Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00001211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001211
Unique NameTCONS_00001211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1034

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001211 ID=TCONS_00001211|Name=TCONS_00001211|organism=Clytia hemisphaerica|type=transcript|length=1034bp
GAGTCATAAAGCTGTTCGAACCACCAAATCTGCACCAACAAAGAATGCAC
GTACACCGGCCGATCAACAGACTTACAAATCCAGCCCTTCCAACATGCGT
TCTCGTCCTATCTCATCACAGTATGATAGAAAAGCTAATAATAATATCCT
GACGCGCCCAGATAACAATTTACAGATTACCAGTACCTCCAAAgTGGCGC
ACCAGAGACCAGGACAATATTCTTCTCCGAAGGTTCAACGAGTGGCCGGC
AAAAAGCCCTCTTCAACGCAGGCAACGTCAGGTCTAACCATGTCAAGTTA
CACGCAAAGTCACGCCTCTGTCAGTAAAAGTACACTGGATGCAATCCATG
GACTGTCAATCAAATAGGGCTGTTGAAATAATGACAAACAATCTATTATA
ATGCACTTATTGAAATGAAACGGAAAAAAGTTTCCCCGAAAAGTCAATGA
GTACGAGAATATTTAGTCCGCACTTTATTGTCAGAACCNCTTCTTCCGAA
AAGTCAATGAGTACGAGAATATTAAGTCCACCCTTTATTGTCAGAACCTT
AAAATTGACGATTCTTCGTAAGATTCTTAGTTTTctttgaaacatttttg
taaaGTCTTTATCTGCGACATTTTACTTCGAATTTAGTCTTTTTCAACCA
GAGTTAGGGTCTTGACTTAAAATGATTTTAACAGAAAATAAAGgggagaa
aattgaaaatatttaagttaAATTATACTCagtagagaaatctattttga
tgtttttgtgtAAATGCGCGTATTGTATcataaattttttgtcaattttt
tagaTGTAATATTACATTAGtagagaaatttttatttcatggcttttaat
tcaattttttaagaaagtcTTCGAAGACAAACATTTCAGTCGAATTTCCA
CACGTACAACGTTTCAAGGTCTCATTGATGGAGGTCCCTGAAACTCAATT
TTTAGATGTTGTTAGAAATCAAAATGTATAGAAAGTTTTTGTACATGCAT
TTTAATTTTATGCTCAAGAAATACAAActtcaaa
Run BLAST on NCBI

transcript from alignment at sc0000007:1086988..1088476-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001211 ID=TCONS_00001211|Name=TCONS_00001211|organism=Clytia hemisphaerica|type=transcript|length=1489bp|location=Sequence derived from alignment at sc0000007:1086988..1088476- (Clytia hemisphaerica)
GAGTCATAAAGCTGTTCGAACCACCAAATCTGCACCAACAAAGAATGCAC GTACACCGGCCGATCAACAGGTATTTATGGTCTTCCTCTAAAACCTTGAA TTCAATGCACTTTCAACATTTAATGATCCATCACCATCAGACATCCATAC ATGATTACTGTTCACAACCTCATACATTCCACCTTTTCCGTCCACACACA TTTCTAATAAAATTGACCCTTCTCTCTTTTCCTTTTGTAGACTTACAAAT CCAGCCCTTCCAACATGCGTTCTCGTCCTATCTCATCACAGTATGATAGA AAAGCTAATAATAATATCCTGACGCGCCCAGATAACAATTTACAGATTAC CAGTACCTCCAAAGTAAGACATTTTTTGTAATTCCTTCCCTTTCACAACC CTTGTTCCAATTCACCCATCCTCCCCATGTCATCGACAATGTTTTATGAC GGCTGACACTTATGTGTAAAGGAAAGACCAGAACAATTTGCCATCCTTTT GTTTAATGGATTCATCAAACTCCTCAAAGCCTCTTTTCATAATTCTTGCA AGTCAGTTTTCCATGGTATAAGGCTCTAACAGTCAGTATGGATTTACTCA TTCGAGTGTGAAACTTTTCGATCTGAATAACTTTTTTGTTTTCATTAGGT GGCGCACCAGAGACCAGGACAATATTCTTCTCCGAAGGTTCAACGAGTGG CCGGCAAAAAGCCCTCTTCAACGCAGGCAACGTCAGGTCTAACCATGTCA AGTTACACGCAAAGTCACGCCTCTGTCAGTAAAAGTACACTGGATGCAAT CCATGGACTGTCAATCAAATAGGGCTGTTGAAATAATGACAAACAATCTA TTATAATGCACTTATTGAAATGAAACGGAAAAAAGTTTCCCCGAAAAGTC AATGAGTACGAGAATATTTAGTCCGCACTTTATTGTCAGAACCNCTTCTT CCGAAAAGTCAATGAGTACGAGAATATTAAGTCCACCCTTTATTGTCAGA ACCTTAAAATTGACGATTCTTCGTAAGATTCTTAGTTTTCTTTGAAACAT TTTTGTAAAGTCTTTATCTGCGACATTTTACTTCGAATTTAGTCTTTTTC AACCAGAGTTAGGGTCTTGACTTAAAATGATTTTAACAGAAAATAAAGGG GAGAAAATTGAAAATATTTAAGTTAAATTATACTCAGTAGAGAAATCTAT TTTGATGTTTTTGTGTAAATGCGCGTATTGTATCATAAATTTTTTGTCAA TTTTTTAGATGTAATATTACATTAGTAGAGAAATTTTTATTTCATGGCTT TTAATTCAATTTTTTAAGAAAGTCTTCGAAGACAAACATTTCAGTCGAAT TTCCACACGTACAACGTTTCAAGGTCTCATTGATGGAGGTCCCTGAAACT CAATTTTTAGATGTTGTTAGAAATCAAAATGTATAGAAAGTTTTTGTACA TGCATTTTAATTTTATGCTCAAGAAATACAAACTTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000658XLOC_000658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001211-exon-sc0000007-1575043694:1088407..1088476TCONS_00001211-exon-sc0000007-1575043694:1088407..1088476Clytia hemisphaericaexon
TCONS_00001211-exon-sc0000007-1575043694:1088114..1088236TCONS_00001211-exon-sc0000007-1575043694:1088114..1088236Clytia hemisphaericaexon
TCONS_00001211-exon-sc0000007-1575043694:1086988..1087828TCONS_00001211-exon-sc0000007-1575043694:1086988..1087828Clytia hemisphaericaexon
TCONS_00001211-exon-sc0000007-1510915933:1088407..1088476TCONS_00001211-exon-sc0000007-1510915933:1088407..1088476Clytia hemisphaericaexon
TCONS_00001211-exon-sc0000007-1510915933:1088114..1088236TCONS_00001211-exon-sc0000007-1510915933:1088114..1088236Clytia hemisphaericaexon
TCONS_00001211-exon-sc0000007-1510915933:1086988..1087828TCONS_00001211-exon-sc0000007-1510915933:1086988..1087828Clytia hemisphaericaexon
TCONS_00001211-exon-sc0000007-1491911889:1088407..1088476TCONS_00001211-exon-sc0000007-1491911889:1088407..1088476Clytia hemisphaericaexon
TCONS_00001211-exon-sc0000007-1491911889:1088114..1088236TCONS_00001211-exon-sc0000007-1491911889:1088114..1088236Clytia hemisphaericaexon
TCONS_00001211-exon-sc0000007-1491911889:1086988..1087828TCONS_00001211-exon-sc0000007-1491911889:1086988..1087828Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1086988..1088476 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top