TCONS_00001225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001225
Unique NameTCONS_00001225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001225 ID=TCONS_00001225|Name=TCONS_00001225|organism=Clytia hemisphaerica|type=transcript|length=2364bp
GTCCAAGCAGCTGATTCTTTTAtcatttgtatttattttatttagacata
aaaaataaaaaacaatatgCAGCTTAAACACTTAAAAACTACACTGGCTC
CCCAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAAT
ACCAAAATGGCAATAGTATCAACTGATCGtgtagttgttctttttgatgA
ACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAA
CTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCTCCTGATTCC
ACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGTATACAAGAT
TGGTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAAC
AGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATATTATT
TTTGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaaaaaccaacaa
atcacaAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCA
GTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTC
AGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGGGCAAGTTGT
GAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATCATTG
CAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGGCGGGTA
TTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGT
TGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATA
GATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCT
AAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGAA
AAGAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGTGGAGTTGAAC
TGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATG
ACTTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGGCATCAGGAGC
CAGAGTTGTTTTAAAATCACATTATGGATACGAGATTGATGAAGTGAAAA
TAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAAACATTGCTT
GTGGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCATGGCATAATTC
AGGTGGAAATGAGAAGttcttctttgaaaatgaaacaGTTTGTATGGTAT
TCAATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTA
GCTACAGTCAGAACAGAATTCATGAACCCTCATCTTATAAGCGTACGTTT
GAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATTGGGTTATT
TGATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTCAGGGATGGTT
GTAGCCAATATTTCACATGATgtcaaaattgactggttagaGATGAATGA
GACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGTTATTATTGG
CAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATATTGCTCTTAT
GTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAGCAGAAGCGA
TCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGACTATCGTTC
CCATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAAC
GTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAGG
GCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGGCTG
TTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAAGCTATGTGG
AAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTTCATCGCCGA
AAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTG
GAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATG
TATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAA
ACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGG
AGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAA
GCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATA
TTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGA
ATTTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147655-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001225 ID=TCONS_00001225|Name=TCONS_00001225|organism=Clytia hemisphaerica|type=transcript|length=10807bp|location=Sequence derived from alignment at sc0000007:1136849..1147655- (Clytia hemisphaerica)
GTCCAAGCAGCTGATTCTTTTATCATTTGTATTTATTTTATTTAGACATA
AAAAATAAAAAACAATATGCAGCTTAAACACTTAAAAACTACACTGGCTC
CCCAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTTTTCTCTTCAT
ATAAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAAATATAACCAT
TGCTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGACTGTTTAATCC
TTTCTAGTATGATTTATTGTTATACCTTTAAATTGTAATTTTTATGAAGG
ATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAATACCAAA
ATGGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTGATGAACATGG
AGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAGTAAGCT
CTATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAAAAGTTATCAC
ATGATATCGATTACAATATGGGATGTATTATATTAAGTTAAACTTTTTCC
TCATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAACTTTGAACAAG
AAAAATATATCCAATATTGTGCGAGTAAGTTTGATAATTGGTTTAGCATT
AACTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGTGTCTTTTTCT
ATGTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTATTTTGATGAAA
TTAACACCAAAACATTTATAAAAAATCCAAAGGTCATTAAAATGTTAAAA
ACATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTATCAGCCAATC
AGATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATTATTTTAGTAG
TCACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCTTCATTTATTG
ATTTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTTCTAAATGATT
GTTCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTT
CTCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTT
GTATACAAGATTGGTGACGAATGGTAAGACTAAGAACATTGATCTTTCTA
AAAACTGAAACATCTACAGTCAGATATTATTTACTTATATTTGAAGATCG
AACATAATATGAAAATGTTATTTATATATATTAATTAATTTTTGATTTTA
TTTTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAACAGGTAA
AGTATCTTTTTAAATTGATTATTATTTCATCACAAGAGAAATTTTTTTAA
CATTTGATACCATAGTATTGTATTATCCTATACTGTGTTAAATGAATGAT
TTTACTTTACACATCTGCTATAATAATATAATTTAATGAGGATCAATTTT
TACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATAT
ATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTTGACATTTTGA
CTTTTATGATGGATGATATCTCTTTTGGGATTCAAATTTTATAAATTGAT
AAAGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATCTATAGGGCTG
ACAAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCTAATGTCACCC
CATAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTTTTTGAAAACA
AATAATTAATTTTACTATACTCATGAATTTTAAAAATCAAAAGGTGATCC
TAAAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGATGGTATTGGTA
GGAAAGGGAGATCTACTTTTTAACCTGGAAATATATATTGACGATATAAA
GCATACAAACACCTAAAATTTTAGATCACACTTCAAATGATTGAGTTTGA
GAATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAATTTCCATTTTT
TTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCACAAACTGTCTA
TGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTGGCATTCTGTT
TTAATTACATAAATGATTTTCAAACTATAAAATGAAAGCAATATTACTAT
TATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTGAGTACAGCTT
TCAAGAAACTACTTTAACAATTCATATTTAAGCATTTTCACAACAGATAA
TAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAAACATTTTCTT
GACTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCTTTGCCATCTG
TTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATG
GAGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAG
GTATTTTACATATTAAATGTTAAAACATTTAAAGTAGACAAACTAAACTA
ATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACTAGAAGAGTCA
ATTGCACTTCAGACAAACAATCATTCCAAAGAATAATTTGCAAATTTCTT
TTTTTTTGAAGTGCATTACACAAAGAATAATACAAAGAATTATATGCTAT
CCTAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCATAGGGGCAAGT
TGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCNTACAAGAGA
AAATTTTTTAACATTTGATACCACAGTATTGTATTATCCTATACTGTGTT
AAATGAATGATTTTACTTTACACATCTGCTATAATAATATAATTTAATGA
GAATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAG
AAAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTA
TGACATTTTGACTTTTATTATATCATGATATAATGATGGATGATATCTCT
TTTAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGTTGTCTGTTTG
ACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATTGCAAAAAAAGT
GTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCATTTCTTAGCTG
AACAGTTAATTTATTTTTTTGAAAACATATAATTAATTTTACTATACTCG
TGAATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGCTTTCAAGATG
GTTACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCTACTTTTTAAC
CTGGAAATATATATTGACGATATAAAGCATACAAACACCTAAAATTTTAG
ATCACACTTCAAATGATTGAGTTTGAGAATGATTATTTTCTTCATCTTTC
TGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGATGGCAAGTCTA
AAAACCAACAAATCACAAACTGTCTATGGAACTGGTATCCATTGTATATC
TTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAATGATTTTCAAA
CTATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTTGAAGCTTGTA
AATGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTTTAACAATTCA
TATTTAAGCATTTTCACAACAGATAATAAACTAAAAATTTTTTTGAAAAA
GTTTCATTTAATATAAACATTTTCTTGACTGGACAAATCCAATAACTGTT
TCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTCCTGATGGGAA
AGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGATATATGTTTG
AAGATACTGGGACAGGTTTGACCCAGGTATTTTACATATTAAATGTTAAA
ACATTTAAAGTAGACAAACTAAACTAATATTAGGTATATTTCTTTTTGAG
AAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGACAAACAATCAT
TCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGCATTACACAAA
GAATAATACAAAGAATTATATGCTATCCTAATATTCAAATCTCAAGATTG
GTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCTGTCCACCGTA
TGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTGATAAAAGAA
TTGTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTATGTTTCACGA
GAAAATCATTTTTATTTAACAAATGATTAATCCTAATATTTCATTTCCCT
AAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATTCAAAAGATGA
TGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAG
TGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTGGAGTCCCCGA
AGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATAATTTATACAC
CATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCTGTAA
GTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATATAGGTTTTAAT
ACATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTCAATTAGTATT
CTACATGCAAATATAAAGAATTTTTTTAAATGGTATTTACAAATATATCA
TAATACAGTAGCTAAATCTTACTGAATAATATTATTTCTGACTTCAGGGC
ACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGAGAAGATCTAT
TTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGCCAGGTAAAAT
GAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTCAACCCTTTCA
GACCCGGTACACACGATTTAAATCTGCCAAAATACCAAGTCCTGACCACT
TGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGTACAAAAATAT
CTTTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTTAAAACCTTTT
ATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGAAAGGTTAAGA
AAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTAAAAAATTGTC
CAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGGAACATATAAC
ATAGTTGAAAATAACACATCATCTTTCTTATGAAAATTTCTGCCAACTGG
CCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCGCCGCTGTGAG
GAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTGCTCTCTAAAG
AGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTTCTCGACTGAC
TAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCTAGCTGGTTGC
AATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGATTCAAGCGCAG
GCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCACAATTATAAA
AAAATATTTAGTTATTTTCACTAACATTACAAATACAAAGAAACTTTGTT
ATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAAAATTTGGCAT
CAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGGTTTGTATA
TAAATAATTTTTATAAGTAGAAAATCTATCATCAATATTTCTGCCTAATC
AACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTTATATTTCTTG
GCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAAGTGAAAATAA
TGGGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATCA
TTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGTTTT
GTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATTTAACAAATGA
TTAATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGCGGGTATTACA
AAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGTTGCAA
TAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAGATTA
CGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTAAACC
AAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGAAAAGAG
ATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTCTTATTTTTTG
TCCTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTGACTTACATAT
GGATGAAAAGTTTCAATTACTATTCTACATGCAAATATAAAGAATTTTTT
TAAATGGTATTTACAAATATATCATAATACAGTAGCTACATCTTACTGAA
TAATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAGTTGAACTGTT
TGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATGACTT
ATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTATACTTTTGAA
GATATTAACCCTTCAACCCTTTCAGACCCGGTACACACGATTTAAATCTG
CCAAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCATACACCGGATG
CTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAAAAACCATTGC
CTAACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAATTTGGAAAAAA
TGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAATCTGTATTTT
GTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATTTTCTCTGTCT
GTGCGAGAGTGTGGAACATATAACATAGTTGAAAATAACACATCATCTTT
CTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAAAATGAATTTA
ATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGTTAGCAAAGGA
AAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTTTCGGTTCTCT
AGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCCTTGTTTTTTT
TTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAAAGAAATGTTC
TGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGAATGGCCTTTT
TTGAATGAAATGCACAATTATAAAAAAATATTTAGTTATTTTCACTAACA
TTACAAATACAAAGAAACTTTGTTATTATTAATGCTAACTGTTGATTTCT
AGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTTTTAAAATCA
CATTATGGATACGAGGTTTGTATATAAATAATTTTTATAAGTAGAAAATC
TATCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAATCTGTAATAT
CATATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCTTGCTGATGTT
TTTAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATTTCTTGTTGGA
CACACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAAACAAGCTTAG
TGAGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAATATCATAAGA
TCTTTCAAGTGACATTATGGAACATAAAAAATAACAGAACTTGATTTTGA
TAATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGCATAATTCAGG
TGGAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGTTTGTTTAAAA
TTCAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAAGTAGATTACT
TCAAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGCCACTGCTAAA
ATCATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATGTGTTACTTTG
TTATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGCAGGAGAATTA
TCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGTCAGAACAGA
ATTCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAATGCAGATATG
AAACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGAATTTGATTTT
TGAATAGTCTATTCCATTAAACAAATTTCTTTAGATATTTCAGAATAATT
TACCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCGGAAAGAATTG
AAACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAACTAGACTGGAC
GCTAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTTAACTTTTTCA
GCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAA
TTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTAAGTAAACGTT
TTGTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTTCTCATTTCTA
TCGGGTGAATACAGATTTGAAATATTTGGGCTATTATGCTAAGCTCAGTT
GTAAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAATTTCTTTAAT
TTTCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATATTTCACATGAT
GTCAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCTTATTGTCTCT
AAGTTATGAATTTCCAAGATAATATATTTATATTTAGATGCAAATCTCAA
GAGTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTATAGATGAATG
AGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGGTAAGTAAT
TTAGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTTGTTTTAAAGT
GTGAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACACTTACCTCTCA
ACTTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAAAACCACTATT
TCTACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGT
AGCTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATTGAATCACCTG
AACGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTTTGTTCATTTC
CTCTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAAAAACTATTTT
TTATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGACTTGTAATTTG
AGGGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCTATGGCCTAAA
TGCTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCGAAAAATGAGG
GTATTAAATCATCATAAAGATATCATAAAGAAATCTTTCTTTTATCAATT
TATTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGTTTCCAAGAAA
GGTGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGTTCGCCTGAGC
TTACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACAAGAAATCTGG
GAGCAACTCACAAATTTGCAATTCCAGACCCTTGATCAATGAAAGCTTCA
ATCAAATATGAAGACTTGGCAAATCGATTTTATATTATTTTCTCATGATA
AAAAATTACATTAATTGACTTTGTGACCCTTGTTTTACACGGTTTAGCCT
ACGATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATTTCAAATCAAA
GTTGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTCCTTGCATGTT
TAGGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAACGTGAT
CGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAGGGCTAA
TCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGTTTGTCTTA
TTGGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAATGCTGCAGCA
AATTTTTTAACATAAACAAACTTATTAAGATAAGGGTTATTTTTTATTGA
GATTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCTGTCGTCTTTT
CTTCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATAAAATTGTATT
TTGTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAAC
AGAAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGC
TTTTCATCGCCGAAAGGTAAGACATAAATATGATCCAACAATCATGATTC
AATGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTTAAGAGGATTC
TGTAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCTTTGTAGGTGT
TTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGGAATCAA
CGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGTATCATC
CGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAACTTGCA
GAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGAGATGTA
CCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAGCCAAAA
GACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATATTTGATG
AAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAATTTAGT
TAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001225-exon-sc0000007-1575043694:1147551..1147655TCONS_00001225-exon-sc0000007-1575043694:1147551..1147655Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1147213..1147356TCONS_00001225-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1146533..1146645TCONS_00001225-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1146360..1146399TCONS_00001225-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1146129..1146197TCONS_00001225-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1145570..1145649TCONS_00001225-exon-sc0000007-1575043694:1145570..1145649Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1143780..1143867TCONS_00001225-exon-sc0000007-1575043694:1143780..1143867Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1143435..1143537TCONS_00001225-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1143110..1143342TCONS_00001225-exon-sc0000007-1575043694:1143110..1143342Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1142813..1142908TCONS_00001225-exon-sc0000007-1575043694:1142813..1142908Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1140241..1140303TCONS_00001225-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1140002..1140100TCONS_00001225-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1139822..1139875TCONS_00001225-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1139532..1139635TCONS_00001225-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1139169..1139254TCONS_00001225-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1138935..1138999TCONS_00001225-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1138765..1138812TCONS_00001225-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1138480..1138647TCONS_00001225-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1137666..1137802TCONS_00001225-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1137340..1137447TCONS_00001225-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1575043694:1136849..1137209TCONS_00001225-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1147551..1147655TCONS_00001225-exon-sc0000007-1510915933:1147551..1147655Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1147213..1147356TCONS_00001225-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1146533..1146645TCONS_00001225-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1146360..1146399TCONS_00001225-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1146129..1146197TCONS_00001225-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1145570..1145649TCONS_00001225-exon-sc0000007-1510915933:1145570..1145649Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1143780..1143867TCONS_00001225-exon-sc0000007-1510915933:1143780..1143867Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1143435..1143537TCONS_00001225-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1143110..1143342TCONS_00001225-exon-sc0000007-1510915933:1143110..1143342Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1142813..1142908TCONS_00001225-exon-sc0000007-1510915933:1142813..1142908Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1140241..1140303TCONS_00001225-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1140002..1140100TCONS_00001225-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1139822..1139875TCONS_00001225-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1139532..1139635TCONS_00001225-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1139169..1139254TCONS_00001225-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1138935..1138999TCONS_00001225-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1138765..1138812TCONS_00001225-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1138480..1138647TCONS_00001225-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1137666..1137802TCONS_00001225-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1137340..1137447TCONS_00001225-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1510915933:1136849..1137209TCONS_00001225-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1147551..1147655TCONS_00001225-exon-sc0000007-1491911889:1147551..1147655Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1147213..1147356TCONS_00001225-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1146533..1146645TCONS_00001225-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1146360..1146399TCONS_00001225-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1146129..1146197TCONS_00001225-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1145570..1145649TCONS_00001225-exon-sc0000007-1491911889:1145570..1145649Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1143780..1143867TCONS_00001225-exon-sc0000007-1491911889:1143780..1143867Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1143435..1143537TCONS_00001225-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1143110..1143342TCONS_00001225-exon-sc0000007-1491911889:1143110..1143342Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1142813..1142908TCONS_00001225-exon-sc0000007-1491911889:1142813..1142908Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1140241..1140303TCONS_00001225-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1140002..1140100TCONS_00001225-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1139822..1139875TCONS_00001225-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1139532..1139635TCONS_00001225-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1139169..1139254TCONS_00001225-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1138935..1138999TCONS_00001225-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1138765..1138812TCONS_00001225-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1138480..1138647TCONS_00001225-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1137666..1137802TCONS_00001225-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1137340..1137447TCONS_00001225-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001225-exon-sc0000007-1491911889:1136849..1137209TCONS_00001225-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147655 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.156168	0.018127	0.197964	1.85433	3.43288	1.46569	4.65006	3.60397	1.50251	0.147292	1.88515	0.981098	0.0849496	0.115445	0.0853724	0.000960111	1.05928	0.140729	0.000936373	1.58494	0.0368945	0.453312	0.0479448	0.550063	2.39998	4.28327	0.00231638	0.0218884	0.865916	0.745913
Blast
[Close]
BLAST of TCONS_00001225 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1091.26 bits (2821), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 1 
Query:   67 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2343
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760
The following BLAST results are available for this feature:
BLAST of TCONS_00001225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
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