TCONS_00001220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001220
Unique NameTCONS_00001220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001220 ID=TCONS_00001220|Name=TCONS_00001220|organism=Clytia hemisphaerica|type=transcript|length=2323bp
ttagacataaaaaataaaaaacaatatgCAGCTTAAACACTTAAAAACTA
CACTGGCTCCCCAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCT
CCTAACAATACCAAAATGGCAATAGTATCAACTGATCGtgtagttgttct
ttttgatgAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTG
ATGCTAAAACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCT
CCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGT
ATACAAGATTGGTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAGT
TTCTCCAACAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAA
TATATTATTTTTGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaaa
aaccaacaaatcacaAACTGTCTATGGAACTGGTATCCATTGTATATCTT
TGTGTGTCAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGA
GCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGG
GCAAGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCAT
CAATCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAA
GGGCGGGTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGA
GTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAA
GTTATGATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGG
GAAGAATCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACT
TTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGTG
GAGTTGAACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAA
TTTGAAATGACTTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGGC
ATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGATTGATG
AAGTGAAAATAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAA
ACATTGCTTGTGGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCATG
GCATAATTCAGGTGGAAATGAGAAGttcttctttgaaaatgaaacaGTTT
GTATGGTATTCAATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAAT
GAAGTGTTAGCTACAGTCAGAACAGAATTCATGAACCCTCATCTTATAAG
CGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAAT
TGGGTTATTTGATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTCA
GGGATGGTTGTAGCCAATATTTCACATGATgtcaaaattgactggttaga
GATGAATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGT
TATTATTGGCAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATAT
TGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAG
CAGAAGCGATCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGA
CTATCGTTCCCATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGGT
AAAACAAACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATT
AGACGAAGGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATG
CTAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAA
GCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTT
CATCGCCGAAAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCT
ATTTACGTGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGA
GATCCTATGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAA
ACAATTCAAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATG
AAGCGATGGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCC
ATCGCCGAAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTA
CTTGCAATATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTA
AAACCTTGAATTTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147614-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001220 ID=TCONS_00001220|Name=TCONS_00001220|organism=Clytia hemisphaerica|type=transcript|length=10766bp|location=Sequence derived from alignment at sc0000007:1136849..1147614- (Clytia hemisphaerica)
TTAGACATAAAAAATAAAAAACAATATGCAGCTTAAACACTTAAAAACTA
CACTGGCTCCCCAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTTT
TCTCTTCATATAAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAAA
TATAACCATTGCTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGACT
GTTTAATCCTTTCTAGTATGATTTATTGTTATACCTTTAAATTGTAATTT
TTATGAAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAAC
AATACCAAAATGGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTGA
TGAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTA
AAGTAAGCTCTATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAAA
AGTTATCACATGATATCGATTACAATATGGGATGTATTATATTAAGTTAA
ACTTTTTCCTCATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAACT
TTGAACAAGAAAAATATATCCAATATTGTGCGAGTAAGTTTGATAATTGG
TTTAGCATTAACTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGTG
TCTTTTTCTATGTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTATT
TTGATGAAATTAACACCAAAACATTTATAAAAAATCCAAAGGTCATTAAA
ATGTTAAAAACATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTAT
CAGCCAATCAGATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATTA
TTTTAGTAGTCACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCTT
CATTTATTGATTTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTTC
TAAATGATTGTTCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGAC
TAGCATTTTCTCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAAC
ATTGTTTTTGTATACAAGATTGGTGACGAATGGTAAGACTAAGAACATTG
ATCTTTCTAAAAACTGAAACATCTACAGTCAGATATTATTTACTTATATT
TGAAGATCGAACATAATATGAAAATGTTATTTATATATATTAATTAATTT
TTGATTTTATTTTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCC
AACAGGTAAAGTATCTTTTTAAATTGATTATTATTTCATCACAAGAGAAA
TTTTTTTAACATTTGATACCATAGTATTGTATTATCCTATACTGTGTTAA
ATGAATGATTTTACTTTACACATCTGCTATAATAATATAATTTAATGAGG
ATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAA
AATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTTG
ACATTTTGACTTTTATGATGGATGATATCTCTTTTGGGATTCAAATTTTA
TAAATTGATAAAGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATCT
ATAGGGCTGACAAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCTA
ATGTCACCCCATAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTTT
TTGAAAACAAATAATTAATTTTACTATACTCATGAATTTTAAAAATCAAA
AGGTGATCCTAAAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGATG
GTATTGGTAGGAAAGGGAGATCTACTTTTTAACCTGGAAATATATATTGA
CGATATAAAGCATACAAACACCTAAAATTTTAGATCACACTTCAAATGAT
TGAGTTTGAGAATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAATT
TCCATTTTTTTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCACA
AACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTGG
CATTCTGTTTTAATTACATAAATGATTTTCAAACTATAAAATGAAAGCAA
TATTACTATTATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTGA
GTACAGCTTTCAAGAAACTACTTTAACAATTCATATTTAAGCATTTTCAC
AACAGATAATAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAAA
CATTTTCTTGACTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCTT
TGCCATCTGTTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGGC
ATGCAGATGGAGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGT
TTGACCCAGGTATTTTACATATTAAATGTTAAAACATTTAAAGTAGACAA
ACTAAACTAATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACTA
GAAGAGTCAATTGCACTTCAGACAAACAATCATTCCAAAGAATAATTTGC
AAATTTCTTTTTTTTTGAAGTGCATTACACAAAGAATAATACAAAGAATT
ATATGCTATCCTAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCATA
GGGGCAAGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCN
TACAAGAGAAAATTTTTTAACATTTGATACCACAGTATTGTATTATCCTA
TACTGTGTTAAATGAATGATTTTACTTTACACATCTGCTATAATAATATA
ATTTAATGAGAATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTT
GGCCCCCAGAAAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTT
TGTGACTTATGACATTTTGACTTTTATTATATCATGATATAATGATGGAT
GATATCTCTTTTAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGTT
GTCTGTTTGACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATTGC
AAAAAAAGTGTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCATT
TCTTAGCTGAACAGTTAATTTATTTTTTTGAAAACATATAATTAATTTTA
CTATACTCGTGAATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGCT
TTCAAGATGGTTACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCTA
CTTTTTAACCTGGAAATATATATTGACGATATAAAGCATACAAACACCTA
AAATTTTAGATCACACTTCAAATGATTGAGTTTGAGAATGATTATTTTCT
TCATCTTTCTGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGATG
GCAAGTCTAAAAACCAACAAATCACAAACTGTCTATGGAACTGGTATCCA
TTGTATATCTTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAATG
ATTTTCAAACTATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTTG
AAGCTTGTAAATGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTTT
AACAATTCATATTTAAGCATTTTCACAACAGATAATAAACTAAAAATTTT
TTTGAAAAAGTTTCATTTAATATAAACATTTTCTTGACTGGACAAATCCA
ATAACTGTTTCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTCC
TGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGAT
ATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGTATTTTACATATTA
AATGTTAAAACATTTAAAGTAGACAAACTAAACTAATATTAGGTATATTT
CTTTTTGAGAAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGACA
AACAATCATTCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGCA
TTACACAAAGAATAATACAAAGAATTATATGCTATCCTAATATTCAAATC
TCAAGATTGGTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCTG
TCCACCGTATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTG
ATAAAAGAATTGTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTAT
GTTTCACGAGAAAATCATTTTTATTTAACAAATGATTAATCCTAATATTT
CATTTCCCTAAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATTC
AAAAGATGATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGTG
GTCAGTCAGTGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTGG
AGTCCCCGAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATAA
TTTATACACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTTT
GTGCTGTAAGTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATATA
GGTTTTAATACATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTCA
ATTAGTATTCTACATGCAAATATAAAGAATTTTTTTAAATGGTATTTACA
AATATATCATAATACAGTAGCTAAATCTTACTGAATAATATTATTTCTGA
CTTCAGGGCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGAG
AAGATCTATTTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGCC
AGGTAAAATGAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTCA
ACCCTTTCAGACCCGGTACACACGATTTAAATCTGCCAAAATACCAAGTC
CTGACCACTTGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGTA
CAAAAATATCTTTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTTA
AAACCTTTTATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGAA
AGGTTAAGAAAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTAA
AAAATTGTCCAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGGA
ACATATAACATAGTTGAAAATAACACATCATCTTTCTTATGAAAATTTCT
GCCAACTGGCCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCGC
CGCTGTGAGGAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTGC
TCTCTAAAGAGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTTC
TCGACTGACTAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCTA
GCTGGTTGCAATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGATT
CAAGCGCAGGCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCAC
AATTATAAAAAAATATTTAGTTATTTTCACTAACATTACAAATACAAAGA
AACTTTGTTATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAAA
ATTTGGCATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAG
GTTTGTATATAAATAATTTTTATAAGTAGAAAATCTATCATCAATATTTC
TGCCTAATCAACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTTA
TATTTCTTGGCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAAG
TGAAAATAATGGGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGCT
CATCAATCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAA
GAAGGTTTTGTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATTT
AACAAATGATTAATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGCG
GGTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCA
CAGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTAT
GATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGA
ATCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTT
GGAAAAGAGATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTCT
TATTTTTTGTCCTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTGA
CTTACATATGGATGAAAAGTTTCAATTACTATTCTACATGCAAATATAAA
GAATTTTTTTAAATGGTATTTACAAATATATCATAATACAGTAGCTACAT
CTTACTGAATAATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAGT
TGAACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTG
AAATGACTTATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTAT
ACTTTTGAAGATATTAACCCTTCAACCCTTTCAGACCCGGTACACACGAT
TTAAATCTGCCAAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCATA
CACCGGATGCTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAAA
AACCATTGCCTAACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAATT
TGGAAAAAATGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAAT
CTGTATTTTGTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATTT
TCTCTGTCTGTGCGAGAGTGTGGAACATATAACATAGTTGAAAATAACAC
ATCATCTTTCTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAAA
ATGAATTTAATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGTT
AGCAAAGGAAAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTTT
CGGTTCTCTAGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCCT
TGTTTTTTTTTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAAA
GAAATGTTCTGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGAA
TGGCCTTTTTTGAATGAAATGCACAATTATAAAAAAATATTTAGTTATTT
TCACTAACATTACAAATACAAAGAAACTTTGTTATTATTAATGCTAACTG
TTGATTTCTAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTT
TTAAAATCACATTATGGATACGAGGTTTGTATATAAATAATTTTTATAAG
TAGAAAATCTATCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAAT
CTGTAATATCATATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCTT
GCTGATGTTTTTAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATTT
CTTGTTGGACACACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAAA
CAAGCTTAGTGAGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAAT
ATCATAAGATCTTTCAAGTGACATTATGGAACATAAAAAATAACAGAACT
TGATTTTGATAATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGCA
TAATTCAGGTGGAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGTT
TGTTTAAAATTCAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAAG
TAGATTACTTCAAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGCC
ACTGCTAAAATCATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATGT
GTTACTTTGTTATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGCA
GGAGAATTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGT
CAGAACAGAATTCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAAT
GCAGATATGAAACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGAA
TTTGATTTTTGAATAGTCTATTCCATTAAACAAATTTCTTTAGATATTTC
AGAATAATTTACCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCGG
AAAGAATTGAAACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAACT
AGACTGGACGCTAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTTA
ACTTTTTCAGCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGAC
AATAAAAAATTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTAA
GTAAACGTTTTGTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTTC
TCATTTCTATCGGGTGAATACAGATTTGAAATATTTGGGCTATTATGCTA
AGCTCAGTTGTAAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAAT
TTCTTTAATTTTCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATATT
TCACATGATGTCAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCTT
ATTGTCTCTAAGTTATGAATTTCCAAGATAATATATTTATATTTAGATGC
AAATCTCAAGAGTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTAT
AGATGAATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGG
GTAAGTAATTTAGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTTG
TTTTAAAGTGTGAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACACT
TACCTCTCAACTTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAAA
ACCACTATTTCTACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTGA
TGTTGTGGTAGCTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATTG
AATCACCTGAACGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTTT
GTTCATTTCCTCTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAAA
AACTATTTTTTATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGACT
TGTAATTTGAGGGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCTA
TGGCCTAAATGCTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCGA
AAAATGAGGGTATTAAATCATCATAAAGATATCATAAAGAAATCTTTCTT
TTATCAATTTATTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGTT
TCCAAGAAAGGTGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGTT
CGCCTGAGCTTACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACAA
GAAATCTGGGAGCAACTCACAAATTTGCAATTCCAGACCCTTGATCAATG
AAAGCTTCAATCAAATATGAAGACTTGGCAAATCGATTTTATATTATTTT
CTCATGATAAAAAATTACATTAATTGACTTTGTGACCCTTGTTTTACACG
GTTTAGCCTACGATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATTT
CAAATCAAAGTTGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTCC
TTGCATGTTTAGGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAAC
AAACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACG
AAGGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGG
TTTGTCTTATTGGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAAT
GCTGCAGCAAATTTTTTAACATAAACAAACTTATTAAGATAAGGGTTATT
TTTTATTGAGATTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCTG
TCGTCTTTTCTTCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATAA
AATTGTATTTTGTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTC
ACCTGAAACAGAAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGA
ATAAAGAGCTTTTCATCGCCGAAAGGTAAGACATAAATATGATCCAACAA
TCATGATTCAATGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTTA
AGAGGATTCTGTAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCTT
TGTAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACG
TGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTA
TGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTC
AAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGAT
GGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCG
AAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAA
TATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTT
GAATTTAGTTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001220-exon-sc0000007-1575043694:1147551..1147614TCONS_00001220-exon-sc0000007-1575043694:1147551..1147614Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1147213..1147356TCONS_00001220-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1146533..1146645TCONS_00001220-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1146360..1146399TCONS_00001220-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1146129..1146197TCONS_00001220-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1145570..1145649TCONS_00001220-exon-sc0000007-1575043694:1145570..1145649Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1145206..1145293TCONS_00001220-exon-sc0000007-1575043694:1145206..1145293Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1143435..1143537TCONS_00001220-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1143110..1143342TCONS_00001220-exon-sc0000007-1575043694:1143110..1143342Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1142813..1142908TCONS_00001220-exon-sc0000007-1575043694:1142813..1142908Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1140241..1140303TCONS_00001220-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1140002..1140100TCONS_00001220-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1139822..1139875TCONS_00001220-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1139532..1139635TCONS_00001220-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1139169..1139254TCONS_00001220-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1138935..1138999TCONS_00001220-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1138765..1138812TCONS_00001220-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1138480..1138647TCONS_00001220-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1137666..1137802TCONS_00001220-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1137340..1137447TCONS_00001220-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1575043694:1136849..1137209TCONS_00001220-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1147551..1147614TCONS_00001220-exon-sc0000007-1510915933:1147551..1147614Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1147213..1147356TCONS_00001220-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1146533..1146645TCONS_00001220-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1146360..1146399TCONS_00001220-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1146129..1146197TCONS_00001220-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1145570..1145649TCONS_00001220-exon-sc0000007-1510915933:1145570..1145649Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1145206..1145293TCONS_00001220-exon-sc0000007-1510915933:1145206..1145293Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1143435..1143537TCONS_00001220-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1143110..1143342TCONS_00001220-exon-sc0000007-1510915933:1143110..1143342Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1142813..1142908TCONS_00001220-exon-sc0000007-1510915933:1142813..1142908Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1140241..1140303TCONS_00001220-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1140002..1140100TCONS_00001220-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1139822..1139875TCONS_00001220-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1139532..1139635TCONS_00001220-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1139169..1139254TCONS_00001220-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1138935..1138999TCONS_00001220-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1138765..1138812TCONS_00001220-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1138480..1138647TCONS_00001220-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1137666..1137802TCONS_00001220-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1137340..1137447TCONS_00001220-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1510915933:1136849..1137209TCONS_00001220-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1147551..1147614TCONS_00001220-exon-sc0000007-1491911889:1147551..1147614Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1147213..1147356TCONS_00001220-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1146533..1146645TCONS_00001220-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1146360..1146399TCONS_00001220-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1146129..1146197TCONS_00001220-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1145570..1145649TCONS_00001220-exon-sc0000007-1491911889:1145570..1145649Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1145206..1145293TCONS_00001220-exon-sc0000007-1491911889:1145206..1145293Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1143435..1143537TCONS_00001220-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1143110..1143342TCONS_00001220-exon-sc0000007-1491911889:1143110..1143342Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1142813..1142908TCONS_00001220-exon-sc0000007-1491911889:1142813..1142908Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1140241..1140303TCONS_00001220-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1140002..1140100TCONS_00001220-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1139822..1139875TCONS_00001220-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1139532..1139635TCONS_00001220-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1139169..1139254TCONS_00001220-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1138935..1138999TCONS_00001220-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1138765..1138812TCONS_00001220-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1138480..1138647TCONS_00001220-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1137666..1137802TCONS_00001220-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1137340..1137447TCONS_00001220-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001220-exon-sc0000007-1491911889:1136849..1137209TCONS_00001220-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147614 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.89855	3.51686	7.01744	6.54604	6.5992e-06	2.56778e-09	0.0165568	1.57598e-05	2.96248	6.25467	3.11642	4.34129	1.25829	1.02602	1.51557	1.82537	0.252889	1.78878	1.41639	2.16903	2.50612	1.37585	0.967496	1.25256	2.9146e-08	2.51998e-06	2.65806	2.96995	1.24528	0.0445652
Blast
[Close]
BLAST of TCONS_00001220 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.49 bits (2819), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 2 
Query:   26 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2302
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760
The following BLAST results are available for this feature:
BLAST of TCONS_00001220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
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