TCONS_00001227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001227
Unique NameTCONS_00001227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001227 ID=TCONS_00001227|Name=TCONS_00001227|organism=Clytia hemisphaerica|type=transcript|length=2370bp
CACGCTGTCCAAGCAGCTGATTCTTTTAtcatttgtatttattttattta
gacataaaaaataaaaaacaatatgCAGCTTAAACACTTAAAAACTACAC
TGGCTCCCCAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCT
AACAATACCAAAATGGCAATAGTATCAACTGATCGtgtagttgttctttt
tgatgAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATG
CTAAAACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCTCCT
GATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGTATA
CAAGATTGGTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAGTTTC
TCCAACAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATAT
ATTATTTTTGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaaaaac
caacaaatcacaAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGT
GTGTCAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCC
ATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGGGCA
AGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAA
TCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGG
CGGGTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTT
CACAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTT
ATGATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAA
GAATCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTC
TTGGAAAAGAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGTGGAG
TTGAACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTT
GAAATGACTTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGGCATC
AGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGATTGATGAAG
TGAAAATAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAAACA
TTGCTTGTGGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCATGGCA
TAATTCAGGTGGAAATGAGAAGttcttctttgaaaatgaaacaGTTTGTA
TGGTATTCAATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAATGAA
GTGTTAGCTACAGTCAGAACAGAATTCATGAACCCTCATCTTATAAGCGT
ACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATTGG
GTTATTTGATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTCAGGG
ATGGTTGTAGCCAATATTTCACATGATgtcaaaattgactggttagaGAT
GAATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGTTAT
TATTGGCAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATATTGC
TCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAGCAG
AAGCGATCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGACTA
TCGTTCCCATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAA
ACAAACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGA
CGAAGGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTA
GGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAAGCT
ATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTTCAT
CGCCGAAAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATT
TACGTGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGAT
CCTATGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACA
ATTCAAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAG
CGATGGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATC
GCCGAAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTT
GCAATATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAA
CCTTGAATTTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147661-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001227 ID=TCONS_00001227|Name=TCONS_00001227|organism=Clytia hemisphaerica|type=transcript|length=10813bp|location=Sequence derived from alignment at sc0000007:1136849..1147661- (Clytia hemisphaerica)
CACGCTGTCCAAGCAGCTGATTCTTTTATCATTTGTATTTATTTTATTTA GACATAAAAAATAAAAAACAATATGCAGCTTAAACACTTAAAAACTACAC TGGCTCCCCAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTTTTCT CTTCATATAAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAAATAT AACCATTGCTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGACTGTT TAATCCTTTCTAGTATGATTTATTGTTATACCTTTAAATTGTAATTTTTA TGAAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAAT ACCAAAATGGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTGATGA ACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAG TAAGCTCTATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAAAAGT TATCACATGATATCGATTACAATATGGGATGTATTATATTAAGTTAAACT TTTTCCTCATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAACTTTG AACAAGAAAAATATATCCAATATTGTGCGAGTAAGTTTGATAATTGGTTT AGCATTAACTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGTGTCT TTTTCTATGTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTATTTTG ATGAAATTAACACCAAAACATTTATAAAAAATCCAAAGGTCATTAAAATG TTAAAAACATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTATCAG CCAATCAGATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATTATTT TAGTAGTCACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCTTCAT TTATTGATTTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTTCTAA ATGATTGTTCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAG CATTTTCTCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATT GTTTTTGTATACAAGATTGGTGACGAATGGTAAGACTAAGAACATTGATC TTTCTAAAAACTGAAACATCTACAGTCAGATATTATTTACTTATATTTGA AGATCGAACATAATATGAAAATGTTATTTATATATATTAATTAATTTTTG ATTTTATTTTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAAC AGGTAAAGTATCTTTTTAAATTGATTATTATTTCATCACAAGAGAAATTT TTTTAACATTTGATACCATAGTATTGTATTATCCTATACTGTGTTAAATG AATGATTTTACTTTACACATCTGCTATAATAATATAATTTAATGAGGATC AATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAAT CAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTTGACA TTTTGACTTTTATGATGGATGATATCTCTTTTGGGATTCAAATTTTATAA ATTGATAAAGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATCTATA GGGCTGACAAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCTAATG TCACCCCATAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTTTTTG AAAACAAATAATTAATTTTACTATACTCATGAATTTTAAAAATCAAAAGG TGATCCTAAAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGATGGTA TTGGTAGGAAAGGGAGATCTACTTTTTAACCTGGAAATATATATTGACGA TATAAAGCATACAAACACCTAAAATTTTAGATCACACTTCAAATGATTGA GTTTGAGAATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAATTTCC ATTTTTTTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCACAAAC TGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTGGCAT TCTGTTTTAATTACATAAATGATTTTCAAACTATAAAATGAAAGCAATAT TACTATTATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTGAGTA CAGCTTTCAAGAAACTACTTTAACAATTCATATTTAAGCATTTTCACAAC AGATAATAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAAACAT TTTCTTGACTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCTTTGC CATCTGTTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATG CAGATGGAGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTG ACCCAGGTATTTTACATATTAAATGTTAAAACATTTAAAGTAGACAAACT AAACTAATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACTAGAA GAGTCAATTGCACTTCAGACAAACAATCATTCCAAAGAATAATTTGCAAA TTTCTTTTTTTTTGAAGTGCATTACACAAAGAATAATACAAAGAATTATA TGCTATCCTAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCATAGGG GCAAGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCNTAC AAGAGAAAATTTTTTAACATTTGATACCACAGTATTGTATTATCCTATAC TGTGTTAAATGAATGATTTTACTTTACACATCTGCTATAATAATATAATT TAATGAGAATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGC CCCCAGAAAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGT GACTTATGACATTTTGACTTTTATTATATCATGATATAATGATGGATGAT ATCTCTTTTAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGTTGTC TGTTTGACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATTGCAAA AAAAGTGTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCATTTCT TAGCTGAACAGTTAATTTATTTTTTTGAAAACATATAATTAATTTTACTA TACTCGTGAATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGCTTTC AAGATGGTTACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCTACTT TTTAACCTGGAAATATATATTGACGATATAAAGCATACAAACACCTAAAA TTTTAGATCACACTTCAAATGATTGAGTTTGAGAATGATTATTTTCTTCA TCTTTCTGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGATGGCA AGTCTAAAAACCAACAAATCACAAACTGTCTATGGAACTGGTATCCATTG TATATCTTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAATGATT TTCAAACTATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTTGAAG CTTGTAAATGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTTTAAC AATTCATATTTAAGCATTTTCACAACAGATAATAAACTAAAAATTTTTTT GAAAAAGTTTCATTTAATATAAACATTTTCTTGACTGGACAAATCCAATA ACTGTTTCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTCCTGA TGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGATATA TGTTTGAAGATACTGGGACAGGTTTGACCCAGGTATTTTACATATTAAAT GTTAAAACATTTAAAGTAGACAAACTAAACTAATATTAGGTATATTTCTT TTTGAGAAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGACAAAC AATCATTCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGCATTA CACAAAGAATAATACAAAGAATTATATGCTATCCTAATATTCAAATCTCA AGATTGGTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCTGTCC ACCGTATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTGATA AAAGAATTGTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTATGTT TCACGAGAAAATCATTTTTATTTAACAAATGATTAATCCTAATATTTCAT TTCCCTAAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATTCAAA AGATGATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGTGGTC AGTCAGTGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTGGAGT CCCCGAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATAATTT ATACACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTTTGTG CTGTAAGTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATATAGGT TTTAATACATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTCAATT AGTATTCTACATGCAAATATAAAGAATTTTTTTAAATGGTATTTACAAAT ATATCATAATACAGTAGCTAAATCTTACTGAATAATATTATTTCTGACTT CAGGGCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGAGAAG ATCTATTTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGCCAGG TAAAATGAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTCAACC CTTTCAGACCCGGTACACACGATTTAAATCTGCCAAAATACCAAGTCCTG ACCACTTGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGTACAA AAATATCTTTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTTAAAA CCTTTTATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGAAAGG TTAAGAAAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTAAAAA ATTGTCCAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGGAACA TATAACATAGTTGAAAATAACACATCATCTTTCTTATGAAAATTTCTGCC AACTGGCCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCGCCGC TGTGAGGAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTGCTCT CTAAAGAGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTTCTCG ACTGACTAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCTAGCT GGTTGCAATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGATTCAA GCGCAGGCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCACAAT TATAAAAAAATATTTAGTTATTTTCACTAACATTACAAATACAAAGAAAC TTTGTTATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAAAATT TGGCATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGGTT TGTATATAAATAATTTTTATAAGTAGAAAATCTATCATCAATATTTCTGC CTAATCAACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTTATAT TTCTTGGCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAAGTGA AAATAATGGGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGCTCAT CAATCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAA GGTTTTGTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATTTAAC AAATGATTAATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGCGGGT ATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAG TTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGAT AGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATC TAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGA AAAGAGATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTCTTAT TTTTTGTCCTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTGACTT ACATATGGATGAAAAGTTTCAATTACTATTCTACATGCAAATATAAAGAA TTTTTTTAAATGGTATTTACAAATATATCATAATACAGTAGCTACATCTT ACTGAATAATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAGTTGA ACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAA TGACTTATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTATACT TTTGAAGATATTAACCCTTCAACCCTTTCAGACCCGGTACACACGATTTA AATCTGCCAAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCATACAC CGGATGCTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAAAAAC CATTGCCTAACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAATTTGG AAAAAATGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAATCTG TATTTTGTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATTTTCT CTGTCTGTGCGAGAGTGTGGAACATATAACATAGTTGAAAATAACACATC ATCTTTCTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAAAATG AATTTAATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGTTAGC AAAGGAAAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTTTCGG TTCTCTAGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCCTTGT TTTTTTTTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAAAGAA ATGTTCTGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGAATGG CCTTTTTTGAATGAAATGCACAATTATAAAAAAATATTTAGTTATTTTCA CTAACATTACAAATACAAAGAAACTTTGTTATTATTAATGCTAACTGTTG ATTTCTAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTTTTA AAATCACATTATGGATACGAGGTTTGTATATAAATAATTTTTATAAGTAG AAAATCTATCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAATCTG TAATATCATATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCTTGCT GATGTTTTTAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATTTCTT GTTGGACACACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAAACAA GCTTAGTGAGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAATATC ATAAGATCTTTCAAGTGACATTATGGAACATAAAAAATAACAGAACTTGA TTTTGATAATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGCATAA TTCAGGTGGAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGTTTGT TTAAAATTCAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAAGTAG ATTACTTCAAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGCCACT GCTAAAATCATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATGTGTT ACTTTGTTATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGCAGGA GAATTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGTCAG AACAGAATTCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAATGCA GATATGAAACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGAATTT GATTTTTGAATAGTCTATTCCATTAAACAAATTTCTTTAGATATTTCAGA ATAATTTACCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCGGAAA GAATTGAAACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAACTAGA CTGGACGCTAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTTAACT TTTTCAGCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAAT AAAAAATTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTAAGTA AACGTTTTGTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTTCTCA TTTCTATCGGGTGAATACAGATTTGAAATATTTGGGCTATTATGCTAAGC TCAGTTGTAAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAATTTC TTTAATTTTCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATATTTCA CATGATGTCAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCTTATT GTCTCTAAGTTATGAATTTCCAAGATAATATATTTATATTTAGATGCAAA TCTCAAGAGTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTATAGA TGAATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGGTA AGTAATTTAGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTTGTTT TAAAGTGTGAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACACTTAC CTCTCAACTTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAAAACC ACTATTTCTACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGT TGTGGTAGCTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATTGAAT CACCTGAACGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTTTGTT CATTTCCTCTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAAAAAC TATTTTTTATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGACTTGT AATTTGAGGGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCTATGG CCTAAATGCTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCGAAAA ATGAGGGTATTAAATCATCATAAAGATATCATAAAGAAATCTTTCTTTTA TCAATTTATTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGTTTCC AAGAAAGGTGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGTTCGC CTGAGCTTACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACAAGAA ATCTGGGAGCAACTCACAAATTTGCAATTCCAGACCCTTGATCAATGAAA GCTTCAATCAAATATGAAGACTTGGCAAATCGATTTTATATTATTTTCTC ATGATAAAAAATTACATTAATTGACTTTGTGACCCTTGTTTTACACGGTT TAGCCTACGATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATTTCAA ATCAAAGTTGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTCCTTG CATGTTTAGGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAA CGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAG GGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGTTT GTCTTATTGGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAATGCT GCAGCAAATTTTTTAACATAAACAAACTTATTAAGATAAGGGTTATTTTT TATTGAGATTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCTGTCG TCTTTTCTTCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATAAAAT TGTATTTTGTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACC TGAAACAGAAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATA AAGAGCTTTTCATCGCCGAAAGGTAAGACATAAATATGATCCAACAATCA TGATTCAATGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTTAAGA GGATTCTGTAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCTTTGT AGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGG AATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGT ATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAA CTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGA GATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAG CCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATAT TTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAA TTTAGTTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001227-exon-sc0000007-1575043694:1147551..1147661TCONS_00001227-exon-sc0000007-1575043694:1147551..1147661Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1147213..1147356TCONS_00001227-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1146533..1146645TCONS_00001227-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1146360..1146399TCONS_00001227-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1146129..1146197TCONS_00001227-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1145570..1145649TCONS_00001227-exon-sc0000007-1575043694:1145570..1145649Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1143780..1143867TCONS_00001227-exon-sc0000007-1575043694:1143780..1143867Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1143435..1143537TCONS_00001227-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1143110..1143342TCONS_00001227-exon-sc0000007-1575043694