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TCONS_00001219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001219
Unique NameTCONS_00001219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001219 ID=TCONS_00001219|Name=TCONS_00001219|organism=Clytia hemisphaerica|type=transcript|length=2317bp
ataaaaaataaaaaacaatatgCAGCTTAAACACTTAAAAACTACACTGG
CTCCCCAGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAAC
AATACCAAAATGGCAATAGTATCAACTGATCGtgtagttgttctttttga
tgAACATGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTA
AAACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCATTTTCTCCTGAT
TCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTTTTTGTATACAA
GATTGGTGACGAATGgGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCC
AACAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAATATATT
ATTTTTGGTCTTGCTGATGGAAAGgTCAGGATGGCAAGTctaaaaaccaa
caaatcacaAACTGTCTATGGAACTGGTATCCATTGTATATCTTTGTGTG
TCAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATT
GTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACCCAGGGGCAAGT
TGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAATCA
TTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGGCGG
GTATTACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCAC
AGTTGCAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATG
ATAGATTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAA
TCTAAACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTG
GAAAAGAGATGGTTCAAGGCTTTGTGCTGGCACACTCTGTGGTGGAGTTG
AACTGTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAA
ATGACTTATGTTGGGTTGAGCCAGGTTATTGTCAAAAATTTGGCATCAGG
AGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGATTGATGAAGTGA
AAATAATGGGGAAGGACAGATTTCTTGTTGGACACACTTCAGAAACATTG
CTTGTGGGAGATCTAAACGAAAACAAGCTTAGTGAGCTTCCATGGCATAA
TTCAGGTGGAAATGAGAAGttcttctttgaaaatgaaacaGTTTGTATGG
TATTCAATGCAGGAGAATTATCTTTGATCGAGTATGGTCAAAATGAAGTG
TTAGCTACAGTCAGAACAGAATTCATGAACCCTCATCTTATAAGCGTACG
TTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAAAAATTGGGTT
ATTTGATTGACCTGAAAACTATATGTGTCAtgGACTTGATGTCAGGGATG
GTTGTAGCCAATATTTCACATGATgtcaaaattgactggttagaGATGAA
TGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGTTATTAT
TGGCAGATATTCAAAGTGAAACAAAAACCACTATTTCTACATATTGCTCT
TATGTGCAATGGGTGCCTTTGAGTGATGTTGTGGTAGCTCAAAGCAGAAG
CGATCTTTGTGTTTGGTACAATATTGAATCACCTGAACGAGTGACTATCG
TTCCCATCAAAGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACA
AACGTGATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGA
AGGGCTAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGG
CTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGAAACAGAAGCTATG
TGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAGAGCTTTTCATCGC
CGAAAGGTGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTAC
GTGGAATCAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCT
ATGTATCATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATT
CAAACTTGCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGA
TGGAGATGTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCC
GAAGCCAAAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCA
ATATTTGATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCT
TGAATTTAGTTAACAGA
Run BLAST on NCBI

