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TCONS_00001225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001225
Unique NameTCONS_00001225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001225 ID=TCONS_00001225|Name=TCONS_00001225|organism=Clytia hemisphaerica|type=transcript|length=2364bp
GTCCAAGCAGCTGATTCTTTTAtcatttgtatttattttatttagacata
aaaaataaaaaacaatatgCAGCTTAAACACTTAAAAACTACACTGGCTC
CCCAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAAT
ACCAAAATGGCAATAGTATCAACTGATCGtgtagttgttctttttgatgA
ACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAA
CTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCTCCTGATTCC
ACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGTATACAAGAT
TGGTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAAC
AGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATATTATT
TTTGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaaaaaccaacaa
atcacaAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCA
GTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTC
AGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGGGCAAGTTGT
GAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATCATTG
CAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGGCGGGTA
TTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGT
TGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATA
GATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCT
AAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGAA
AAGAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGTGGAGTTGAAC
TGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATG
ACTTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGGCATCAGGAGC
CAGAGTTGTTTTAAAATCACATTATGGATACGAGATTGATGAAGTGAAAA
TAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAAACATTGCTT
GTGGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCATGGCATAATTC
AGGTGGAAATGAGAAGttcttctttgaaaatgaaacaGTTTGTATGGTAT
TCAATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTA
GCTACAGTCAGAACAGAATTCATGAACCCTCATCTTATAAGCGTACGTTT
GAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATTGGGTTATT
TGATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTCAGGGATGGTT
GTAGCCAATATTTCACATGATgtcaaaattgactggttagaGATGAATGA
GACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGTTATTATTGG
CAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATATTGCTCTTAT
GTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAGCAGAAGCGA
TCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGACTATCGTTC
CCATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAAC
GTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAGG
GCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGGCTG
TTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAAGCTATGTGG
AAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTTCATCGCCGA
AAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTG
GAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATG
TATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAA
ACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGG
AGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAA
GCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATA
TTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGA
ATTTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147655-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001225 ID=TCONS_00001225|Name=TCONS_00001225|organism=Clytia hemisphaerica|type=transcript|length=10807bp|location=Sequence derived from alignment at sc0000007:1136849..1147655- (Clytia hemisphaerica)
GTCCAAGCAGCTGATTCTTTTATCATTTGTATTTATTTTATTTAGACATA AAAAATAAAAAACAATATGCAGCTTAAACACTTAAAAACTACACTGGCTC CCCAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTTTTCTCTTCAT ATAAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAAATATAACCAT TGCTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGACTGTTTAATCC TTTCTAGTATGATTTATTGTTATACCTTTAAATTGTAATTTTTATGAAGG ATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAATACCAAA ATGGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTGATGAACATGG AGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAGTAAGCT CTATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAAAAGTTATCAC ATGATATCGATTACAATATGGGATGTATTATATTAAGTTAAACTTTTTCC TCATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAACTTTGAACAAG AAAAATATATCCAATATTGTGCGAGTAAGTTTGATAATTGGTTTAGCATT AACTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGTGTCTTTTTCT ATGTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTATTTTGATGAAA TTAACACCAAAACATTTATAAAAAATCCAAAGGTCATTAAAATGTTAAAA ACATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTATCAGCCAATC AGATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATTATTTTAGTAG TCACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCTTCATTTATTG ATTTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTTCTAAATGATT GTTCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTT CTCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTT GTATACAAGATTGGTGACGAATGGTAAGACTAAGAACATTGATCTTTCTA AAAACTGAAACATCTACAGTCAGATATTATTTACTTATATTTGAAGATCG AACATAATATGAAAATGTTATTTATATATATTAATTAATTTTTGATTTTA TTTTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAACAGGTAA AGTATCTTTTTAAATTGATTATTATTTCATCACAAGAGAAATTTTTTTAA CATTTGATACCATAGTATTGTATTATCCTATACTGTGTTAAATGAATGAT TTTACTTTACACATCTGCTATAATAATATAATTTAATGAGGATCAATTTT TACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATAT ATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTTGACATTTTGA CTTTTATGATGGATGATATCTCTTTTGGGATTCAAATTTTATAAATTGAT AAAGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATCTATAGGGCTG ACAAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCTAATGTCACCC CATAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTTTTTGAAAACA AATAATTAATTTTACTATACTCATGAATTTTAAAAATCAAAAGGTGATCC TAAAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGATGGTATTGGTA GGAAAGGGAGATCTACTTTTTAACCTGGAAATATATATTGACGATATAAA GCATACAAACACCTAAAATTTTAGATCACACTTCAAATGATTGAGTTTGA GAATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAATTTCCATTTTT TTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCACAAACTGTCTA TGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTGGCATTCTGTT TTAATTACATAAATGATTTTCAAACTATAAAATGAAAGCAATATTACTAT TATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTGAGTACAGCTT TCAAGAAACTACTTTAACAATTCATATTTAAGCATTTTCACAACAGATAA TAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAAACATTTTCTT GACTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCTTTGCCATCTG TTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATG GAGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAG GTATTTTACATATTAAATGTTAAAACATTTAAAGTAGACAAACTAAACTA ATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACTAGAAGAGTCA ATTGCACTTCAGACAAACAATCATTCCAAAGAATAATTTGCAAATTTCTT TTTTTTTGAAGTGCATTACACAAAGAATAATACAAAGAATTATATGCTAT CCTAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCATAGGGGCAAGT TGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCNTACAAGAGA AAATTTTTTAACATTTGATACCACAGTATTGTATTATCCTATACTGTGTT AAATGAATGATTTTACTTTACACATCTGCTATAATAATATAATTTAATGA GAATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAG AAAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTA TGACATTTTGACTTTTATTATATCATGATATAATGATGGATGATATCTCT TTTAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGTTGTCTGTTTG ACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATTGCAAAAAAAGT GTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCATTTCTTAGCTG AACAGTTAATTTATTTTTTTGAAAACATATAATTAATTTTACTATACTCG TGAATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGCTTTCAAGATG GTTACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCTACTTTTTAAC CTGGAAATATATATTGACGATATAAAGCATACAAACACCTAAAATTTTAG ATCACACTTCAAATGATTGAGTTTGAGAATGATTATTTTCTTCATCTTTC TGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGATGGCAAGTCTA AAAACCAACAAATCACAAACTGTCTATGGAACTGGTATCCATTGTATATC TTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAATGATTTTCAAA CTATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTTGAAGCTTGTA AATGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTTTAACAATTCA TATTTAAGCATTTTCACAACAGATAATAAACTAAAAATTTTTTTGAAAAA GTTTCATTTAATATAAACATTTTCTTGACTGGACAAATCCAATAACTGTT TCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTCCTGATGGGAA AGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGATATATGTTTG AAGATACTGGGACAGGTTTGACCCAGGTATTTTACATATTAAATGTTAAA ACATTTAAAGTAGACAAACTAAACTAATATTAGGTATATTTCTTTTTGAG AAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGACAAACAATCAT TCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGCATTACACAAA GAATAATACAAAGAATTATATGCTATCCTAATATTCAAATCTCAAGATTG GTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCTGTCCACCGTA TGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTGATAAAAGAA TTGTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTATGTTTCACGA GAAAATCATTTTTATTTAACAAATGATTAATCCTAATATTTCATTTCCCT AAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATTCAAAAGATGA TGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAG TGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTGGAGTCCCCGA AGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATAATTTATACAC CATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCTGTAA GTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATATAGGTTTTAAT ACATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTCAATTAGTATT CTACATGCAAATATAAAGAATTTTTTTAAATGGTATTTACAAATATATCA TAATACAGTAGCTAAATCTTACTGAATAATATTATTTCTGACTTCAGGGC ACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGAGAAGATCTAT TTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGCCAGGTAAAAT GAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTCAACCCTTTCA GACCCGGTACACACGATTTAAATCTGCCAAAATACCAAGTCCTGACCACT TGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGTACAAAAATAT CTTTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTTAAAACCTTTT ATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGAAAGGTTAAGA AAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTAAAAAATTGTC CAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGGAACATATAAC ATAGTTGAAAATAACACATCATCTTTCTTATGAAAATTTCTGCCAACTGG CCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCGCCGCTGTGAG GAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTGCTCTCTAAAG AGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTTCTCGACTGAC TAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCTAGCTGGTTGC AATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGATTCAAGCGCAG GCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCACAATTATAAA AAAATATTTAGTTATTTTCACTAACATTACAAATACAAAGAAACTTTGTT ATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAAAATTTGGCAT CAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGGTTTGTATA TAAATAATTTTTATAAGTAGAAAATCTATCATCAATATTTCTGCCTAATC AACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTTATATTTCTTG GCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAAGTGAAAATAA TGGGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATCA TTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGTTTT GTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATTTAACAAATGA TTAATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGCGGGTATTACA AAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGTTGCAA TAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAGATTA CGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTAAACC AAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGAAAAGAG ATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTCTTATTTTTTG TCCTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTGACTTACATAT GGATGAAAAGTTTCAATTACTATTCTACATGCAAATATAAAGAATTTTTT TAAATGGTATTTACAAATATATCATAATACAGTAGCTACATCTTACTGAA TAATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAGTTGAACTGTT TGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATGACTT ATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTATACTTTTGAA GATATTAACCCTTCAACCCTTTCAGACCCGGTACACACGATTTAAATCTG CCAAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCATACACCGGATG CTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAAAAACCATTGC CTAACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAATTTGGAAAAAA TGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAATCTGTATTTT GTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATTTTCTCTGTCT GTGCGAGAGTGTGGAACATATAACATAGTTGAAAATAACACATCATCTTT CTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAAAATGAATTTA ATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGTTAGCAAAGGA AAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTTTCGGTTCTCT AGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCCTTGTTTTTTT TTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAAAGAAATGTTC TGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGAATGGCCTTTT TTGAATGAAATGCACAATTATAAAAAAATATTTAGTTATTTTCACTAACA TTACAAATACAAAGAAACTTTGTTATTATTAATGCTAACTGTTGATTTCT AGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTTTTAAAATCA CATTATGGATACGAGGTTTGTATATAAATAATTTTTATAAGTAGAAAATC TATCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAATCTGTAATAT CATATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCTTGCTGATGTT TTTAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATTTCTTGTTGGA CACACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAAACAAGCTTAG TGAGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAATATCATAAGA TCTTTCAAGTGACATTATGGAACATAAAAAATAACAGAACTTGATTTTGA TAATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGCATAATTCAGG TGGAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGTTTGTTTAAAA TTCAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAAGTAGATTACT TCAAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGCCACTGCTAAA ATCATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATGTGTTACTTTG TTATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGCAGGAGAATTA TCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGTCAGAACAGA ATTCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAATGCAGATATG AAACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGAATTTGATTTT TGAATAGTCTATTCCATTAAACAAATTTCTTTAGATATTTCAGAATAATT TACCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCGGAAAGAATTG AAACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAACTAGACTGGAC GCTAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTTAACTTTTTCA GCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAA TTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTAAGTAAACGTT TTGTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTTCTCATTTCTA TCGGGTGAATACAGATTTGAAATATTTGGGCTATTATGCTAAGCTCAGTT GTAAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAATTTCTTTAAT TTTCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATATTTCACATGAT GTCAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCTTATTGTCTCT AAGTTATGAATTTCCAAGATAATATATTTATATTTAGATGCAAATCTCAA GAGTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTATAGATGAATG AGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGGTAAGTAAT TTAGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTTGTTTTAAAGT GTGAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACACTTACCTCTCA ACTTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAAAACCACTATT TCTACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGT AGCTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATTGAATCACCTG AACGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTTTGTTCATTTC CTCTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAAAAACTATTTT TTATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGACTTGTAATTTG AGGGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCTATGGCCTAAA TGCTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCGAAAAATGAGG GTATTAAATCATCATAAAGATATCATAAAGAAATCTTTCTTTTATCAATT TATTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGTTTCCAAGAAA GGTGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGTTCGCCTGAGC TTACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACAAGAAATCTGG GAGCAACTCACAAATTTGCAATTCCAGACCCTTGATCAATGAAAGCTTCA ATCAAATATGAAGACTTGGCAAATCGATTTTATATTATTTTCTCATGATA AAAAATTACATTAATTGACTTTGTGACCCTTGTTTTACACGGTTTAGCCT ACGATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATTTCAAATCAAA GTTGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTCCTTGCATGTT TAGGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAACGTGAT CGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAGGGCTAA TCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGTTTGTCTTA TTGGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAATGCTGCAGCA AATTTTTTAACATAAACAAACTTATTAAGATAAGGGTTATTTTTTATTGA GATTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCTGTCGTCTTTT CTTCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATAAAATTGTATT TTGTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAAC AGAAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGC TTTTCATCGCCGAAAGGTAAGACATAAATATGATCCAACAATCATGATTC AATGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTTAAGAGGATTC TGTAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCTTTGTAGGTGT TTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGGAATCAA CGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGTATCATC CGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAACTTGCA GAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGAGATGTA CCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAGCCAAAA GACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATATTTGATG AAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAATTTAGT TAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001225-exon-sc0000007-1575043694:1147551..1147655TCONS_00001225-exon-sc0000007-1575043694:1147551..1147655Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1147213..1147356TCONS_00001225-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1146533..1146645TCONS_00001225-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1146360..1146399TCONS_00001225-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1146129..1146197TCONS_00001225-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1145570..1145649TCONS_00001225-exon-sc0000007-1575043694:1145570..1145649Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1143780..1143867TCONS_00001225-exon-sc0000007-1575043694:1143780..1143867Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1143435..1143537TCONS_00001225-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1143110..1143342TCONS_00001225-exon-sc0000007-1575043694:1143110..1143342Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1142813..1142908TCONS_00001225-exon-sc0000007-1575043694:1142813..1142908Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1140241..1140303TCONS_00001225-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1140002..1140100TCONS_00001225-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1139822..1139875TCONS_00001225-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1139532..1139635TCONS_00001225-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1139169..1139254TCONS_00001225-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1138935..1138999TCONS_00001225-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1138765..1138812TCONS_00001225-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1138480..1138647TCONS_00001225-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1137666..1137802TCONS_00001225-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1137340..1137447TCONS_00001225-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1136849..1137209TCONS_00001225-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1147551..1147655TCONS_00001225-exon-sc0000007-1510915933:1147551..1147655Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1147213..1147356TCONS_00001225-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1146533..1146645TCONS_00001225-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1146360..1146399TCONS_00001225-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1146129..1146197TCONS_00001225-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1145570..1145649TCONS_00001225-exon-sc0000007-1510915933:1145570..1145649Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1143780..1143867TCONS_00001225-exon-sc0000007-1510915933:1143780..1143867Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1143435..1143537TCONS_00001225-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1143110..1143342TCONS_00001225-exon-sc0000007-1510915933:1143110..1143342Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1142813..1142908TCONS_00001225-exon-sc0000007-1510915933:1142813..1142908Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1140241..1140303TCONS_00001225-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1140002..1140100TCONS_00001225-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1139822..1139875TCONS_00001225-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1139532..1139635TCONS_00001225-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1139169..1139254TCONS_00001225-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1138935..1138999TCONS_00001225-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1138765..1138812TCONS_00001225-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1138480..1138647TCONS_00001225-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1137666..1137802TCONS_00001225-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1137340..1137447TCONS_00001225-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1136849..1137209TCONS_00001225-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1147551..1147655TCONS_00001225-exon-sc0000007-1491911889:1147551..1147655Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1147213..1147356TCONS_00001225-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1146533..1146645TCONS_00001225-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1146360..1146399TCONS_00001225-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1146129..1146197TCONS_00001225-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1145570..1145649TCONS_00001225-exon-sc0000007-1491911889:1145570..1145649Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1143780..1143867TCONS_00001225-exon-sc0000007-1491911889:1143780..1143867Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1143435..1143537TCONS_00001225-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1143110..1143342TCONS_00001225-exon-sc0000007-1491911889:1143110..1143342Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1142813..1142908TCONS_00001225-exon-sc0000007-1491911889:1142813..1142908Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1140241..1140303TCONS_00001225-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1140002..1140100TCONS_00001225-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1139822..1139875TCONS_00001225-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1139532..1139635TCONS_00001225-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1139169..1139254TCONS_00001225-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1138935..1138999TCONS_00001225-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1138765..1138812TCONS_00001225-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1138480..1138647TCONS_00001225-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1137666..1137802TCONS_00001225-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1137340..1137447TCONS_00001225-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1136849..1137209TCONS_00001225-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147655 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.156168 0.018127 0.197964 1.85433 3.43288 1.46569 4.65006 3.60397 1.50251 0.147292 1.88515 0.981098 0.0849496 0.115445 0.0853724 0.000960111 1.05928 0.140729 0.000936373 1.58494 0.0368945 0.453312 0.0479448 0.550063 2.39998 4.28327 0.00231638 0.0218884 0.865916 0.745913
Blast
BLAST of TCONS_00001225 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1091.26 bits (2821), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 1
Query:   67 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2343
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760          
The following BLAST results are available for this feature:
BLAST of TCONS_00001225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
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