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TCONS_00001209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001209
Unique NameTCONS_00001209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1141

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001209 ID=TCONS_00001209|Name=TCONS_00001209|organism=Clytia hemisphaerica|type=transcript|length=1141bp
gcaaaaaaaatttctaaaaattacaatttttattaaaaaaatcaatgggt
aaatgaataaacaaaatgaaaatggtTAATGGATTGAAATGAGCAATTGA
CAGAACAAATTCCATTGCTGAGCTTCTAGACCCATAATTTCAACGAAAAA
GGTCCTTTGTTGTTGTCTTGGGGTAGACTAGAGTACGAAAAATACGACGG
CCGAAAATTATGTCGTAAGAGATTAGGGTCAGGTATTCAATTTGAGCTTG
TTTCGTATGCCGTAAAATTAGTAATTCATTTCTCGTGTGAGATTTATATC
ATTTGAAGTCTCTTTCAATTTTACACCCATTCTAACACGGTGCTCATTAA
GGAATTCCAGCAATCAAAATGTCTGATGCGGAAGGAGATGATGTGCCCAC
AGCTCCTGCTCCAGGAGGTCCCATGGACATTAACACTGCCCTtcaagaaa
tcttgaaaatggcTATGGTTCATGATGGACTTGCTCGCGGTCTTCGTGAA
GCTGTAAAAGCCCTTGATAAACGAACTGCCTTACTTTGCATCCTGGCAAA
CAACTGTGATGAACAGATGTATGTCAAACTTATTGAAGCCTTGTGTGCTG
AGCATAGCATTAATTTAATTAAGGTTGATGACAATAAGAAACTTGGTGAA
TGGGCCGGTTTATGCAAAATTGACAAAGAAGGCAATGCCAGAAAAGTTGT
TGGATGCAGCTGTGTTGTTGTAAAGGACTGGGGTAAAGAATCACAAGCTC
ACGATGTGCTCATGGAATACTTCAAGGCTCAGCAATCATCTTAGACAAAA
TGTACCAtctttaaaaagacaaaaaaaactgaataacaTTGACACGCTTT
GTTTTCATTCATATTGCCTTCTTTCTCCAGTACACTGTTCTACAGGGGGG
GCatgcagttactacaagacagtgtGACatttactaccgtggtggtactg
tattcagcagttatgaaaacagttactacagtgtagtaactgctgtctgg
gggtggtgccaaacactaaaactgGCACTTTTGGTGTAAttagtgcttat
attttaattctttttaaagaactttcaaaaattctttgttaaaaaaatat
ttttgttataaatagacgaaaaaaaatttgaaatttttctt
Run BLAST on NCBI

transcript from alignment at sc0000007:1052163..1054904-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001209 ID=TCONS_00001209|Name=TCONS_00001209|organism=Clytia hemisphaerica|type=transcript|length=2742bp|location=Sequence derived from alignment at sc0000007:1052163..1054904- (Clytia hemisphaerica)
GCAAAAAAAATTTCTAAAAATTACAATTTTTATTAAAAAAATCAATGGGT AAATGAATAAACAAAATGAAAATGGTTAATGGATTGAAATGAGCAATTGA CAGAACAAATTCCATTGCTGAGCTTCTAGACCCATAATTTCAACGAAAAA GGTCCTTTGTTGTTGTCTTGGGGTAGACTAGAGTACGAAAAATACGACGG CCGAAAATTATGTCGTAAGAGATTAGGGTCAGGTATTCAATTTGAGCTTG TTTCGTATGCCGTAAAATTAGTAATTCATTTCTCGTGTGAGATTTATATC ATTTGAAGTCTCTTTCAATTTTACACCCATTCTAACACGGTGCTCATTGT AAGTAATTTTATGAATCAATCTGTTAATATCTCCTAGCTTTCTTACTCTT CTCGGCTACATATTTCTAATGTTCAACGTGACTCGTGTTTAACCCAGACN GCTTTCTTACTCTTCTCGGCTACATATTTCTAATGTTCAACGTGACTCCT GTTTAACCCAGACCACTTATTCATTTTTATTATCTCTGATCTTTCAGAAG GAATTCCAGCAATCAAAATGTCTGATGCGGAAGGGTGAGTTTCTTTATTT AATTCTGTTGTTGTCACTTTGTTACCAATACCAAGCTAGTCTCGATCGAA CCGATATCTTAAAGTTACTTCTATTTATTTGAAAACTAAAAAATTTAATT AACCTGAGTTTGTGCTTACACACTACAGTGTTGACCATATACATATTTAT TTGTCCTTATGTCTTTGTTTGAGGATTACAAATTTTCCATTACAGAGATG