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTA
TGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTC
AAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGAT
GGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCG
AAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAA
TATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTT
GAATTTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147707-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001229 ID=TCONS_00001229|Name=TCONS_00001229|organism=Clytia hemisphaerica|type=transcript|length=10859bp|location=Sequence derived from alignment at sc0000007:1136849..1147707- (Clytia hemisphaerica)
GTGATGTTCCCATACATTCTGATTATACTAAATTTACTAATTGTATCACG CTGTCCAAGCAGCTGATTCTTTTATCATTTGTATTTATTTTATTTAGACA TAAAAAATAAAAAACAATATGCAGCTTAAACACTTAAAAACTACACTGGC TCCCCAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTTTTCTCTTC ATATAAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAAATATAACC ATTGCTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGACTGTTTAAT CCTTTCTAGTATGATTTATTGTTATACCTTTAAATTGTAATTTTTATGAA GGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAATACCA AAATGGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTGATGAACAT GGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAGTAAG CTCTATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAAAAGTTATC ACATGATATCGATTACAATATGGGATGTATTATATTAAGTTAAACTTTTT CCTCATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAACTTTGAACA AGAAAAATATATCCAATATTGTGCGAGTAAGTTTGATAATTGGTTTAGCA TTAACTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGTGTCTTTTT CTATGTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTATTTTGATGA AATTAACACCAAAACATTTATAAAAAATCCAAAGGTCATTAAAATGTTAA AAACATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTATCAGCCAA TCAGATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATTATTTTAGT AGTCACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCTTCATTTAT TGATTTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTTCTAAATGA TTGTTCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATT TTCTCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTT TTGTATACAAGATTGGTGACGAATGGTAAGACTAAGAACATTGATCTTTC TAAAAACTGAAACATCTACAGTCAGATATTATTTACTTATATTTGAAGAT CGAACATAATATGAAAATGTTATTTATATATATTAATTAATTTTTGATTT TATTTTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAACAGGT AAAGTATCTTTTTAAATTGATTATTATTTCATCACAAGAGAAATTTTTTT AACATTTGATACCATAGTATTGTATTATCCTATACTGTGTTAAATGAATG ATTTTACTTTACACATCTGCTATAATAATATAATTTAATGAGGATCAATT TTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAAT ATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTTGACATTTT GACTTTTATGATGGATGATATCTCTTTTGGGATTCAAATTTTATAAATTG ATAAAGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATCTATAGGGC TGACAAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCTAATGTCAC CCCATAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTTTTTGAAAA CAAATAATTAATTTTACTATACTCATGAATTTTAAAAATCAAAAGGTGAT CCTAAAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGATGGTATTGG TAGGAAAGGGAGATCTACTTTTTAACCTGGAAATATATATTGACGATATA AAGCATACAAACACCTAAAATTTTAGATCACACTTCAAATGATTGAGTTT GAGAATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAATTTCCATTT TTTTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCACAAACTGTC TATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTGGCATTCTG TTTTAATTACATAAATGATTTTCAAACTATAAAATGAAAGCAATATTACT ATTATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTGAGTACAGC TTTCAAGAAACTACTTTAACAATTCATATTTAAGCATTTTCACAACAGAT AATAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAAACATTTTC TTGACTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCTTTGCCATC TGTTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGA TGGAGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCC AGGTATTTTACATATTAAATGTTAAAACATTTAAAGTAGACAAACTAAAC TAATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACTAGAAGAGT CAATTGCACTTCAGACAAACAATCATTCCAAAGAATAATTTGCAAATTTC TTTTTTTTTGAAGTGCATTACACAAAGAATAATACAAAGAATTATATGCT ATCCTAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCATAGGGGCAA GTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCNTACAAGA GAAAATTTTTTAACATTTGATACCACAGTATTGTATTATCCTATACTGTG TTAAATGAATGATTTTACTTTACACATCTGCTATAATAATATAATTTAAT GAGAATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCC AGAAAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACT TATGACATTTTGACTTTTATTATATCATGATATAATGATGGATGATATCT CTTTTAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGTTGTCTGTT TGACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATTGCAAAAAAA GTGTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCATTTCTTAGC TGAACAGTTAATTTATTTTTTTGAAAACATATAATTAATTTTACTATACT CGTGAATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGCTTTCAAGA TGGTTACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCTACTTTTTA ACCTGGAAATATATATTGACGATATAAAGCATACAAACACCTAAAATTTT AGATCACACTTCAAATGATTGAGTTTGAGAATGATTATTTTCTTCATCTT TCTGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGATGGCAAGTC TAAAAACCAACAAATCACAAACTGTCTATGGAACTGGTATCCATTGTATA TCTTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAATGATTTTCA AACTATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTTGAAGCTTG TAAATGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTTTAACAATT CATATTTAAGCATTTTCACAACAGATAATAAACTAAAAATTTTTTTGAAA AAGTTTCATTTAATATAAACATTTTCTTGACTGGACAAATCCAATAACTG TTTCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTCCTGATGGG AAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGATATATGTT TGAAGATACTGGGACAGGTTTGACCCAGGTATTTTACATATTAAATGTTA AAACATTTAAAGTAGACAAACTAAACTAATATTAGGTATATTTCTTTTTG AGAAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGACAAACAATC ATTCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGCATTACACA AAGAATAATACAAAGAATTATATGCTATCCTAATATTCAAATCTCAAGAT TGGTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCTGTCCACCG TATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTGATAAAAG AATTGTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTATGTTTCAC GAGAAAATCATTTTTATTTAACAAATGATTAATCCTAATATTTCATTTCC CTAAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATTCAAAAGAT GATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAGTC AGTGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTGGAGTCCCC GAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATAATTTATAC ACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCTGT AAGTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATATAGGTTTTA ATACATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTCAATTAGTA TTCTACATGCAAATATAAAGAATTTTTTTAAATGGTATTTACAAATATAT CATAATACAGTAGCTAAATCTTACTGAATAATATTATTTCTGACTTCAGG GCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGAGAAGATCT ATTTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGCCAGGTAAA ATGAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTCAACCCTTT CAGACCCGGTACACACGATTTAAATCTGCCAAAATACCAAGTCCTGACCA CTTGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGTACAAAAAT ATCTTTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTTAAAACCTT TTATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGAAAGGTTAA GAAAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTAAAAAATTG TCCAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGGAACATATA ACATAGTTGAAAATAACACATCATCTTTCTTATGAAAATTTCTGCCAACT GGCCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCGCCGCTGTG AGGAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTGCTCTCTAA AGAGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTTCTCGACTG ACTAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCTAGCTGGTT GCAATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGATTCAAGCGC AGGCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCACAATTATA AAAAAATATTTAGTTATTTTCACTAACATTACAAATACAAAGAAACTTTG TTATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAAAATTTGGC ATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGGTTTGTA TATAAATAATTTTTATAAGTAGAAAATCTATCATCAATATTTCTGCCTAA TCAACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTTATATTTCT TGGCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAAGTGAAAAT AATGGGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAAT CATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGTT TTGTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATTTAACAAAT GATTAATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGCGGGTATTA CAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGTTGC AATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAGAT TACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTAAA CCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGAAAAG AGATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTCTTATTTTT TGTCCTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTGACTTACAT ATGGATGAAAAGTTTCAATTACTATTCTACATGCAAATATAAAGAATTTT TTTAAATGGTATTTACAAATATATCATAATACAGTAGCTACATCTTACTG AATAATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAGTTGAACTG TTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATGAC TTATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTATACTTTTG AAGATATTAACCCTTCAACCCTTTCAGACCCGGTACACACGATTTAAATC TGCCAAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCATACACCGGA TGCTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAAAAACCATT GCCTAACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAATTTGGAAAA AATGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAATCTGTATT TTGTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATTTTCTCTGT CTGTGCGAGAGTGTGGAACATATAACATAGTTGAAAATAACACATCATCT TTCTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAAAATGAATT TAATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGTTAGCAAAG GAAAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTTTCGGTTCT CTAGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCCTTGTTTTT TTTTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAAAGAAATGT TCTGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGAATGGCCTT TTTTGAATGAAATGCACAATTATAAAAAAATATTTAGTTATTTTCACTAA CATTACAAATACAAAGAAACTTTGTTATTATTAATGCTAACTGTTGATTT CTAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTTTTAAAAT CACATTATGGATACGAGGTTTGTATATAAATAATTTTTATAAGTAGAAAA TCTATCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAATCTGTAAT ATCATATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCTTGCTGATG TTTTTAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATTTCTTGTTG GACACACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAAACAAGCTT AGTGAGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAATATCATAA GATCTTTCAAGTGACATTATGGAACATAAAAAATAACAGAACTTGATTTT GATAATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGCATAATTCA GGTGGAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGTTTGTTTAA AATTCAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAAGTAGATTA CTTCAAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGCCACTGCTA AAATCATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATGTGTTACTT TGTTATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGCAGGAGAAT TATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGTCAGAACA GAATTCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAATGCAGATA TGAAACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGAATTTGATT TTTGAATAGTCTATTCCATTAAACAAATTTCTTTAGATATTTCAGAATAA TTTACCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCGGAAAGAAT TGAAACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAACTAGACTGG ACGCTAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTTAACTTTTT CAGCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAA AATTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTAAGTAAACG TTTTGTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTTCTCATTTC TATCGGGTGAATACAGATTTGAAATATTTGGGCTATTATGCTAAGCTCAG TTGTAAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAATTTCTTTA ATTTTCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATATTTCACATG ATGTCAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCTTATTGTCT CTAAGTTATGAATTTCCAAGATAATATATTTATATTTAGATGCAAATCTC AAGAGTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTATAGATGAA TGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGGTAAGTA ATTTAGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTTGTTTTAAA GTGTGAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACACTTACCTCT CAACTTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAAAACCACTA TTTCTACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGTG GTAGCTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATTGAATCACC TGAACGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTTTGTTCATT TCCTCTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAAAAACTATT TTTTATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGACTTGTAATT TGAGGGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCTATGGCCTA AATGCTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCGAAAAATGA GGGTATTAAATCATCATAAAGATATCATAAAGAAATCTTTCTTTTATCAA TTTATTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGTTTCCAAGA AAGGTGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGTTCGCCTGA GCTTACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACAAGAAATCT GGGAGCAACTCACAAATTTGCAATTCCAGACCCTTGATCAATGAAAGCTT CAATCAAATATGAAGACTTGGCAAATCGATTTTATATTATTTTCTCATGA TAAAAAATTACATTAATTGACTTTGTGACCCTTGTTTTACACGGTTTAGC CTACGATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATTTCAAATCA AAGTTGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTCCTTGCATG TTTAGGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAACGTG ATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAGGGCT AATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGTTTGTCT TATTGGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAATGCTGCAG CAAATTTTTTAACATAAACAAACTTATTAAGATAAGGGTTATTTTTTATT GAGATTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCTGTCGTCTT TTCTTCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATAAAATTGTA TTTTGTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAA ACAGAAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGA GCTTTTCATCGCCGAAAGGTAAGACATAAATATGATCCAACAATCATGAT TCAATGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTTAAGAGGAT TCTGTAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCTTTGTAGGT GTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGGAATC AACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGTATCA TCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAACTTG CAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGAGATG TACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAGCCAA AAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATATTTGA TGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAATTTA GTTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001229-exon-sc0000007-1575043694:1147551..1147707TCONS_00001229-exon-sc0000007-1575043694:1147551..1147707Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1147213..1147356TCONS_00001229-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1146533..1146645TCONS_00001229-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1146360..1146399TCONS_00001229-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1146129..1146197TCONS_00001229-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1144144..1144223TCONS_00001229-exon-sc0000007-1575043694:1144144..1144223Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1143780..1143867TCONS_00001229-exon-sc0000007-1575043694:1143780..1143867Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1143435..1143537TCONS_00001229-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1141386..1141618TCONS_00001229-exon-sc0000007-1575043694:1141386..1141618Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1141089..1141184TCONS_00001229-exon-sc0000007-1575043694:1141089..1141184Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1140241..1140303TCONS_00001229-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1140002..1140100TCONS_00001229-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1139822..1139875TCONS_00001229-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1139532..1139635TCONS_00001229-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1139169..1139254TCONS_00001229-