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TCONS_00001212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001212
Unique NameTCONS_00001212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length913

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001212 ID=TCONS_00001212|Name=TCONS_00001212|organism=Clytia hemisphaerica|type=transcript|length=913bp
CCGAGTCATAAAGCTGTTCGAACCACCAAATCTGCACCAACAAAGAATGC
ACGTACACCGGCCGATCAACAGgTGGCGCACCAGAGACCAGGACAATATT
CTTCTCCGAAGGTTCAACGAGTGGCCGGCAAAAAGCCCTCTTCAACGCAG
GCAACGTCAGGTCTAACCATGTCAAGTTACACGCAAAGTCACGCCTCTGT
CAGTAAAAGTACACTGGATGCAATCCATGGACTGTCAATCAAATAGGGCT
GTTGAAATAATGACAAACAATCTATTATAATGCACTTATTGAAATGAAAC
GGAAAAAAGTTTCCCCGAAAAGTCAATGAGTACGAGAATATTTAGTCCGC
ACTTTATTGTCAGAACCNCTTCTTCCGAAAAGTCAATGAGTACGAGAATA
TTAAGTCCACCCTTTATTGTCAGAACCTTAAAATTGACGATTCTTCGTAA
GATTCTTAGTTTTctttgaaacatttttgtaaaGTCTTTATCTGCGACAT
TTTACTTCGAATTTAGTCTTTTTCAACCAGAGTTAGGGTCTTGACTTAAA
ATGATTTTAACAGAAAATAAAGgggagaaaattgaaaatatttaagttaA
ATTATACTCagtagagaaatctattttgatgtttttgtgtAAATGCGCGT
ATTGTATcataaattttttgtcaattttttagaTGTAATATTACATTAGt
agagaaatttttatttcatggcttttaattcaattttttaagaaagtcTT
CGAAGACAAACATTTCAGTCGAATTTCCACACGTACAACGTTTCAAGGTC
TCATTGATGGAGGTCCCTGAAACTCAATTTTTAGATGTTGTTAGAAATCA
AAATGTATAGAAAGTTTTTGTACATGCATTTTAATTTTATGCTCAAGAAA
TACAAActtcaaa
Run BLAST on NCBI

transcript from alignment at sc0000007:1086988..1088478-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001212 ID=TCONS_00001212|Name=TCONS_00001212|organism=Clytia hemisphaerica|type=transcript|length=1491bp|location=Sequence derived from alignment at sc0000007:1086988..1088478- (Clytia hemisphaerica)
CCGAGTCATAAAGCTGTTCGAACCACCAAATCTGCACCAACAAAGAATGC ACGTACACCGGCCGATCAACAGGTATTTATGGTCTTCCTCTAAAACCTTG AATTCAATGCACTTTCAACATTTAATGATCCATCACCATCAGACATCCAT ACATGATTACTGTTCACAACCTCATACATTCCACCTTTTCCGTCCACACA CATTTCTAATAAAATTGACCCTTCTCTCTTTTCCTTTTGTAGACTTACAA ATCCAGCCCTTCCAACATGCGTTCTCGTCCTATCTCATCACAGTATGATA GAAAAGCTAATAATAATATCCTGACGCGCCCAGATAACAATTTACAGATT ACCAGTACCTCCAAAGTAAGACATTTTTTGTAATTCCTTCCCTTTCACAA CCCTTGTTCCAATTCACCCATCCTCCCCATGTCATCGACAATGTTTTATG ACGGCTGACACTTATGTGTAAAGGAAAGACCAGAACAATTTGCCATCCTT TTGTTTAATGGATTCATCAAACTCCTCAAAGCCTCTTTTCATAATTCTTG CAAGTCAGTTTTCCATGGTATAAGGCTCTAACAGTCAGTATGGATTTACT CATTCGAGTGTGAAACTTTTCGATCTGAATAACTTTTTTGTTTTCATTAG GTGGCGCACCAGAGACCAGGACAATATTCTTCTCCGAAGGTTCAACGAGT GGCCGGCAAAAAGCCCTCTTCAACGCAGGCAACGTCAGGTCTAACCATGT CAAGTTACACGCAAAGTCACGCCTCTGTCAGTAAAAGTACACTGGATGCA ATCCATGGACTGTCAATCAAATAGGGCTGTTGAAATAATGACAAACAATC TATTATAATGCACTTATTGAAATGAAACGGAAAAAAGTTTCCCCGAAAAG TCAATGAGTACGAGAATATTTAGTCCGCACTTTATTGTCAGAACCNCTTC TTCCGAAAAGTCAATGAGTACGAGAATATTAAGTCCACCCTTTATTGTCA GAACCTTAAAATTGACGATTCTTCGTAAGATTCTTAGTTTTCTTTGAAAC ATTTTTGTAAAGTCTTTATCTGCGACATTTTACTTCGAATTTAGTCTTTT TCAACCAGAGTTAGGGTCTTGACTTAAAATGATTTTAACAGAAAATAAAG GGGAGAAAATTGAAAATATTTAAGTTAAATTATACTCAGTAGAGAAATCT ATTTTGATGTTTTTGTGTAAATGCGCGTATTGTATCATAAATTTTTTGTC AATTTTTTAGATGTAATATTACATTAGTAGAGAAATTTTTATTTCATGGC TTTTAATTCAATTTTTTAAGAAAGTCTTCGAAGACAAACATTTCAGTCGA ATTTCCACACGTACAACGTTTCAAGGTCTCATTGATGGAGGTCCCTGAAA CTCAATTTTTAGATGTTGTTAGAAATCAAAATGTATAGAAAGTTTTTGTA CATGCATTTTAATTTTATGCTCAAGAAATACAAACTTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000658XLOC_000658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001212-exon-sc0000007-1575043694:1088407..1088478TCONS_00001212-exon-sc0000007-1575043694:1088407..1088478Clytia hemisphaericaexon
TCONS_00001212-exon-sc0000007-1575043694:1086988..1087828TCONS_00001212-exon-sc0000007-1575043694:1086988..1087828Clytia hemisphaericaexon
TCONS_00001212-exon-sc0000007-1510915933:1088407..1088478TCONS_00001212-exon-sc0000007-1510915933:1088407..1088478Clytia hemisphaericaexon
TCONS_00001212-exon-sc0000007-1510915933:1086988..1087828TCONS_00001212-exon-sc0000007-1510915933:1086988..1087828Clytia hemisphaericaexon
TCONS_00001212-exon-sc0000007-1491911889:1088407..1088478TCONS_00001212-exon-sc0000007-1491911889:1088407..1088478Clytia hemisphaericaexon
TCONS_00001212-exon-sc0000007-1491911889:1086988..1087828TCONS_00001212-exon-sc0000007-1491911889:1086988..1087828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1086988..1088478 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.416364 0 0.571686 1.47885 0.431269 0 0 0 0.141808 0.218265 0 0.0977685 0.256703 0.177611 0.23011 0.0825827 0 0.401048 0.864692 0.287973 0.46301 0.42566 0.41915 0.824004 0 0 1.07062 0.894905 0 0.396359
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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