:1143110..1143342Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1142813..1142908TCONS_00001227-exon-sc0000007-1575043694:1142813..1142908Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1141965..1142027TCONS_00001227-exon-sc0000007-1575043694:1141965..1142027Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1140002..1140100TCONS_00001227-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1139822..1139875TCONS_00001227-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1139532..1139635TCONS_00001227-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1139169..1139254TCONS_00001227-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1138935..1138999TCONS_00001227-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1138765..1138812TCONS_00001227-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1138480..1138647TCONS_00001227-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1137666..1137802TCONS_00001227-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1137340..1137447TCONS_00001227-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1575043694:1136849..1137209TCONS_00001227-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1147551..1147661TCONS_00001227-exon-sc0000007-1510915933:1147551..1147661Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1147213..1147356TCONS_00001227-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1146533..1146645TCONS_00001227-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1146360..1146399TCONS_00001227-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1146129..1146197TCONS_00001227-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1145570..1145649TCONS_00001227-exon-sc0000007-1510915933:1145570..1145649Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1143780..1143867TCONS_00001227-exon-sc0000007-1510915933:1143780..1143867Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1143435..1143537TCONS_00001227-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1143110..1143342TCONS_00001227-exon-sc0000007-1510915933:1143110..1143342Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1142813..1142908TCONS_00001227-exon-sc0000007-1510915933:1142813..1142908Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1141965..1142027TCONS_00001227-exon-sc0000007-1510915933:1141965..1142027Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1140002..1140100TCONS_00001227-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1139822..1139875TCONS_00001227-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1139532..1139635TCONS_00001227-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1139169..1139254TCONS_00001227-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1138935..1138999TCONS_00001227-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1138765..1138812TCONS_00001227-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1138480..1138647TCONS_00001227-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1137666..1137802TCONS_00001227-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1137340..1137447TCONS_00001227-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1510915933:1136849..1137209TCONS_00001227-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1147551..1147661TCONS_00001227-exon-sc0000007-1491911889:1147551..1147661Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1147213..1147356TCONS_00001227-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1146533..1146645TCONS_00001227-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1146360..1146399TCONS_00001227-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1146129..1146197TCONS_00001227-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1145570..1145649TCONS_00001227-exon-sc0000007-1491911889:1145570..1145649Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1143780..1143867TCONS_00001227-exon-sc0000007-1491911889:1143780..1143867Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1143435..1143537TCONS_00001227-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1143110..1143342TCONS_00001227-exon-sc0000007-1491911889:1143110..1143342Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1142813..1142908TCONS_00001227-exon-sc0000007-1491911889:1142813..1142908Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1141965..1142027TCONS_00001227-exon-sc0000007-1491911889:1141965..1142027Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1140002..1140100TCONS_00001227-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1139822..1139875TCONS_00001227-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1139532..1139635TCONS_00001227-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1139169..1139254TCONS_00001227-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1138935..1138999TCONS_00001227-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1138765..1138812TCONS_00001227-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1138480..1138647TCONS_00001227-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1137666..1137802TCONS_00001227-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1137340..1137447TCONS_00001227-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001227-exon-sc0000007-1491911889:1136849..1137209TCONS_00001227-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147661 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.88364 0.000536587 2.3971 2.03944 0.767807 0.766905 1.07515 0.397021 2.55427 1.50813 0.0704841 0.447511 4.98521 2.62332 1.61229 3.47578 0.0273626 0.465404 5.09568 0.038086 0.457238 5.12601 0.158663 2.21408 9.06469 3.41732 1.12526 5.16637 0.0219367 1.83874
Blast
BLAST of TCONS_00001227 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.87 bits (2820), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 1
Query:   73 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2349
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760          
The following BLAST results are available for this feature:
BLAST of TCONS_00001227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
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