ATGTGCCCACAGCTCCTGCTCCAGGAGGTCCCATGGACATTAACACTGCC CTTCAAGAAATCTTGAAAATGGCTATGGTTCATGATGGACTTGCTCGCGG TCTTCGTGAAGCTGTAAAAGCCCTTGATAAACGAACTGCCTTACTTTGCA TCCTGGCAAACAACTGTGATGAACAGATGTATGTCAAACTTATTGAAGCC TTGTGTGCTGAGCATAGCATTAATTTAATTAAGGTGAGTATCAATGGAAA CATGTCCATAAATGTTGTAAAATACTTATTGGTCTCTTTCAGAAAAAGGG CCATTCCAGAATTTGTCAGTAACAGGGGCGGGCAACACAGGATTTCTGAG GGTAAAAGTTTTCACCAAAATTTAAAATTTCCAAGGCAAGAGAAGAAAAT ATATGAATTTTCGATGCATTTTGCAAAAGTACATGGATTTTCATCAGAAT TTCCAACCACCCCTGGGAAAGAAAAATTATTCAGAGGCTAGAAGAAAATT TAAAATGCACGTCATCCGACGGGAGTAACAAAAATTTTCTGGAATGGCCC AAATCGATTATAGGGGTGGACTGAATTCCCATGGTTTACCACCCTTTAGA GCTATTTTTTTTCAATTGACTTGGTACCATGAGATTGGGTAACTTTCATC AGTGGAGGCTAAAATGCAAAGCCCTCAAATGAATGACCTGGCTGGTCATC AAAATACGACTATGCAGCTCTACTCTACCATTTATGTTTTGATTTAACTT TGTATTTTAATGACCAGCCAGGTCATCATTCAGGGCTATGCATGTTAGCC TCCACTGATGCAAGTTACCCGATCTCATGGTACACCCTTTTCTAAAAAAC AGATGGGATAAATTATTATATTAGTTGATTATTACTGAATAGGATTATTA TAGTTAATGAGATGTATATTTTGGGCTTGACACAACTCTTGGTATGTATT TACAGTATTTTCCCTGTGCTACACACTTGTGATGAGTTAGCGTAGGCTGA TACCTTGATGACTATTGCCTACCATCACCCATAACCTGAAGTGTGTTTTG GTCATCTTAGAATGACGTCAAATTTCCCATGTTTTGTAAAATTATCTTAA GGGATACCAAAGTTGCGGGAGTTGAAGGCCTTTTATAAACCTGTATGCAG AGAAACAAAGCCTCACTGTACTAGAATCACCGCCTGTGATGTTGACCTTA GTTATCTGGAATTATGAATCTGCTTTCGTGAAATAGGTTGATGACAATAA GAAACTTGGTGAATGGGCCGGTTTATGCAAAATTGACAAAGAAGGCAATG CCAGAAAAGTTGTTGGATGCAGCTGTGTTGTTGTAAAGGTAAAATATTTG TAATTAGTTGATCAAATTCAGATATGTAATTTGAGAGAATGATGAGTTAG CTCTTCTGATTTAAACATGGTGACTATAGCCTACCATCACCCATAAACTG ACTCTCTGTTTGATGTTAACTTTAAGGAATTATTCAAAACTCTCCAGCTA AATCATTTCTTTTACCTTTAATTCAGGACTGGGGTAAAGAATCACAAGCT CACGATGTGCTCATGGAATACTTCAAGGCTCAGCAATCATCTTAGACAAA ATGTACCATCTTTAAAAAGACAAAAAAAACTGAATAACATTGACACGCTT TGTTTTCATTCATATTGCCTTCTTTCTCCAGTACACTGTTCTACAGGGGG GGCATGCAGTTACTACAAGACAGTGTGACATTTACTACCGTGGTGGTACT GTATTCAGCAGTTATGAAAACAGTTACTACAGTGTAGTAACTGCTGTCTG GGGGTGGTGCCAAACACTAAAACTGGCACTTTTGGTGTAATTAGTGCTTA TATTTTAATTCTTTTTAAAGAACTTTCAAAAATTCTTTGTTAAAAAAATA TTTTTGTTATAAATAGACGAAAAAAAATTTGAAATTTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000657XLOC_000657Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001209-exon-sc0000007-1575043694:1054557..1054904TCONS_00001209-exon-sc0000007-1575043694:1054557..1054904Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1575043694:1054321..1054357TCONS_00001209-exon-sc0000007-1575043694:1054321..1054357Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1575043694:1053872..1054109TCONS_00001209-exon-sc0000007-1575043694:1053872..1054109Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1575043694:1052767..1052868TCONS_00001209-exon-sc0000007-1575043694:1052767..1052868Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1575043694:1052163..1052578TCONS_00001209-exon-sc0000007-1575043694:1052163..1052578Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1510915933:1054557..1054904TCONS_00001209-exon-sc0000007-1510915933:1054557..1054904Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1510915933:1054321..1054357TCONS_00001209-exon-sc0000007-1510915933:1054321..1054357Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1510915933:1053872..1054109TCONS_00001209-exon-sc0000007-1510915933:1053872..1054109Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1510915933:1052767..1052868TCONS_00001209-exon-sc0000007-1510915933:1052767..1052868Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1510915933:1052163..1052578TCONS_00001209-exon-sc0000007-1510915933:1052163..1052578Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1491911889:1054557..1054904TCONS_00001209-exon-sc0000007-1491911889:1054557..1054904Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1491911889:1054321..1054357TCONS_00001209-exon-sc0000007-1491911889:1054321..1054357Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1491911889:1053872..1054109TCONS_00001209-exon-sc0000007-1491911889:1053872..1054109Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1491911889:1052767..1052868TCONS_00001209-exon-sc0000007-1491911889:1052767..1052868Clytia hemisphaericaexon
TCONS_00001209-exon-sc0000007-1491911889:1052163..1052578TCONS_00001209-exon-sc0000007-1491911889:1052163..1052578Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1052163..1054904 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.44837 4.5648 3.06778 4.36664 0 0 0 0.296539 1.0379 2.56989 2.24648 2.62533 0.163855 0.850826 0.279798 0 1.29466 0.947846 0 0 0.476415 1.0457 0.84746 1.79775 0 0.235975 0 0.360538 1.09382 0.835822
Blast
BLAST of TCONS_00001209 vs. Swiss-Prot (Human)
Match: RS12 (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 5.283e-66
Identity = 99/126 (78.57%), Postives = 112/126 (88.89%), Query Frame = 3
Query:  408 APGGPMDINTALQEILKMAMVHDGLARGLREAVKALDKRTALLCILANNCDEQMYVKLIEALCAEHSINLIKVDDNKKLGEWAGLCKIDKEGNARKVVGCSCVVVKDWGKESQAHDVLMEYFKAQQ 785
            A GG MD+NTALQE+LK A++HDGLARG+REA KALDKR A LC+LA+NCDE MYVKL+EALCAEH INLIKVDDNKKLGEW GLCKID+EG  RKVVGCSCVVVKD+GKESQA DV+ EYFK ++
Sbjct:    7 AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK 132          
The following BLAST results are available for this feature:
BLAST of TCONS_00001209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS125.283e-6678.5740S ribosomal protein S12 OS=Homo sapiens GN=RPS12... [more]
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