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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001211 ID=TCONS_00001211|Name=TCONS_00001211|organism=Clytia hemisphaerica|type=transcript|length=1034bp
GAGTCATAAAGCTGTTCGAACCACCAAATCTGCACCAACAAAGAATGCAC
GTACACCGGCCGATCAACAGACTTACAAATCCAGCCCTTCCAACATGCGT
TCTCGTCCTATCTCATCACAGTATGATAGAAAAGCTAATAATAATATCCT
GACGCGCCCAGATAACAATTTACAGATTACCAGTACCTCCAAAgTGGCGC
ACCAGAGACCAGGACAATATTCTTCTCCGAAGGTTCAACGAGTGGCCGGC
AAAAAGCCCTCTTCAACGCAGGCAACGTCAGGTCTAACCATGTCAAGTTA
CACGCAAAGTCACGCCTCTGTCAGTAAAAGTACACTGGATGCAATCCATG
GACTGTCAATCAAATAGGGCTGTTGAAATAATGACAAACAATCTATTATA
ATGCACTTATTGAAATGAAACGGAAAAAAGTTTCCCCGAAAAGTCAATGA
GTACGAGAATATTTAGTCCGCACTTTATTGTCAGAACCNCTTCTTCCGAA
AAGTCAATGAGTACGAGAATATTAAGTCCACCCTTTATTGTCAGAACCTT
AAAATTGACGATTCTTCGTAAGATTCTTAGTTTTctttgaaacatttttg
taaaGTCTTTATCTGCGACATTTTACTTCGAATTTAGTCTTTTTCAACCA
GAGTTAGGGTCTTGACTTAAAATGATTTTAACAGAAAATAAAGgggagaa
aattgaaaatatttaagttaAATTATACTCagtagagaaatctattttga
tgtttttgtgtAAATGCGCGTATTGTATcataaattttttgtcaattttt
tagaTGTAATATTACATTAGtagagaaatttttatttcatggcttttaat
tcaattttttaagaaagtcTTCGAAGACAAACATTTCAGTCGAATTTCCA
CACGTACAACGTTTCAAGGTCTCATTGATGGAGGTCCCTGAAACTCAATT
TTTAGATGTTGTTAGAAATCAAAATGTATAGAAAGTTTTTGTACATGCAT
TTTAATTTTATGCTCAAGAAATACAAActtcaaa Run BLAST on NCBI transcript from alignment at sc0000007:1086988..1088476- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001211 ID=TCONS_00001211|Name=TCONS_00001211|organism=Clytia hemisphaerica|type=transcript|length=1489bp|location=Sequence derived from alignment at sc0000007:1086988..1088476- (Clytia hemisphaerica)
GAGTCATAAAGCTGTTCGAACCACCAAATCTGCACCAACAAAGAATGCAC
GTACACCGGCCGATCAACAGGTATTTATGGTCTTCCTCTAAAACCTTGAA
TTCAATGCACTTTCAACATTTAATGATCCATCACCATCAGACATCCATAC
ATGATTACTGTTCACAACCTCATACATTCCACCTTTTCCGTCCACACACA
TTTCTAATAAAATTGACCCTTCTCTCTTTTCCTTTTGTAGACTTACAAAT
CCAGCCCTTCCAACATGCGTTCTCGTCCTATCTCATCACAGTATGATAGA
AAAGCTAATAATAATATCCTGACGCGCCCAGATAACAATTTACAGATTAC
CAGTACCTCCAAAGTAAGACATTTTTTGTAATTCCTTCCCTTTCACAACC
CTTGTTCCAATTCACCCATCCTCCCCATGTCATCGACAATGTTTTATGAC
GGCTGACACTTATGTGTAAAGGAAAGACCAGAACAATTTGCCATCCTTTT
GTTTAATGGATTCATCAAACTCCTCAAAGCCTCTTTTCATAATTCTTGCA
AGTCAGTTTTCCATGGTATAAGGCTCTAACAGTCAGTATGGATTTACTCA
TTCGAGTGTGAAACTTTTCGATCTGAATAACTTTTTTGTTTTCATTAGGT
GGCGCACCAGAGACCAGGACAATATTCTTCTCCGAAGGTTCAACGAGTGG
CCGGCAAAAAGCCCTCTTCAACGCAGGCAACGTCAGGTCTAACCATGTCA
