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TCONS_00001222 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001222
Unique NameTCONS_00001222
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001222 ID=TCONS_00001222|Name=TCONS_00001222|organism=Clytia hemisphaerica|type=transcript|length=2323bp
ttagacataaaaaataaaaaacaatatgCAGCTTAAACACTTAAAAACTA
CACTGGCTCCCCAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCT
CCTAACAATACCAAAATGGCAATAGTATCAACTGATCGtgtagttgttct
ttttgatgAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTG
ATGCTAAAACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCT
CCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGT
ATACAAGATTGGTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAGT
TTCTCCAACAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAA
TATATTATTTTTGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaaa
aaccaacaaatcacaAACTGTCTATGGAACTGGTATCCATTGTATATCTT
TGTGTGTCAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGA
GCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGG
GCAAGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCAT
CAATCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAA
GGGCGGGTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGA
GTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAA
GTTATGATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGG
GAAGAATCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACT
TTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGTG
GAGTTGAACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAA
TTTGAAATGACTTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGGC
ATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGATTGATG
AAGTGAAAATAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAA
ACATTGCTTGTGGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCATG
GCATAATTCAGGTGGAAATGAGAAGttcttctttgaaaatgaaacaGTTT
GTATGGTATTCAATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAAT
GAAGTGTTAGCTACAGTCAGAACAGAATTCATGAACCCTCATCTTATAAG
CGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAAT
TGGGTTATTTGATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTCA
GGGATGGTTGTAGCCAATATTTCACATGATgtcaaaattgactggttaga
GATGAATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGT
TATTATTGGCAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATAT
TGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAG
CAGAAGCGATCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGA
CTATCGTTCCCATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGGT
AAAACAAACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATT
AGACGAAGGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATG
CTAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAA
GCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTT
CATCGCCGAAAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCT
ATTTACGTGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGA
GATCCTATGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAA
ACAATTCAAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATG
AAGCGATGGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCC
ATCGCCGAAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTA
CTTGCAATATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTA
AAACCTTGAATTTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147614-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001222 ID=TCONS_00001222|Name=TCONS_00001222|organism=Clytia hemisphaerica|type=transcript|length=10766bp|location=Sequence derived from alignment at sc0000007:1136849..1147614- (Clytia hemisphaerica)
TTAGACATAAAAAATAAAAAACAATATGCAGCTTAAACACTTAAAAACTA CACTGGCTCCCCAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTTT TCTCTTCATATAAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAAA TATAACCATTGCTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGACT GTTTAATCCTTTCTAGTATGATTTATTGTTATACCTTTAAATTGTAATTT TTATGAAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAAC AATACCAAAATGGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTGA TGAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTA AAGTAAGCTCTATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAAA AGTTATCACATGATATCGATTACAATATGGGATGTATTATATTAAGTTAA ACTTTTTCCTCATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAACT TTGAACAAGAAAAATATATCCAATATTGTGCGAGTAAGTTTGATAATTGG TTTAGCATTAACTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGTG TCTTTTTCTATGTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTATT TTGATGAAATTAACACCAAAACATTTATAAAAAATCCAAAGGTCATTAAA ATGTTAAAAACATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTAT CAGCCAATCAGATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATTA TTTTAGTAGTCACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCTT CATTTATTGATTTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTTC TAAATGATTGTTCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGAC TAGCATTTTCTCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAAC ATTGTTTTTGTATACAAGATTGGTGACGAATGGTAAGACTAAGAACATTG ATCTTTCTAAAAACTGAAACATCTACAGTCAGATATTATTTACTTATATT TGAAGATCGAACATAATATGAAAATGTTATTTATATATATTAATTAATTT TTGATTTTATTTTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCC AACAGGTAAAGTATCTTTTTAAATTGATTATTATTTCATCACAAGAGAAA TTTTTTTAACATTTGATACCATAGTATTGTATTATCCTATACTGTGTTAA ATGAATGATTTTACTTTACACATCTGCTATAATAATATAATTTAATGAGG ATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAA AATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTTG ACATTTTGACTTTTATGATGGATGATATCTCTTTTGGGATTCAAATTTTA TAAATTGATAAAGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATCT ATAGGGCTGACAAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCTA ATGTCACCCCATAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTTT TTGAAAACAAATAATTAATTTTACTATACTCATGAATTTTAAAAATCAAA AGGTGATCCTAAAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGATG GTATTGGTAGGAAAGGGAGATCTACTTTTTAACCTGGAAATATATATTGA CGATATAAAGCATACAAACACCTAAAATTTTAGATCACACTTCAAATGAT TGAGTTTGAGAATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAATT TCCATTTTTTTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCACA AACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTGG CATTCTGTTTTAATTACATAAATGATTTTCAAACTATAAAATGAAAGCAA TATTACTATTATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTGA GTACAGCTTTCAAGAAACTACTTTAACAATTCATATTTAAGCATTTTCAC AACAGATAATAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAAA CATTTTCTTGACTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCTT TGCCATCTGTTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGGC ATGCAGATGGAGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGT TTGACCCAGGTATTTTACATATTAAATGTTAAAACATTTAAAGTAGACAA ACTAAACTAATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACTA GAAGAGTCAATTGCACTTCAGACAAACAATCATTCCAAAGAATAATTTGC AAATTTCTTTTTTTTTGAAGTGCATTACACAAAGAATAATACAAAGAATT ATATGCTATCCTAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCATA GGGGCAAGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCN TACAAGAGAAAATTTTTTAACATTTGATACCACAGTATTGTATTATCCTA TACTGTGTTAAATGAATGATTTTACTTTACACATCTGCTATAATAATATA ATTTAATGAGAATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTT GGCCCCCAGAAAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTT TGTGACTTATGACATTTTGACTTTTATTATATCATGATATAATGATGGAT GATATCTCTTTTAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGTT GTCTGTTTGACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATTGC AAAAAAAGTGTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCATT TCTTAGCTGAACAGTTAATTTATTTTTTTGAAAACATATAATTAATTTTA CTATACTCGTGAATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGCT TTCAAGATGGTTACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCTA CTTTTTAACCTGGAAATATATATTGACGATATAAAGCATACAAACACCTA AAATTTTAGATCACACTTCAAATGATTGAGTTTGAGAATGATTATTTTCT TCATCTTTCTGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGATG GCAAGTCTAAAAACCAACAAATCACAAACTGTCTATGGAACTGGTATCCA TTGTATATCTTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAATG ATTTTCAAACTATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTTG AAGCTTGTAAATGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTTT AACAATTCATATTTAAGCATTTTCACAACAGATAATAAACTAAAAATTTT TTTGAAAAAGTTTCATTTAATATAAACATTTTCTTGACTGGACAAATCCA ATAACTGTTTCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTCC TGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGAT ATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGTATTTTACATATTA AATGTTAAAACATTTAAAGTAGACAAACTAAACTAATATTAGGTATATTT CTTTTTGAGAAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGACA AACAATCATTCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGCA TTACACAAAGAATAATACAAAGAATTATATGCTATCCTAATATTCAAATC TCAAGATTGGTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCTG TCCACCGTATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTG ATAAAAGAATTGTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTAT GTTTCACGAGAAAATCATTTTTATTTAACAAATGATTAATCCTAATATTT CATTTCCCTAAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATTC AAAAGATGATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGTG GTCAGTCAGTGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTGG AGTCCCCGAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATAA TTTATACACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTTT GTGCTGTAAGTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATATA GGTTTTAATACATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTCA ATTAGTATTCTACATGCAAATATAAAGAATTTTTTTAAATGGTATTTACA AATATATCATAATACAGTAGCTAAATCTTACTGAATAATATTATTTCTGA CTTCAGGGCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGAG AAGATCTATTTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGCC AGGTAAAATGAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTCA ACCCTTTCAGACCCGGTACACACGATTTAAATCTGCCAAAATACCAAGTC CTGACCACTTGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGTA CAAAAATATCTTTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTTA AAACCTTTTATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGAA AGGTTAAGAAAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTAA AAAATTGTCCAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGGA ACATATAACATAGTTGAAAATAACACATCATCTTTCTTATGAAAATTTCT GCCAACTGGCCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCGC CGCTGTGAGGAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTGC TCTCTAAAGAGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTTC TCGACTGACTAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCTA GCTGGTTGCAATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGATT CAAGCGCAGGCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCAC AATTATAAAAAAATATTTAGTTATTTTCACTAACATTACAAATACAAAGA AACTTTGTTATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAAA ATTTGGCATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAG GTTTGTATATAAATAATTTTTATAAGTAGAAAATCTATCATCAATATTTC TGCCTAATCAACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTTA TATTTCTTGGCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAAG TGAAAATAATGGGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGCT CATCAATCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAA GAAGGTTTTGTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATTT AACAAATGATTAATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGCG GGTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCA CAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTAT GATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGA ATCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTT GGAAAAGAGATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTCT TATTTTTTGTCCTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTGA CTTACATATGGATGAAAAGTTTCAATTACTATTCTACATGCAAATATAAA GAATTTTTTTAAATGGTATTTACAAATATATCATAATACAGTAGCTACAT CTTACTGAATAATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAGT TGAACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTG AAATGACTTATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTAT ACTTTTGAAGATATTAACCCTTCAACCCTTTCAGACCCGGTACACACGAT TTAAATCTGCCAAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCATA CACCGGATGCTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAAA AACCATTGCCTAACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAATT TGGAAAAAATGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAAT CTGTATTTTGTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATTT TCTCTGTCTGTGCGAGAGTGTGGAACATATAACATAGTTGAAAATAACAC ATCATCTTTCTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAAA ATGAATTTAATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGTT AGCAAAGGAAAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTTT CGGTTCTCTAGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCCT TGTTTTTTTTTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAAA GAAATGTTCTGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGAA TGGCCTTTTTTGAATGAAATGCACAATTATAAAAAAATATTTAGTTATTT TCACTAACATTACAAATACAAAGAAACTTTGTTATTATTAATGCTAACTG TTGATTTCTAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTT TTAAAATCACATTATGGATACGAGGTTTGTATATAAATAATTTTTATAAG TAGAAAATCTATCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAAT CTGTAATATCATATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCTT GCTGATGTTTTTAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATTT CTTGTTGGACACACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAAA CAAGCTTAGTGAGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAAT ATCATAAGATCTTTCAAGTGACATTATGGAACATAAAAAATAACAGAACT TGATTTTGATAATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGCA TAATTCAGGTGGAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGTT TGTTTAAAATTCAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAAG TAGATTACTTCAAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGCC ACTGCTAAAATCATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATGT GTTACTTTGTTATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGCA GGAGAATTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGT CAGAACAGAATTCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAAT GCAGATATGAAACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGAA TTTGATTTTTGAATAGTCTATTCCATTAAACAAATTTCTTTAGATATTTC AGAATAATTTACCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCGG AAAGAATTGAAACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAACT AGACTGGACGCTAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTTA ACTTTTTCAGCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGAC AATAAAAAATTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTAA GTAAACGTTTTGTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTTC TCATTTCTATCGGGTGAATACAGATTTGAAATATTTGGGCTATTATGCTA AGCTCAGTTGTAAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAAT TTCTTTAATTTTCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATATT TCACATGATGTCAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCTT ATTGTCTCTAAGTTATGAATTTCCAAGATAATATATTTATATTTAGATGC AAATCTCAAGAGTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTAT AGATGAATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGG GTAAGTAATTTAGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTTG TTTTAAAGTGTGAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACACT TACCTCTCAACTTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAAA ACCACTATTTCTACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTGA TGTTGTGGTAGCTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATTG AATCACCTGAACGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTTT GTTCATTTCCTCTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAAA AACTATTTTTTATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGACT TGTAATTTGAGGGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCTA TGGCCTAAATGCTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCGA AAAATGAGGGTATTAAATCATCATAAAGATATCATAAAGAAATCTTTCTT TTATCAATTTATTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGTT TCCAAGAAAGGTGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGTT CGCCTGAGCTTACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACAA GAAATCTGGGAGCAACTCACAAATTTGCAATTCCAGACCCTTGATCAATG AAAGCTTCAATCAAATATGAAGACTTGGCAAATCGATTTTATATTATTTT CTCATGATAAAAAATTACATTAATTGACTTTGTGACCCTTGTTTTACACG GTTTAGCCTACGATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATTT CAAATCAAAGTTGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTCC TTGCATGTTTAGGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAAC AAACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACG AAGGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGG TTTGTCTTATTGGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAAT GCTGCAGCAAATTTTTTAACATAAACAAACTTATTAAGATAAGGGTTATT TTTTATTGAGATTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCTG TCGTCTTTTCTTCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATAA AATTGTATTTTGTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTC ACCTGAAACAGAAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGA ATAAAGAGCTTTTCATCGCCGAAAGGTAAGACATAAATATGATCCAACAA TCATGATTCAATGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTTA AGAGGATTCTGTAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCTT TGTAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACG TGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTA TGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTC AAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGAT GGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCG AAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAA TATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTT GAATTTAGTTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001222-exon-sc0000007-1575043694:1147551..1147614TCONS_00001222-exon-sc0000007-1575043694:1147551..1147614Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1147213..1147356TCONS_00001222-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1146533..1146645TCONS_00001222-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1146360..1146399TCONS_00001222-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1146129..1146197TCONS_00001222-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1145570..1145649TCONS_00001222-exon-sc0000007-1575043694:1145570..1145649Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1143780..1143867TCONS_00001222-exon-sc0000007-1575043694:1143780..1143867Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1143435..1143537TCONS_00001222-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1141386..1141618TCONS_00001222-exon-sc0000007-1575043694:1141386..1141618Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1141089..1141184TCONS_00001222-exon-sc0000007-1575043694:1141089..1141184Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1140241..1140303TCONS_00001222-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1140002..1140100TCONS_00001222-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1139822..1139875TCONS_00001222-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1139532..1139635TCONS_00001222-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1139169..1139254TCONS_00001222-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1138935..1138999TCONS_00001222-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1138765..1138812TCONS_00001222-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1138480..1138647TCONS_00001222-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1137666..1137802TCONS_00001222-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1137340..1137447TCONS_00001222-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1575043694:1136849..1137209TCONS_00001222-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1147551..1147614TCONS_00001222-exon-sc0000007-1510915933:1147551..1147614Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1147213..1147356TCONS_00001222-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1146533..1146645TCONS_00001222-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1146360..1146399TCONS_00001222-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1146129..1146197TCONS_00001222-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1145570..1145649TCONS_00001222-exon-sc0000007-1510915933:1145570..1145649Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1143780..1143867TCONS_00001222-exon-sc0000007-1510915933:1143780..1143867Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1143435..1143537TCONS_00001222-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1141386..1141618TCONS_00001222-exon-sc0000007-1510915933:1141386..1141618Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1141089..1141184TCONS_00001222-exon-sc0000007-1510915933:1141089..1141184Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1140241..1140303TCONS_00001222-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1140002..1140100TCONS_00001222-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1139822..1139875TCONS_00001222-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1139532..1139635TCONS_00001222-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1139169..1139254TCONS_00001222-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1138935..1138999TCONS_00001222-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1138765..1138812TCONS_00001222-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1138480..1138647TCONS_00001222-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1137666..1137802TCONS_00001222-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1137340..1137447TCONS_00001222-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1510915933:1136849..1137209TCONS_00001222-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1147551..1147614TCONS_00001222-exon-sc0000007-1491911889:1147551..1147614Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1147213..1147356TCONS_00001222-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1146533..1146645TCONS_00001222-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1146360..1146399TCONS_00001222-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1146129..1146197TCONS_00001222-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1145570..1145649TCONS_00001222-exon-sc0000007-1491911889:1145570..1145649Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1143780..1143867TCONS_00001222-exon-sc0000007-1491911889:1143780..1143867Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1143435..1143537TCONS_00001222-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1141386..1141618TCONS_00001222-exon-sc0000007-1491911889:1141386..1141618Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1141089..1141184TCONS_00001222-exon-sc0000007-1491911889:1141089..1141184Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1140241..1140303TCONS_00001222-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1140002..1140100TCONS_00001222-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1139822..1139875TCONS_00001222-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1139532..1139635TCONS_00001222-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1139169..1139254TCONS_00001222-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1138935..1138999TCONS_00001222-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1138765..1138812TCONS_00001222-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1138480..1138647TCONS_00001222-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1137666..1137802TCONS_00001222-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1137340..1137447TCONS_00001222-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001222-exon-sc0000007-1491911889:1136849..1137209TCONS_00001222-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147614 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89855 3.51686 7.01744 6.54604 6.5992e-06 2.56778e-09 0.0165568 1.57598e-05 2.96248 6.25467 3.11642 4.34129 1.25829 1.02602 1.51557 1.82537 0.252889 1.78878 1.41639 2.16903 2.50612 1.37585 0.967496 1.25256 2.9146e-08 2.51998e-06 2.65806 2.96995 1.24528 0.0445652
Blast
BLAST of TCONS_00001222 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.49 bits (2819), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 2
Query:   26 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2302
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760          
The following BLAST results are available for this feature:
BLAST of TCONS_00001222 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
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