TCONS_00001206 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001206
Unique Name	TCONS_00001206
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	698

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000007:1015319..1019799-

transcript sequence

>TCONS_00001206 ID=TCONS_00001206|Name=TCONS_00001206|organism=Clytia hemisphaerica|type=transcript|length=698bp
tagaaaatgagaaaactgataaaaaattaatcaataagtacaaagaaaag
aaatgaaatatgAATGGTATAAAGAAGATGTCTTTCTTAGCCAATGGAGG
AGTGACGAAAATGAGAATGGACGAGACCCTCTGTTTGAAAGATGTAGAAA
CCTTGGATCCAACAAGCGCTGTGGACGAAATCACGTGACAGAGAGGAGTC
CCCAGGAACGATACAAGAGACTTTATCACTGAAGAAATCCACGCTCATGA
TCAGTGATGAGATCAAGAAGATTTTGGCCATGAAGATTCTGCTGAACTGA
TCAGTGACGTCATCATGACGTGGTTTCATCTTGATGGATAAGATATCCTT
TATATTGCCTGTGATGATGGTCATCTTGGTTCGAGCAACAAAACTTGTCA
CCGGCACTCTTGAAAGTTGTATGACCTGTATGGGACGATTGAACAAAGCA
ATGTCGCTCTCCTTCTTGCGTCTCTTCCCTGTGACGGTCGACCAATCAAT
AAGGGCGAAAAGATGAGAGAAGGAGTGACCAAGATGGTGCAAAACGTGTT
GATGTTTGATGAATCGCCTTTTGATGGGATTTGGATCAACAATCTTTTGA
TTGGCTAATTGTCTTAAAGAGGTATGTTACTCAGTAAGCCGATACTTTGT
TATAAAGACTTGTCTCTTTTCACTAATTCAGTCATAAGAGCTTAAGCG