transcript from alignment at sc0000007:1136849..1147608-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001219 ID=TCONS_00001219|Name=TCONS_00001219|organism=Clytia hemisphaerica|type=transcript|length=10760bp|location=Sequence derived from alignment at sc0000007:1136849..1147608- (Clytia hemisphaerica)
ATAAAAAATAAAAAACAATATGCAGCTTAAACACTTAAAAACTACACTGG CTCCCCAGGTATGAAAACTTTCTTTTTTACAGTGTTGTAACTTTTCTCTT CATATAAAAAACTATTTAGGAATGAAATATTAAAGAACTCAAAATATAAC CATTGCTGAACTTTATCTTTTTCATTTCACCCAGAGGCAAGACTGTTTAA TCCTTTCTAGTATGATTTATTGTTATACCTTTAAATTGTAATTTTTATGA AGGATGGAGCTGCTAAGATCACAGCAATGGCATGGGCTCCTAACAATACC AAAATGGCAATAGTATCAACTGATCGTGTAGTTGTTCTTTTTGATGAACA TGGAGAAAAAAGGGACAAATTTGGAACAAAACCTGGTGATGCTAAAGTAA GCTCTATCTAAGTCAAAAAATCCCTTTGTGATAGAACAAATAAAAGTTAT CACATGATATCGATTACAATATGGGATGTATTATATTAAGTTAAACTTTT TCCTCATATTTTTGAGCCCGTATGCCAGGAAACTATCAAAAACTTTGAAC AAGAAAAATATATCCAATATTGTGCGAGTAAGTTTGATAATTGGTTTAGC ATTAACTTGAAAAATACGACCAAACTTTTCTCTCTCCATTTGTGTCTTTT TCTATGTTTTTTTTTCTCTTCATGCATTTTGTTCTTCCTCTATTTTGATG AAATTAACACCAAAACATTTATAAAAAATCCAAAGGTCATTAAAATGTTA AAAACATTCTTTTGTATAACTCTTCGGATGATTTGCTGCTCTATCAGCCA ATCAGATTGCTCATATTTTTCATGTTGATGAAAAGATTAAATTATTTTAG TAGTCACATAAGCATAAGCCTTGGATGAAATAATGAATCTTCTTCATTTA TTGATTTCAAATCTTTCTTACTATCCACACCAAAGTTACCTTTCTAAATG ATTGTTCTTTTAGACTGGGAAGAAAGGTTACCAAGTGAAAGGACTAGCAT TTTCTCCTGATTCCACCAAGATAGCTGTTGGACAAACAGATAACATTGTT TTTGTATACAAGATTGGTGACGAATGGTAAGACTAAGAACATTGATCTTT CTAAAAACTGAAACATCTACAGTCAGATATTATTTACTTATATTTGAAGA TCGAACATAATATGAAAATGTTATTTATATATATTAATTAATTTTTGATT TTATTTTAGGGGCGAAAGAAAAGTTATATGCAACAAGTTTCTCCAACAGG TAAAGTATCTTTTTAAATTGATTATTATTTCATCACAAGAGAAATTTTTT TAACATTTGATACCATAGTATTGTATTATCCTATACTGTGTTAAATGAAT GATTTTACTTTACACATCTGCTATAATAATATAATTTAATGAGGATCAAT TTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCCCAGAAAATCAA TATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGACTTTTGACATTT TGACTTTTATGATGGATGATATCTCTTTTGGGATTCAAATTTTATAAATT GATAAAGTAAAATAGTTGTCTGTTTGACCATACCTCCTAAATCTATAGGG CTGACAAAATGAATGGCAAAAAAAGTGTTTTTAAAACCAGCCTAATGTCA CCCCATAAGTGACCATTTCTTAGCTGAACAGTTAATTTATTTTTTTGAAA ACAAATAATTAATTTTACTATACTCATGAATTTTAAAAATCAAAAGGTGA TCCTAAAAGTCTCAGCTTTCAAAGATGGTTACATTTAAGAGATGGTATTG GTAGGAAAGGGAGATCTACTTTTTAACCTGGAAATATATATTGACGATAT AAAGCATACAAACACCTAAAATTTTAGATCACACTTCAAATGATTGAGTT TGAGAATGATTATTTTCTTCATCTTTCTGTAATGTTTTAAAATTTCCATT TTTTTTTAGGTCAGGATGGCAAGTCTAAAAACCAACAAATCACAAACTGT CTATGGAACTGGTATCCATTGTATATCTTTGTGTGTCAGGTTGGCATTCT GTTTTAATTACATAAATGATTTTCAAACTATAAAATGAAAGCAATATTAC TATTATGTTAAGTCTTTGAAGCTTGTAAATGAAGACATAATTGAGTACAG CTTTCAAGAAACTACTTTAACAATTCATATTTAAGCATTTTCACAACAGA TAATAAACTAAAAATTTTTTTGAAAAAGTTTCATTTAATATAAACATTTT CTTGACTGGACAAATCCAATAACTGTTTCAGGTTAAATTATCTTTGCCAT CTGTTCTCTTTTTAGTCCTGATGGGAAAGGTGTTTTGTCAGGGCATGCAG ATGGAGCCATTGTCAGATATATGTTTGAAGATACTGGGACAGGTTTGACC CAGGTATTTTACATATTAAATGTTAAAACATTTAAAGTAGACAAACTAAA CTAATATTAGGTATATTTCTTTTTGAGAAGTCCGACTGTTACTAGAAGAG TCAATTGCACTTCAGACAAACAATCATTCCAAAGAATAATTTGCAAATTT CTTTTTTTTTGAAGTGCATTACACAAAGAATAATACAAAGAATTATATGC TATCCTAATATTCAAATCTCAAGATTGGTTCGATTTTTTCCATAGGGGCA AGTTGTGAAACATGGCTGTCCACCGTATGCCTTGTGTTGGGGCNTACAAG AGAAAATTTTTTAACATTTGATACCACAGTATTGTATTATCCTATACTGT GTTAAATGAATGATTTTACTTTACACATCTGCTATAATAATATAATTTAA TGAGAATCAATTTTTACATTAGAGTGCTGTTACATGTTTGGTTTGGCCCC CAGAAAATCAATATATTATTTTTGGTCTTGCTGATGGAAAGGTTTGTGAC