AGTTACACGCAAAGTCACGCCTCTGTCAGTAAAAGTACACTGGATGCAAT
CCATGGACTGTCAATCAAATAGGGCTGTTGAAATAATGACAAACAATCTA
TTATAATGCACTTATTGAAATGAAACGGAAAAAAGTTTCCCCGAAAAGTC
AATGAGTACGAGAATATTTAGTCCGCACTTTATTGTCAGAACCNCTTCTT
CCGAAAAGTCAATGAGTACGAGAATATTAAGTCCACCCTTTATTGTCAGA
ACCTTAAAATTGACGATTCTTCGTAAGATTCTTAGTTTTCTTTGAAACAT
TTTTGTAAAGTCTTTATCTGCGACATTTTACTTCGAATTTAGTCTTTTTC
AACCAGAGTTAGGGTCTTGACTTAAAATGATTTTAACAGAAAATAAAGGG
GAGAAAATTGAAAATATTTAAGTTAAATTATACTCAGTAGAGAAATCTAT
TTTGATGTTTTTGTGTAAATGCGCGTATTGTATCATAAATTTTTTGTCAA
TTTTTTAGATGTAATATTACATTAGTAGAGAAATTTTTATTTCATGGCTT
TTAATTCAATTTTTTAAGAAAGTCTTCGAAGACAAACATTTCAGTCGAAT
TTCCACACGTACAACGTTTCAAGGTCTCATTGATGGAGGTCCCTGAAACT
CAATTTTTAGATGTTGTTAGAAATCAAAATGTATAGAAAGTTTTTGTACA
TGCATTTTAATTTTATGCTCAAGAAATACAAACTTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001211-exon-sc0000007-1575043694:1088407..1088476 | TCONS_00001211-exon-sc0000007-1575043694:1088407..1088476 | Clytia hemisphaerica | exon |
| TCONS_00001211-exon-sc0000007-1575043694:1088114..1088236 | TCONS_00001211-exon-sc0000007-1575043694:1088114..1088236 | Clytia hemisphaerica | exon |
| TCONS_00001211-exon-sc0000007-1575043694:1086988..1087828 | TCONS_00001211-exon-sc0000007-1575043694:1086988..1087828 | Clytia hemisphaerica | exon |
| TCONS_00001211-exon-sc0000007-1510915933:1088407..1088476 | TCONS_00001211-exon-sc0000007-1510915933:1088407..1088476 | Clytia hemisphaerica | exon |
| TCONS_00001211-exon-sc0000007-1510915933:1088114..1088236 | TCONS_00001211-exon-sc0000007-1510915933:1088114..1088236 | Clytia hemisphaerica | exon |
| TCONS_00001211-exon-sc0000007-1510915933:1086988..1087828 | TCONS_00001211-exon-sc0000007-1510915933:1086988..1087828 | Clytia hemisphaerica | exon |
| TCONS_00001211-exon-sc0000007-1491911889:1088407..1088476 | TCONS_00001211-exon-sc0000007-1491911889:1088407..1088476 | Clytia hemisphaerica | exon |
| TCONS_00001211-exon-sc0000007-1491911889:1088114..1088236 | TCONS_00001211-exon-sc0000007-1491911889:1088114..1088236 | Clytia hemisphaerica | exon |
| TCONS_00001211-exon-sc0000007-1491911889:1086988..1087828 | TCONS_00001211-exon-sc0000007-1491911889:1086988..1087828 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:1086988..1088476 - |
Blast
The following BLAST results are available for this feature:
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