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1138935..1138999TCONS_00001229-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1138765..1138812TCONS_00001229-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1138480..1138647TCONS_00001229-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1137666..1137802TCONS_00001229-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1137340..1137447TCONS_00001229-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1575043694:1136849..1137209TCONS_00001229-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1147551..1147707TCONS_00001229-exon-sc0000007-1510915933:1147551..1147707Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1147213..1147356TCONS_00001229-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1146533..1146645TCONS_00001229-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1146360..1146399TCONS_00001229-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1146129..1146197TCONS_00001229-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1144144..1144223TCONS_00001229-exon-sc0000007-1510915933:1144144..1144223Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1143780..1143867TCONS_00001229-exon-sc0000007-1510915933:1143780..1143867Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1143435..1143537TCONS_00001229-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1141386..1141618TCONS_00001229-exon-sc0000007-1510915933:1141386..1141618Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1141089..1141184TCONS_00001229-exon-sc0000007-1510915933:1141089..1141184Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1140241..1140303TCONS_00001229-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1140002..1140100TCONS_00001229-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1139822..1139875TCONS_00001229-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1139532..1139635TCONS_00001229-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1139169..1139254TCONS_00001229-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1138935..1138999TCONS_00001229-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1138765..1138812TCONS_00001229-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1138480..1138647TCONS_00001229-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1137666..1137802TCONS_00001229-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1137340..1137447TCONS_00001229-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1510915933:1136849..1137209TCONS_00001229-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1147551..1147707TCONS_00001229-exon-sc0000007-1491911889:1147551..1147707Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1147213..1147356TCONS_00001229-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1146533..1146645TCONS_00001229-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1146360..1146399TCONS_00001229-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1146129..1146197TCONS_00001229-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1144144..1144223TCONS_00001229-exon-sc0000007-1491911889:1144144..1144223Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1143780..1143867TCONS_00001229-exon-sc0000007-1491911889:1143780..1143867Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1143435..1143537TCONS_00001229-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1141386..1141618TCONS_00001229-exon-sc0000007-1491911889:1141386..1141618Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1141089..1141184TCONS_00001229-exon-sc0000007-1491911889:1141089..1141184Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1140241..1140303TCONS_00001229-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1140002..1140100TCONS_00001229-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1139822..1139875TCONS_00001229-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1139532..1139635TCONS_00001229-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1139169..1139254TCONS_00001229-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1138935..1138999TCONS_00001229-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1138765..1138812TCONS_00001229-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1138480..1138647TCONS_00001229-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1137666..1137802TCONS_00001229-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1137340..1137447TCONS_00001229-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001229-exon-sc0000007-1491911889:1136849..1137209TCONS_00001229-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147707 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.902705 0.193874 1.92727 0.37994 0.0889258 3.63248 0.496634 0.0656088 1.75125e-07 1.39998 1.15971 0.628623 0.528051 0.000161722 0.0686766 0.220691 0.980201 0.00369514 1.32972 0.33065 1.01992 0 0.0172018 6.89728e-05 3.48404 0.624252 0.00281359 3.52334e-06 0 1.1156
Blast
BLAST of TCONS_00001229 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.1 bits (2818), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 2
Query:  119 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2395
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760          
The following BLAST results are available for this feature:
BLAST of TCONS_00001229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
back to top