TTATGACATTTTGACTTTTATTATATCATGATATAATGATGGATGATATC TCTTTTAGGATTCAAATTTTATAAATTGATGAAGTAAAATAGTTGTCTGT TTGACCATACCTCCTAAATCTATAGGGCTGACAAAATGAATTGCAAAAAA AGTGTTTTTAAAACCAGCCTAATGTCACCCCATAAGTGGCCATTTCTTAG CTGAACAGTTAATTTATTTTTTTGAAAACATATAATTAATTTTACTATAC TCGTGAATTTTAAATATCAAAAGGTGGTCCTAAAAGTCTCAGCTTTCAAG ATGGTTACATTTAAGAGATGGTATTGTTAGGAAAGGGAGATCTACTTTTT AACCTGGAAATATATATTGACGATATAAAGCATACAAACACCTAAAATTT TAGATCACACTTCAAATGATTGAGTTTGAGAATGATTATTTTCTTCATCT TTCTGTAATGTTTTAAAATTTCCATTTTTTTTTAGGTCAGGATGGCAAGT CTAAAAACCAACAAATCACAAACTGTCTATGGAACTGGTATCCATTGTAT ATCTTTGTGTGTCAGGTTGGCATTCTGTTTTAATTACATAAATGATTTTC AAACTATAAAATGAAAGCAATATTACTATTATGTTAAGTCTTTGAAGCTT GTAAATGAAGACATAATTGAGTACAGCTTTCAAGAAACTACTTTAACAAT TCATATTTAAGCATTTTCACAACAGATAATAAACTAAAAATTTTTTTGAA AAAGTTTCATTTAATATAAACATTTTCTTGACTGGACAAATCCAATAACT GTTTCAGGTTAAATTATCTTTGCCATCTGTTCTCTTTTTAGTCCTGATGG GAAAGGTGTTTTGTCAGGGCATGCAGATGGAGCCATTGTCAGATATATGT TTGAAGATACTGGGACAGGTTTGACCCAGGTATTTTACATATTAAATGTT AAAACATTTAAAGTAGACAAACTAAACTAATATTAGGTATATTTCTTTTT GAGAAGTCCGACTGTTACTAGAAGAGTCAATTGCACTTCAGACAAACAAT CATTCCAAAGAATAATTTGCAAATTTCTTTTTTTTTGAAGTGCATTACAC AAAGAATAATACAAAGAATTATATGCTATCCTAATATTCAAATCTCAAGA TTGGTTCGATTTTTTCCATAGGGGCAAGTTGTGAAACATGGCTGTCCACC GTATGCCTTGTGTTGGGGCTCATCAATCATTGCAGCAGGATGTGATAAAA GAATTGTTGCATATGGAAAAGAAGGTATTGTTTTTTGAGCTTATGTTTCA CGAGAAAATCATTTTTATTTAACAAATGATTAATCCTAATATTTCATTTC CCTAAACTCTCTTTAGGGCGGGTATTACAAAACTTCGACTATTCAAAAGA TGATGAGGAAAAAGAGTTCACAGTTGCAATAGCAAGTCCAAGTGGTCAGT CAGTGGTGGTTGGAAGTTATGATAGATTACGTGTTTTCAATTGGAGTCCC CGAAGAGGAGCCTGGGAAGAATCTAAACCAAAAGAGATCAATAATTTATA CACCATCAGCTCACTTTCTTGGAAAAGAGATGGTTCAAGGCTTTGTGCTG TAAGTTAGATAATTCCCTCTTATTTTTTGTCCTGCTGGAATATAGGTTTT AATACATAAAGACAGTTTGACTTACATATGGATGAAAAGTTTCAATTAGT ATTCTACATGCAAATATAAAGAATTTTTTTAAATGGTATTTACAAATATA TCATAATACAGTAGCTAAATCTTACTGAATAATATTATTTCTGACTTCAG GGCACACTCTGTGGTGGAGTTGAACTGTTTGATTGCTGTTTGAGAAGATC TATTTTCAAGAATAAATTTGAAATGACTTATGTTGGGTTGAGCCAGGTAA AATGAAGGATTTTTTGTTATACTTTTGAAGATATTAACCCTTCAACCCTT TCAGACCCGGTACACACGATTTAAATCTGCCAAAATACCAAGTCCTGACC ACTTGATTTAAAAGGGCATACACCGGATGCTGTTAGAAAGAGTACAAAAA TATCTTTTCAATGGTACAAAAACCATTGCCTAAGTCTCAAGTTAAAACCT TTTATGCCAATTTGAAAATTTGGAAAAAATGTTGCGCGCTGGAAAGGTTA AGAAAAAATTAAATAAGAATCTGTATTTTGTAAAAAATATCTAAAAAATT GTCCAGAGGAAAACCAATTTTCTCTGTCTGTGCGAGAGTGTGGAACATAT AACATAGTTGAAAATAACACATCATCTTTCTTATGAAAATTTCTGCCAAC TGGCCTTTTTCAACATAAAAATGAATTTAATGTTCTTCATTCGCCGCTGT GAGGAGACATTCTTAATGTTAGCAAAGGAAAGCTTACGTTCTGCTCTCTA AAGAGCAAATCATCTCGTTTCGGTTCTCTAGCCTTCAGAATTTCTCGACT GACTAGTTGGTCACTATCCTTGTTTTTTTTTAGCCACAGTGCTAGCTGGT TGCAATTGAGGTCAAAAAAAGAAATGTTCTGAACAGATGCGATTCAAGCG CAGGCCCTGGCCATAAGGAATGGCCTTTTTTGAATGAAATGCACAATTAT AAAAAAATATTTAGTTATTTTCACTAACATTACAAATACAAAGAAACTTT GTTATTATTAATGCTAACTGTTGATTTCTAGGTTATTGTCAAAAATTTGG CATCAGGAGCCAGAGTTGTTTTAAAATCACATTATGGATACGAGGTTTGT ATATAAATAATTTTTATAAGTAGAAAATCTATCATCAATATTTCTGCCTA ATCAACTTTTTCTCAAGAATCTGTAATATCATATTTTAAAGTTATATTTC TTGGCCCATTATTATCCCTTGCTGATGTTTTTAGATTGATGAAGTGAAAA TAATGGGGAAGGACNTTGTCCACCGTATGCCTTGTGTTGGGGCTCATCAA TCATTGCAGCAGGATGTGATAAAAGAATTGTTGCATATGGAAAAGAAGGT TTTGTTTTTTGAGCTTATGTTTCACGAGAAAATCATTTTTATTTAACAAA TGATTAATCCTAATATTTCATTTCCCTAAACTCTCTTTAGGGCGGGTATT ACAAAACTTCGACTATTCAAAAGATGATGAGGAAAAAGAGTTCACAGTTG CAATAGCAAGTCCAAGTGGTCAGTCAGTGGTGGTTGGAAGTTATGATAGA