TCONS_00001223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001223
Unique NameTCONS_00001223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001223 ID=TCONS_00001223|Name=TCONS_00001223|organism=Clytia hemisphaerica|type=transcript|length=2324bp
tttagacataaaaaataaaaaacaatatgCAGCTTAAACACTTAAAAACT
ACACTGGCTCCCCAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGC
TCCTAACAATACCAAAATGGCAATAGTATCAACTGATCGtgtagttgttc
tttttgatgAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGT
GATGCTAAAACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTC
TCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTG
TATACAAGATTGGTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAG
TTTCTCCAACAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCA
ATATATTATTTTTGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaa
aaaccaacaaatcacaAACTGTCTATGGAACTGGTATCCATTGTATATCT
TTGTGTGTCAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGG
AGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGG
GGCAAGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCA
TCAATCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGA
AGGGCGGGTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAG
AGTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGA
AGTTATGATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTG
GGAAGAATCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCAC
TTTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGT
GGAGTTGAACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAA
ATTTGAAATGACTTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGG
CATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGATTGAT
GAAGTGAAAATAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGA
AACATTGCTTGTGGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCAT
GGCATAATTCAGGTGGAAATGAGAAGttcttctttgaaaatgaaacaGTT
TGTATGGTATTCAATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAA
TGAAGTGTTAGCTACAGTCAGAACAGAATTCATGAACCCTCATCTTATAA
GCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAA
TTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTC
AGGGATGGTTGTAGCCAATATTTCACATGATgtcaaaattgactggttag
aGATGAATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGG
TTATTATTGGCAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATA
TTGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAA
GCAGAAGCGATCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTG
ACTATCGTTCCCATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGG
TAAAACAAACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACAT
TAGACGAAGGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTAT
GCTAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGA
AGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTT
TCATCGCCGAAAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGC
TATTTACGTGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGG
AGATCCTATGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGA
AACAATTCAAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGAT
GAAGCGATGGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGC
CATCGCCGAAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATT
ACTTGCAATATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTT
AAAACCTTGAATTTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147615-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001223 ID=TCONS_00001223|Name=TCONS_00001223|organism=Clytia hemisphaerica|type=transcript|length=10767bp|location=Sequence derived from alignment at sc0000007:1136849..1147615- (Clytia hemisphaerica)
TTTAGACATAAAAAATAAAAAACAATATGCAGCTTAAACACTTAAAAACT
ACACTGGCTCCCCAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTT
TTCTCTTCATATAAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAA
ATATAACCATTGCTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGAC
TGTTTAATCCTTTCTAGTATGATTTATTGTTATACCTTTAAATTGTAATT
TTTATGAAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAA
CAATACCAAAATGGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTG
ATGAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCT
AAAGTAAGCTCTATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAA
AAGTTATCACATGATATCGATTACAATATGGGATGTATTATATTAAGTTA
AACTTTTTCCTCATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAAC
TTTGAACAAGAAAAATATATCCAATATTGTGCGAGTAAGTTTGATAATTG
GTTTAGCATTAACTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGT
GTCTTTTTCTATGTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTAT
TTTGATGAAATTAACACCAAAACATTTATAAAAAATCCAAAGGTCATTAA
AATGTTAAAAACATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTA
TCAGCCAATCAGATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATT
ATTTTAGTAGTCACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCT
TCATTTATTGATTTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTT
CTAAATGATTGTTCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGA
CTAGCATTTTCTCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAA
CATTGTTTTTGTATACAAGATTGGTGACGAATGGTAAGACTAAGAACATT
GATCTTTCTAAAAACTGAAACATCTACAGTCAGATATTATTTACTTATAT
TTGAAGATCGAACATAATATGAAAATGTTATTTATATATATTAATTAATT
TTTGATTTTATTTTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTC
CAACAGGTAAAGTATCTTTTTAAATTGATTATTATTTCATCACAAGAGAA
ATTTTTTTAACATTTGATACCATAGTATTGTATTATCCTATACTGTGTTA
AATGAATGATTTTACTTTACACATCTGCTATAATAATATAATTTAATGAG
GATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGA
AAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTT
GACATTTTGACTTTTATGATGGATGATATCTCTTTTGGGATTCAAATTTT
ATAAATTGATAAAGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATC
TATAGGGCTGACAAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCT
AATGTCACCCCATAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTT
TTTGAAAACAAATAATTAATTTTACTATACTCATGAATTTTAAAAATCAA
AAGGTGATCCTAAAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGAT
GGTATTGGTAGGAAAGGGAGATCTACTTTTTAACCTGGAAATATATATTG
ACGATATAAAGCATACAAACACCTAAAATTTTAGATCACACTTCAAATGA
TTGAGTTTGAGAATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAAT
TTCCATTTTTTTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCAC
AAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTG
GCATTCTGTTTTAATTACATAAATGATTTTCAAACTATAAAATGAAAGCA
ATATTACTATTATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTG
AGTACAGCTTTCAAGAAACTACTTTAACAATTCATATTTAAGCATTTTCA
CAACAGATAATAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAA
ACATTTTCTTGACTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCT
TTGCCATCTGTTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGG
CATGCAGATGGAGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGG
TTTGACCCAGGTATTTTACATATTAAATGTTAAAACATTTAAAGTAGACA
AACTAAACTAATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACT
AGAAGAGTCAATTGCACTTCAGACAAACAATCATTCCAAAGAATAATTTG
CAAATTTCTTTTTTTTTGAAGTGCATTACACAAAGAATAATACAAAGAAT
TATATGCTATCCTAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCAT
AGGGGCAAGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGC
NTACAAGAGAAAATTTTTTAACATTTGATACCACAGTATTGTATTATCCT
ATACTGTGTTAAATGAATGATTTTACTTTACACATCTGCTATAATAATAT
AATTTAATGAGAATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTT
TGGCCCCCAGAAAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGT
TTGTGACTTATGACATTTTGACTTTTATTATATCATGATATAATGATGGA
TGATATCTCTTTTAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGT
TGTCTGTTTGACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATTG
CAAAAAAAGTGTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCAT
TTCTTAGCTGAACAGTTAATTTATTTTTTTGAAAACATATAATTAATTTT
ACTATACTCGTGAATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGC
TTTCAAGATGGTTACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCT
ACTTTTTAACCTGGAAATATATATTGACGATATAAAGCATACAAACACCT
AAAATTTTAGATCACACTTCAAATGATTGAGTTTGAGAATGATTATTTTC
TTCATCTTTCTGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGAT
GGCAAGTCTAAAAACCAACAAATCACAAACTGTCTATGGAACTGGTATCC
ATTGTATATCTTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAAT
GATTTTCAAACTATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTT
GAAGCTTGTAAATGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTT
TAACAATTCATATTTAAGCATTTTCACAACAGATAATAAACTAAAAATTT
TTTTGAAAAAGTTTCATTTAATATAAACATTTTCTTGACTGGACAAATCC
AATAACTGTTTCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTC
CTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGA
TATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGTATTTTACATATT
AAATGTTAAAACATTTAAAGTAGACAAACTAAACTAATATTAGGTATATT
TCTTTTTGAGAAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGAC
AAACAATCATTCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGC
ATTACACAAAGAATAATACAAAGAATTATATGCTATCCTAATATTCAAAT
CTCAAGATTGGTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCT
GTCCACCGTATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGT
GATAAAAGAATTGTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTA
TGTTTCACGAGAAAATCATTTTTATTTAACAAATGATTAATCCTAATATT
TCATTTCCCTAAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATT
CAAAAGATGATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGT
GGTCAGTCAGTGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTG
GAGTCCCCGAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATA
ATTTATACACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTT
TGTGCTGTAAGTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATAT
AGGTTTTAATACATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTC
AATTAGTATTCTACATGCAAATATAAAGAATTTTTTTAAATGGTATTTAC
AAATATATCATAATACAGTAGCTAAATCTTACTGAATAATATTATTTCTG
ACTTCAGGGCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGA
GAAGATCTATTTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGC
CAGGTAAAATGAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTC
AACCCTTTCAGACCCGGTACACACGATTTAAATCTGCCAAAATACCAAGT
CCTGACCACTTGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGT
ACAAAAATATCTTTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTT
AAAACCTTTTATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGA
AAGGTTAAGAAAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTA
AAAAATTGTCCAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGG
AACATATAACATAGTTGAAAATAACACATCATCTTTCTTATGAAAATTTC
TGCCAACTGGCCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCG
CCGCTGTGAGGAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTG
CTCTCTAAAGAGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTT
CTCGACTGACTAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCT
AGCTGGTTGCAATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGAT
TCAAGCGCAGGCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCA
CAATTATAAAAAAATATTTAGTTATTTTCACTAACATTACAAATACAAAG
AAACTTTGTTATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAA
AATTTGGCATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGA
GGTTTGTATATAAATAATTTTTATAAGTAGAAAATCTATCATCAATATTT
CTGCCTAATCAACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTT
ATATTTCTTGGCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAA
GTGAAAATAATGGGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGC
TCATCAATCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAA
AGAAGGTTTTGTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATT
TAACAAATGATTAATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGC
GGGTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTC
ACAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTA
TGATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAG
AATCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCT
TGGAAAAGAGATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTC
TTATTTTTTGTCCTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTG
ACTTACATATGGATGAAAAGTTTCAATTACTATTCTACATGCAAATATAA
AGAATTTTTTTAAATGGTATTTACAAATATATCATAATACAGTAGCTACA
TCTTACTGAATAATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAG
TTGAACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTT
GAAATGACTTATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTA
TACTTTTGAAGATATTAACCCTTCAACCCTTTCAGACCCGGTACACACGA
TTTAAATCTGCCAAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCAT
ACACCGGATGCTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAA
AAACCATTGCCTAACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAAT
TTGGAAAAAATGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAA
TCTGTATTTTGTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATT
TTCTCTGTCTGTGCGAGAGTGTGGAACATATAACATAGTTGAAAATAACA
CATCATCTTTCTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAA
AATGAATTTAATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGT
TAGCAAAGGAAAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTT
TCGGTTCTCTAGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCC
TTGTTTTTTTTTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAA
AGAAATGTTCTGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGA
ATGGCCTTTTTTGAATGAAATGCACAATTATAAAAAAATATTTAGTTATT
TTCACTAACATTACAAATACAAAGAAACTTTGTTATTATTAATGCTAACT
GTTGATTTCTAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGT
TTTAAAATCACATTATGGATACGAGGTTTGTATATAAATAATTTTTATAA
GTAGAAAATCTATCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAA
TCTGTAATATCATATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCT
TGCTGATGTTTTTAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATT
TCTTGTTGGACACACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAA
ACAAGCTTAGTGAGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAA
TATCATAAGATCTTTCAAGTGACATTATGGAACATAAAAAATAACAGAAC
TTGATTTTGATAATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGC
ATAATTCAGGTGGAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGT
TTGTTTAAAATTCAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAA
GTAGATTACTTCAAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGC
CACTGCTAAAATCATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATG
TGTTACTTTGTTATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGC
AGGAGAATTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAG
TCAGAACAGAATTCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAA
TGCAGATATGAAACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGA
ATTTGATTTTTGAATAGTCTATTCCATTAAACAAATTTCTTTAGATATTT
CAGAATAATTTACCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCG
GAAAGAATTGAAACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAAC
TAGACTGGACGCTAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTT
AACTTTTTCAGCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGA
CAATAAAAAATTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTA
AGTAAACGTTTTGTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTT
CTCATTTCTATCGGGTGAATACAGATTTGAAATATTTGGGCTATTATGCT
AAGCTCAGTTGTAAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAA
TTTCTTTAATTTTCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATAT
TTCACATGATGTCAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCT
TATTGTCTCTAAGTTATGAATTTCCAAGATAATATATTTATATTTAGATG
CAAATCTCAAGAGTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTA
TAGATGAATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAG
GGTAAGTAATTTAGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTT
GTTTTAAAGTGTGAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACAC
TTACCTCTCAACTTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAA
AACCACTATTTCTACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTG
ATGTTGTGGTAGCTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATT
GAATCACCTGAACGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTT
TGTTCATTTCCTCTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAA
AAACTATTTTTTATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGAC
TTGTAATTTGAGGGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCT
ATGGCCTAAATGCTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCG
AAAAATGAGGGTATTAAATCATCATAAAGATATCATAAAGAAATCTTTCT
TTTATCAATTTATTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGT
TTCCAAGAAAGGTGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGT
TCGCCTGAGCTTACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACA
AGAAATCTGGGAGCAACTCACAAATTTGCAATTCCAGACCCTTGATCAAT
GAAAGCTTCAATCAAATATGAAGACTTGGCAAATCGATTTTATATTATTT
TCTCATGATAAAAAATTACATTAATTGACTTTGTGACCCTTGTTTTACAC
GGTTTAGCCTACGATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATT
TCAAATCAAAGTTGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTC
CTTGCATGTTTAGGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAA
CAAACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGAC
GAAGGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAG
GTTTGTCTTATTGGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAA
TGCTGCAGCAAATTTTTTAACATAAACAAACTTATTAAGATAAGGGTTAT
TTTTTATTGAGATTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCT
GTCGTCTTTTCTTCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATA
AAATTGTATTTTGTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGT
CACCTGAAACAGAAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAG
AATAAAGAGCTTTTCATCGCCGAAAGGTAAGACATAAATATGATCCAACA
ATCATGATTCAATGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTT
AAGAGGATTCTGTAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCT
TTGTAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTAC
GTGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCT
ATGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATT
CAAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGA
TGGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCC
GAAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCA
ATATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCT
TGAATTTAGTTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001223-exon-sc0000007-1575043694:1147551..1147615TCONS_00001223-exon-sc0000007-1575043694:1147551..1147615Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1147213..1147356TCONS_00001223-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1146533..1146645TCONS_00001223-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1146360..1146399TCONS_00001223-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1144718..1144786TCONS_00001223-exon-sc0000007-1575043694:1144718..1144786Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1144144..1144223TCONS_00001223-exon-sc0000007-1575043694:1144144..1144223Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1143780..1143867TCONS_00001223-exon-sc0000007-1575043694:1143780..1143867Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1143435..1143537TCONS_00001223-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1143110..1143342TCONS_00001223-exon-sc0000007-1575043694:1143110..1143342Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1141089..1141184TCONS_00001223-exon-sc0000007-1575043694:1141089..1141184Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1140241..1140303TCONS_00001223-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1140002..1140100TCONS_00001223-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1139822..1139875TCONS_00001223-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1139532..1139635TCONS_00001223-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1139169..1139254TCONS_00001223-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1138935..1138999TCONS_00001223-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1138765..1138812TCONS_00001223-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1138480..1138647TCONS_00001223-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1137666..1137802TCONS_00001223-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1137340..1137447TCONS_00001223-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1575043694:1136849..1137209TCONS_00001223-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1147551..1147615TCONS_00001223-exon-sc0000007-1510915933:1147551..1147615Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1147213..1147356TCONS_00001223-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1146533..1146645TCONS_00001223-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1146360..1146399TCONS_00001223-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1144718..1144786TCONS_00001223-exon-sc0000007-1510915933:1144718..1144786Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1144144..1144223TCONS_00001223-exon-sc0000007-1510915933:1144144..1144223Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1143780..1143867TCONS_00001223-exon-sc0000007-1510915933:1143780..1143867Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1143435..1143537TCONS_00001223-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1143110..1143342TCONS_00001223-exon-sc0000007-1510915933:1143110..1143342Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1141089..1141184TCONS_00001223-exon-sc0000007-1510915933:1141089..1141184Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1140241..1140303TCONS_00001223-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1140002..1140100TCONS_00001223-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1139822..1139875TCONS_00001223-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1139532..1139635TCONS_00001223-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1139169..1139254TCONS_00001223-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1138935..1138999TCONS_00001223-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1138765..1138812TCONS_00001223-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1138480..1138647TCONS_00001223-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1137666..1137802TCONS_00001223-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1137340..1137447TCONS_00001223-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1510915933:1136849..1137209TCONS_00001223-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1147551..1147615TCONS_00001223-exon-sc0000007-1491911889:1147551..1147615Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1147213..1147356TCONS_00001223-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1146533..1146645TCONS_00001223-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1146360..1146399TCONS_00001223-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1144718..1144786TCONS_00001223-exon-sc0000007-1491911889:1144718..1144786Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1144144..1144223TCONS_00001223-exon-sc0000007-1491911889:1144144..1144223Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1143780..1143867TCONS_00001223-exon-sc0000007-1491911889:1143780..1143867Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1143435..1143537TCONS_00001223-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1143110..1143342TCONS_00001223-exon-sc0000007-1491911889:1143110..1143342Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1141089..1141184TCONS_00001223-exon-sc0000007-1491911889:1141089..1141184Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1140241..1140303TCONS_00001223-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1140002..1140100TCONS_00001223-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1139822..1139875TCONS_00001223-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1139532..1139635TCONS_00001223-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1139169..1139254TCONS_00001223-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1138935..1138999TCONS_00001223-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1138765..1138812TCONS_00001223-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1138480..1138647TCONS_00001223-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1137666..1137802TCONS_00001223-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1137340..1137447TCONS_00001223-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001223-exon-sc0000007-1491911889:1136849..1137209TCONS_00001223-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147615 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02179	1.93256	3.66763	3.63303	3.74309e-06	1.40769e-09	0.00945346	8.38615e-06	5.37662	3.58478	1.78191	2.39124	0.656395	0.482343	0.7714	0.930406	0.135783	0.921728	0.790942	1.15037	1.30055	0.753194	0.514583	0.628553	1.5716e-08	1.35946e-06	1.38988	1.61361	0.666413	0.0257603
Blast
[Close]
BLAST of TCONS_00001223 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.49 bits (2819), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 3 
Query:   27 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2303
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760
The following BLAST results are available for this feature:
BLAST of TCONS_00001223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
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