TTACGTGTTTTCAATTGGAGTCCCCGAAGAGGAGCCTGGGAAGAATCTAA ACCAAAAGAGATCAATAATTTATACACCATCAGCTCACTTTCTTGGAAAA GAGATGGTTCAAGGCTTTGTGCTGTAAGTTAGATAATTCCCTCTTATTTT TTGTCCTGCTGGAATATAGGTTTTAATACATAAAGACAGTTTGACTTACA TATGGATGAAAAGTTTCAATTACTATTCTACATGCAAATATAAAGAATTT TTTTAAATGGTATTTACAAATATATCATAATACAGTAGCTACATCTTACT GAATAATATTATTTCTGACTTCAGGGCACACTCTGTGGTGGAGTTGAACT GTTTGATTGCTGTTTGAGAAGATCTATTTTCAAGAATAAATTTGAAATGA CTTATGTTGGGTTGAGCCAGGTAAAATGAAGGATTTTTTGTTATACTTTT GAAGATATTAACCCTTCAACCCTTTCAGACCCGGTACACACGATTTAAAT CTGCCAAAATACCAAGTCCTGACCACTTGATTTAAAAGGGCATACACCGG ATGCTGTTAGAAAGAGTACAAAAATATCTTTTCAATGGTACAAAAACCAT TGCCTAACTCTCAAGTTAAAACCTTTTATGCCAATTTGAAAATTTGGAAA AAATGTTGCGCGCTGGAAAGGTTAAGAAAAAATTAAATAAGAATCTGTAT TTTGTAAAAAATATCTAAAAAATTGTCCAGAGGAAAACCAATTTTCTCTG TCTGTGCGAGAGTGTGGAACATATAACATAGTTGAAAATAACACATCATC TTTCTTATGAAAATTTCTGCCAACTGGCCTTTTTCAACATAAAAATGAAT TTAATGTTCTTCATTCGCCGCTGTGAGGAGACATTCTTAATGTTAGCAAA GGAAAGCTTACGTTCTGCTCTCTAAAGAGCAAATCATCTCGTTTCGGTTC TCTAGCCTTCAGAATTTCTCGACTGACTAGTTGGTCACTATCCTTGTTTT TTTTTAGCCACAGTGCTAGCTGGTTGCAATTGAGGTCAAAAAAAGAAATG TTCTGAACAGATGCGATTCAAGCGCAGGCCCTGGCCATAAGGAATGGCCT TTTTTGAATGAAATGCACAATTATAAAAAAATATTTAGTTATTTTCACTA ACATTACAAATACAAAGAAACTTTGTTATTATTAATGCTAACTGTTGATT TCTAGGTTATTGTCAAAAATTTGGCATCAGGAGCCAGAGTTGTTTTAAAA TCACATTATGGATACGAGGTTTGTATATAAATAATTTTTATAAGTAGAAA ATCTATCATCAATATTTCTGCCTAATCAACTTTTTCTCAAGAATCTGTAA TATCATATTTTAAAGTTATATTTCTTGGCCCATTATTATCCCTTGCTGAT GTTTTTAGATTGATGAAGTGAAAATAATGGGGAAGGACAGATTTCTTGTT GGACACACTTCAGAAACATTGCTTGTGGGAGATCTAAACGAAAACAAGCT TAGTGAGGTAAGTTCCTTCCTCAAGAACTATTTTTGAAATTAATATCATA AGATCTTTCAAGTGACATTATGGAACATAAAAAATAACAGAACTTGATTT TGATAATTATACTGTTTTGTTTTTATGATTCAGCTTCCATGGCATAATTC AGGTGGAAATGAGAAGTTCTTCTTTGAAAATGAAACAGTAAGTTTGTTTA AAATTCAATACATTTTTCTTTTGGAAAAAGTAAAACAAAGAAAGTAGATT ACTTCAAAACAATTTTAAATCTTTCAAAGGTTCCTTAGCTTGCCACTGCT AAAATCATACCTTGTTAGCATTACGAGTTTCAGGACTTCTATGTGTTACT TTGTTATTGTTTTAATCAATTAGGTTTGTATGGTATTCAATGCAGGAGAA TTATCTTTGATCGAGTATGGTCAAAATGAAGTGTTAGCTACAGTCAGAAC AGAATTCATGAACCCTCATCTTATAAGGTAATGATTTTTCAAATGCAGAT ATGAAACGATTGTGAAATGTATTCTAGGGTTATGATATTTAGAATTTGAT TTTTGAATAGTCTATTCCATTAAACAAATTTCTTTAGATATTTCAGAATA ATTTACCCTGCTGCCTCACATTCCTGCCTTGGTATTTTTACCGGAAAGAA TTGAAACTCCATTCTTTCTTACCAGCCATCCCTCTGTAAGAACTAGACTG GACGCTAGTCAGTATGATTCTCAATAGCAGTATTTCTTGACTTAACTTTT TCAGCGTACGTTTGAATGAAAGAAAGCTGAAAGATCAAGAAGACAATAAA AAATTGGGTTATTTGATTGACCTGAAAACTATATGTGTCAGTAAGTAAAC GTTTTGTAAAAAATCGACTATTTTGGCATTATTAGCAGCATTTCTCATTT CTATCGGGTGAATACAGATTTGAAATATTTGGGCTATTATGCTAAGCTCA GTTGTAAATTAGCCTTAGGATTTTAGTTTTTTTTTACTTTAAATTTCTTT AATTTTCAGTGGACTTGATGTCAGGGATGGTTGTAGCCAATATTTCACAT GATGTCAAAATTGACTGGTTAGAGGTACTCCACTCTCATCTCTTATTGTC TCTAAGTTATGAATTTCCAAGATAATATATTTATATTTAGATGCAAATCT CAAGAGTTTGAGTGGTTGACAAATCTTGAATTTTCTCTGTTTATAGATGA ATGAGACTGGAAAGAAGCTCTTATTCCGAGACAAAAAACTGAGGGTAAGT AATTTAGATAATTTCCGATACTCTTCCTCAAATTAGGACAGTTGTTTTAA AGTGTGAAGTGATTTCTGGTTTCAACTTCTAATTATAGTACACTTACCTC TCAACTTTTAGTTATTATTGGCAGATATTCAAAGTGAAACAAAAACCACT ATTTCTACATATTGCTCTTATGTGCAATGGGTGCCTTTGAGTGATGTTGT GGTAGCTCAAAGCAGAAGCGATCTTTGTGTTTGGTACAATATTGAATCAC CTGAACGAGTGACTATCGTTCCCATCAAAGTAAGAGACCATTTTGTTCAT TTCCTCTCAAAGGCTTAACGGCGATCAAAAATAAACTATTTAAAAACTAT TTTTTATGTCTTTTGATTCTTTCTAATGACTTGTAATAATGACTTGTAAT TTGAGGGGTCGTTTGTTAAATTTGGTCAACTAGGTAAAAAGCTATGGCCT AAATGCTAAAATATTACTTTTCAAAAAAGTAAAAAAAATGGCGAAAAATG AGGGTATTAAATCATCATAAAGATATCATAAAGAAATCTTTCTTTTATCA ATTTATTAACGATCGAAGTCTCTTCGTCCTCTTCGTGGCCAGTTTCCAAG AAAGGTGGTCAACAATCGAGGAGATGTTGAGTGACCCCTAAGTTCGCCTG AGCTTACAGTGTGTGATTTCTTTTTGTGGGGTTACACGAAACAAGAAATC TGGGAGCAACTCACAAATTTGCAATTCCAGACCCTTGATCAATGAAAGCT TCAATCAAATATGAAGACTTGGCAAATCGATTTTATATTATTTTCTCATG ATAAAAAATTACATTAATTGACTTTGTGACCCTTGTTTTACACGGTTTAG CCTACGATCGAGGCACCCTTATTCTGGATTTGTTATTCGAATTTCAAATC AAAGTTGAAAAGACACTGGTTTGGAATGTTAAGTTAAACTTTCCTTGCAT GTTTAGGGTGACATCACAGACCTTGAGAAGATCGAGGGTAAAACAAACGT GATCGTACAAGAAGGTGTACAATCGATCAATTACACATTAGACGAAGGGC TAATCGAGTTTGGAACTGCTATGGAAGATGGTGATTATGCTAGGTTTGTC TTATTGGTTATTTTAATTAGATTTTAAGACATTGATCTTCTAATGCTGCA GCAAATTTTTTAACATAAACAAACTTATTAAGATAAGGGTTATTTTTTAT TGAGATTTTCTTCTCAAAATGCTTCAACTGAGAGATTTTACCTGTCGTCT TTTCTTCGTTGTATTACTTTTTTTTGCTCAGAAATCTGATATAAAATTGT ATTTTGTTCAGGGCTGTTTCGTTTCTGGAAGGATTGGAGATGTCACCTGA AACAGAAGCTATGTGGAAGACTCTCAGCAAGGTTGCCATGGAGAATAAAG AGCTTTTCATCGCCGAAAGGTAAGACATAAATATGATCCAACAATCATGA TTCAATGCATAGTCCGAAACATTTTTTCTACAAAGGCTCTTTTAAGAGGA TTCTGTAATGGGGTTCTTAAACTTTTCAAAATATATTTTTGCTTTGTAGG TGTTTTGCTGCACTAGGAGATGTTTCTAAAGCTCGCTATTTACGTGGAAT CAACGACTTGATCGATGAACTGAACCCAAGTTATGGAGATCCTATGTATC ATCCGACTATTCGCGCCAAACTGGCCATTTTTGAGAAACAATTCAAACTT GCAGAAAGTATTTACTTGGAACAAGGACAAGTTGATGAAGCGATGGAGAT GTACCAAGAAGTTCACAAGTGGGATGAATCTTTGGCCATCGCCGAAGCCA AAAGACATCCAGAACTAGAGAACCTTAGAAGCTATTACTTGCAATATTTG ATGAAGTCAGGCCAAGAAGAAAAAGCTGGAGAGGTTAAAACCTTGAATTT AGTTAACAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000661XLOC_000661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001219-exon-sc0000007-1575043694:1147551..1147608TCONS_00001219-exon-sc0000007-1575043694:1147551..1147608Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1147213..1147356TCONS_00001219-exon-sc0000007-1575043694:1147213..1147356Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1146533..1146645TCONS_00001219-exon-sc0000007-1575043694:1146533..1146645Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1146360..1146399TCONS_00001219-exon-sc0000007-1575043694:1146360..1146399Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1146129..1146197TCONS_00001219-exon-sc0000007-1575043694:1146129..1146197Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1145570..1145649TCONS_00001219-exon-sc0000007-1575043694:1145570..1145649Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1145206..1145293TCONS_00001219-exon-sc0000007-1575043694:1145206..1145293Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1143435..1143537TCONS_00001219-exon-sc0000007-1575043694:1143435..1143537Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1143110..1143342TCONS_00001219-exon-sc0000007-1575043694:1143110..1143342Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1141089..1141184TCONS_00001219-exon-sc0000007-1575043694:1141089..1141184Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1140241..1140303TCONS_00001219-exon-sc0000007-1575043694:1140241..1140303Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1140002..1140100TCONS_00001219-exon-sc0000007-1575043694:1140002..1140100Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1139822..1139875TCONS_00001219-exon-sc0000007-1575043694:1139822..1139875Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1139532..1139635TCONS_00001219-exon-sc0000007-1575043694:1139532..1139635Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1139169..1139254TCONS_00001219-exon-sc0000007-1575043694:1139169..1139254Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1138935..1138999TCONS_00001219-exon-sc0000007-1575043694:1138935..1138999Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1138765..1138812TCONS_00001219-exon-sc0000007-1575043694:1138765..1138812Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1138480..1138647TCONS_00001219-exon-sc0000007-1575043694:1138480..1138647Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1137666..1137802TCONS_00001219-exon-sc0000007-1575043694:1137666..1137802Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1137340..1137447TCONS_00001219-exon-sc0000007-1575043694:1137340..1137447Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1575043694:1136849..1137209TCONS_00001219-exon-sc0000007-1575043694:1136849..1137209Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1147551..1147608TCONS_00001219-exon-sc0000007-1510915933:1147551..1147608Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1147213..1147356TCONS_00001219-exon-sc0000007-1510915933:1147213..1147356Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1146533..1146645TCONS_00001219-exon-sc0000007-1510915933:1146533..1146645Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1146360..1146399TCONS_00001219-exon-sc0000007-1510915933:1146360..1146399Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1146129..1146197TCONS_00001219-exon-sc0000007-1510915933:1146129..1146197Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1145570..1145649TCONS_00001219-exon-sc0000007-1510915933:1145570..1145649Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1145206..1145293TCONS_00001219-exon-sc0000007-1510915933:1145206..1145293Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1143435..1143537TCONS_00001219-exon-sc0000007-1510915933:1143435..1143537Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1143110..1143342TCONS_00001219-exon-sc0000007-1510915933:1143110..1143342Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1141089..1141184TCONS_00001219-exon-sc0000007-1510915933:1141089..1141184Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1140241..1140303TCONS_00001219-exon-sc0000007-1510915933:1140241..1140303Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1140002..1140100TCONS_00001219-exon-sc0000007-1510915933:1140002..1140100Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1139822..1139875TCONS_00001219-exon-sc0000007-1510915933:1139822..1139875Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1139532..1139635TCONS_00001219-exon-sc0000007-1510915933:1139532..1139635Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1139169..1139254TCONS_00001219-exon-sc0000007-1510915933:1139169..1139254Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1138935..1138999TCONS_00001219-exon-sc0000007-1510915933:1138935..1138999Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1138765..1138812TCONS_00001219-exon-sc0000007-1510915933:1138765..1138812Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1138480..1138647TCONS_00001219-exon-sc0000007-1510915933:1138480..1138647Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1137666..1137802TCONS_00001219-exon-sc0000007-1510915933:1137666..1137802Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1137340..1137447TCONS_00001219-exon-sc0000007-1510915933:1137340..1137447Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1510915933:1136849..1137209TCONS_00001219-exon-sc0000007-1510915933:1136849..1137209Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1147551..1147608TCONS_00001219-exon-sc0000007-1491911889:1147551..1147608Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1147213..1147356TCONS_00001219-exon-sc0000007-1491911889:1147213..1147356Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1146533..1146645TCONS_00001219-exon-sc0000007-1491911889:1146533..1146645Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1146360..1146399TCONS_00001219-exon-sc0000007-1491911889:1146360..1146399Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1146129..1146197TCONS_00001219-exon-sc0000007-1491911889:1146129..1146197Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1145570..1145649TCONS_00001219-exon-sc0000007-1491911889:1145570..1145649Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1145206..1145293TCONS_00001219-exon-sc0000007-1491911889:1145206..1145293Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1143435..1143537TCONS_00001219-exon-sc0000007-1491911889:1143435..1143537Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1143110..1143342TCONS_00001219-exon-sc0000007-1491911889:1143110..1143342Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1141089..1141184TCONS_00001219-exon-sc0000007-1491911889:1141089..1141184Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1140241..1140303TCONS_00001219-exon-sc0000007-1491911889:1140241..1140303Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1140002..1140100TCONS_00001219-exon-sc0000007-1491911889:1140002..1140100Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1139822..1139875TCONS_00001219-exon-sc0000007-1491911889:1139822..1139875Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1139532..1139635TCONS_00001219-exon-sc0000007-1491911889:1139532..1139635Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1139169..1139254TCONS_00001219-exon-sc0000007-1491911889:1139169..1139254Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1138935..1138999TCONS_00001219-exon-sc0000007-1491911889:1138935..1138999Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1138765..1138812TCONS_00001219-exon-sc0000007-1491911889:1138765..1138812Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1138480..1138647TCONS_00001219-exon-sc0000007-1491911889:1138480..1138647Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1137666..1137802TCONS_00001219-exon-sc0000007-1491911889:1137666..1137802Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1137340..1137447TCONS_00001219-exon-sc0000007-1491911889:1137340..1137447Clytia hemisphaericaexon
TCONS_00001219-exon-sc0000007-1491911889:1136849..1137209TCONS_00001219-exon-sc0000007-1491911889:1136849..1137209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1136849..1147608 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000165929 4.06035e-06 1.27535e-08 2.3593e-07 1.17209e-06 0 0.000228403 1.32943e-07 2.19899e-08 2.19877e-08 4.95153e-08 3.2323e-08 0 0 0 0 2.07966e-10 1.23698e-08 0 2.58146e-09 1.60984e-10 0 8.55089e-07 3.14726e-08 7.00989e-10 7.4278e-08 0 1.55926e-05 1.81603e-05 1.50637e-08
Blast
BLAST of TCONS_00001219 vs. Swiss-Prot (Human)
Match: IF172 (Intraflagellar transport protein 172 homolog OS=Homo sapiens GN=IFT172 PE=1 SV=2)

HSP 1 Score: 1090.49 bits (2819), Expect = 0.000e+0
Identity = 510/761 (67.02%), Postives = 636/761 (83.57%), Query Frame = 2
Query:   20 MQLKHLKTTLAPQDGAAKITAMAWAPNNTKMAIVSTDRVVVLFDEHGEKRDKFGTKPGDAKTGKKGYQVKGLAFSPDSTKIAVGQTDNIVFVYKIGDEWGERKVICNKFLQQSAVTCLVWPPENQYIIFGLADGKVRMASLKTNKSQTVYGTGIHCISLCVSPDGKGVLSGHADGAIVRYMFEDTGTGLTQGQVVKHGCPPYALCWGS-SIIAAGCDKRIVAYGKEGRVLQNFDYSKDDEEKEFTVAIASPSGQSVVVGSYDRLRVFNWSPRRGAWEESKPKEINNLYTISSLSWKRDGSRLCAGTLCGGVELFDCCLRRSIFKNKFEMTYVGLSQVIVKNLASGARVVLKSHYGYEIDEVKIMGKDRFLVGHTSETLLVGDLNENKLSELPWHNSGGNEKFFFENETVCMVFNAGELSLIEYGQNEVLATVRTEFMNPHLISVRLNERKLKDQEDNKKLGYLIDLKTICVMDLMSGMVVANISHDVKIDWLEMNETGXXXXXXXXXXXXXXADIQSETKTTISTYCSYVQWVPLSDVVVAQSRSDLCVWYNIESPERVTIVPIKGDITDLEKIEGKTNVIVQEGVQSINYTLDEGLIEFGTAMEDGDYARAVSFLEGLEMSPETEAMWKTLSKVAMENKELFIAERCFAALGDVSKARYLRGINDLIDELNPSY-GDPMYHPTIRAKLAIFEKQFKLAESIYLEQGQVDEAMEMYQEVHKWDESLAIAEAKRHPELENLRSYYLQYLMKSGQEEKAGEVK 2296
            M LKHL+T L+PQDGAAK+T MAW+ NN K A+ + DRVV+L+DEHGE+RDKF TKP D K G+K Y VKG+AFSPDSTKIA+GQTDNI++VYKIG++WG++KVICNKF+Q SAVTCL WP E   I+FGLA+GKVR+A+ KTNKS T+YGT  + +SL  +  GKG+LSGHADG IVRY F+D G+G +QG++V H CPPYAL W + SI+AAGCD++IVAYGKEG +LQ FDYS+D +E+EFT A++SP GQSVV+GSYDRLRVFNW PRR  WEE+KPKEI NLYTI++L+WKRDGSRLC GTLCGGVE FDCCLRRSI+KNKFE+TYVG SQVIVKNL+SG RVVLKSHYGYE++EVKI+GK+R+LV HTSETLL+GDLN N+LSE+ W  SGGNEK+FFENE VCM+FNAGEL+L+EYG N+ L +VRTEFMNPHLISVR+NER  +  EDNKKL YLID+KTI ++DL+ G  +  +SH+ ++DWLE+NETG KLLFRD+KLRL L DI+S +KT I  +CSY+QWVP SDV+VAQ+R+ LCVWYNIE+PERVT+  I+GD+  LE+  GKT V+V EGV ++ YTLDEGLIEFGTA++DG+Y RA +FLE LEM+PETEAMWKTLSK+A+E ++L IAERCF+ALG V+KAR+L   N++ D+++  Y G+      +RA+LA+ EK +KLAE I+LEQ  V+EAM MYQE+H+WDE +A+AEAK HP LE LR  Y Q+LM + QEE+AGE++
Sbjct:    1 MHLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCTVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAE-YIIVFGLAEGKVRLANTKTNKSSTIYGTESYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRKIVAYGKEGHMLQTFDYSRDPQEREFTTAVSSPGGQSVVLGSYDRLRVFNWIPRRSIWEEAKPKEITNLYTITALAWKRDGSRLCVGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSETLLLGDLNTNRLSEIAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGNNDTLGSVRTEFMNPHLISVRINERCQRGTEDNKKLAYLIDIKTIAIVDLIGGYNIGTVSHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILNFCSYMQWVPGSDVLVAQNRNSLCVWYNIEAPERVTMFTIRGDVIGLERGGGKTEVMVMEGVTTVAYTLDEGLIEFGTAIDDGNYIRATAFLETLEMTPETEAMWKTLSKLALEARQLHIAERCFSALGQVAKARFLHETNEIADQVSREYGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMGMYQELHRWDECIAVAEAKGHPALEKLRRSYYQWLMDTQQEERAGELQ 760          
The following BLAST results are available for this feature:
BLAST of TCONS_00001219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF1720.000e+067.02Intraflagellar transport protein 172 homolog OS=Ho... [more]
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