Run BLAST on NCBI

transcript from alignment at sc0000007:1015319..1019799-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001206 ID=TCONS_00001206|Name=TCONS_00001206|organism=Clytia hemisphaerica|type=transcript|length=4481bp|location=Sequence derived from alignment at sc0000007:1015319..1019799- (Clytia hemisphaerica)
TAGAAAATGAGAAAACTGATAAAAAATTAATCAATAAGTACAAAGAAAAG
AAATGAAATATGAATGGTATAAAGAAGATGTCTTTCTTAGCCAATGGAGG
AGTGACGAAAATGAGAATGGACGAGACCCTCTGTTTGAAAGGTATGTACA
TTATTCGTGTGCAATTTGATTCTGTTTGTGGTTTGAAAGTCATGAAAATT
ATCGGAGTCGATTCGAACAGTTATTGATACATTAGTTGCCTTGAAATTTG
ACTCATATTTGCCAAGATATTAATAATAAAAAACAGAGCTTGACTGTTTC
TAATTGGATTAGAGTGAATGGTCGAAGTGAGTAATTCTCACTAACCATGC
CAAACATTCACTTCTCAATTCCTCATGTCCAAGCACGCATGCGTATCGTA
TGTTAACATTTATTTTGTCAAGACTACAGCCAGGGATTCAAAAATTTCCA
GTTTCTATAGTTTATCAAAGGTTTCGTCACGAAAACAAGTAAGCATGTCC
TTTCTAAGTTTCATAAAGTGCTTGAGGCAATTTGAGTTATTACGTAGATA
ATCGTTTCGGACACGTTAAGCATTAGAGATAAGATCTTAGAGATGATTTG
TAAGATAATATATTGGATTAATAAAAATTGAGCTCCAACAAATCATGTAA
AAGAAGAAACAACTAAAGTCTATTCACGATAAGTGTGCACTCTTTTTTCA
TTTACCTATAACTTTTGAAGGAATNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAAAATTTTC
TAACAATATGTCTGGTTTCATCAAGATGATAAAATATCAAAATCATCTGT
TTTAAAGTACCCGACACAATGGGCTTATTGTTTTGAATATTACACCAGAG
TTTCATTGAAGCAAGAGCAATCACCACAAATGTCTACAGTTTTCGGAACT
AAAAATCTCAAGACTTAGTGTTTCTCAGCAATAGAGAGGTCTGTTTACCG
TATGAAGGTCTTTCAAAGCTTTGATGTTGGCTCCTTTGTCTCGTTTCATG
TACCTCAAAATTGTGTGCATATCTCTGCTCCGCCCTCGCTTGAAGAAGCC
TCACTACCTCTCCAAACATGGCCAAATTTTTCACTCGTATGAACTGTAAG
TACTCGATTTCACGGATAGTGATATTTCTACGCACCCTCTTGACGATATT
TCGTGTATTCCGTGAGACGTTTCGTGATTCTCTACACGAAAGCATGATGT
AAGAGAGTGAAAACATATTGATTAGGACGCCAATGTTTGAAATGACAATA
CTGATGATTAACAGGAACCAAAGAACCACCAACACGTATTGGTACAAAAT
ATGAGGGCTTATCTCGCAAATGAACTTGTTGTAATTCGTGAATGAGTGTC
TAACGTCCTTCACACCTTCTGTGATATCACAGAACCCCATCGCTGGTAAT
AACATATTCCCTGGTTTTGGGTGAGCGCGCGTACGTGTGTAAGCGAACGC
CAACGAATTGTTCAATTTCGACCATTTGAGCCATTCAAGACCGTATGATT
TGAAGTTACCGTTTAGAAGGTCATCTGTGAAAACGAAGCTCATGACATTG
ACCAGAACGTAGAATATTTTCACGCAAACATTCAATCCTACACGCATGCG
TAGTTTTCCTTTCCCGCCGTTCATTGAGTAGTCGAAGTAATTTTGAACAA
GTTTTTCGGCAGTAGTATCACTTGGGGCTTTCAGGTTGTCTCGCAAGCTG
ATGATGTCTGCGTTGATGATGCGGAATAAGATGTAAGGCATGTAAAACAT
GATAGCGATGCTTGCCACGTAAAACGGAAAGTACTGGAATTGAATGTAAA
ACGTCTTGGTCATTTCTTTACAGTCCTCGTCTAATAAATGCGACGCTTTG
TTCAAACGTCGACACAATTTCCCATCCGGGTAAATACCATCCAGCTCAAC
GTCTTTCGGGATTCCAAAATAACCCGATTCTGAAAACCGATATCTCATTT
CTTCATAGATGTAGAAACCTTGGATCCAACAAGCGCTGTGGACGAAATCA
CGTGACAGAGAGGAGTCCCCAGGAACGATACAAGAGACTTTATCACTGAA
GAAATCCACGCTCATGATCAGTGATGAGATCAAGAAGATTTTGGCCATGA
AGATTCTGCTGAACTGATCAGTGACGTCATCATGACGTGGTTTCATCTTG
ATGGATAAGATATCCTTTATATTGCCTGTGATGATGGTCATCTTGGTTCG
AGCAACAAAACTTGTCACCGGCACTCTTGGTAAATAAAATCCCTTTAATC
CGCAAAACCTTTCTGATAGCGCTGGACACCAAAATAAAACAATCCTCCTT
AATTGACTAAGTTTGATCTTAACTTGGCGCTTCAACTTTGTGATCCTTGG
TATTTGAAAGCCTTGTGAAATGCCTTCCTTTTATATTTCTTTCAGAAAGT
TGTATGACCTGTATGGGACGATTGAACAAAGCAATGTCGCTCTCCTTCTT
GCGTCTCTTCCCTGTGACGGTCGACCAATCAATAAGGGCGAAAAGATGAG
AGAAGGAGTGACCAAGATGGTGCAAAACGTGTTGATGTTTGATGAATCGC
CTTTTGATGGGATTTGGATCAACAATCTTTTGATTGGCTAATTGTCTTAA
AGAGGTATGTTACTCAGTAAGCCGATACTTTGTTATAAAGACTTGTCTCT
TTTCACTAATTCAGTCATAAGAGCTTAAGCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000655	XLOC_000655	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001206-exon-sc0000007-1575043694:1019659..1019799	TCONS_00001206-exon-sc0000007-1575043694:1019659..1019799	Clytia hemisphaerica	exon
TCONS_00001206-exon-sc0000007-1575043694:1015771..1016041	TCONS_00001206-exon-sc0000007-1575043694:1015771..1016041	Clytia hemisphaerica	exon
TCONS_00001206-exon-sc0000007-1575043694:1015319..1015604	TCONS_00001206-exon-sc0000007-1575043694:1015319..1015604	Clytia hemisphaerica	exon
TCONS_00001206-exon-sc0000007-1510915933:1019659..1019799	TCONS_00001206-exon-sc0000007-1510915933:1019659..1019799	Clytia hemisphaerica	exon
TCONS_00001206-exon-sc0000007-1510915933:1015771..1016041	TCONS_00001206-exon-sc0000007-1510915933:1015771..1016041	Clytia hemisphaerica	exon
TCONS_00001206-exon-sc0000007-1510915933:1015319..1015604	TCONS_00001206-exon-sc0000007-1510915933:1015319..1015604	Clytia hemisphaerica	exon
TCONS_00001206-exon-sc0000007-1491911889:1019659..1019799	TCONS_00001206-exon-sc0000007-1491911889:1019659..1019799	Clytia hemisphaerica	exon
TCONS_00001206-exon-sc0000007-1491911889:1015771..1016041	TCONS_00001206-exon-sc0000007-1491911889:1015771..1016041	Clytia hemisphaerica	exon
TCONS_00001206-exon-sc0000007-1491911889:1015319..1015604	TCONS_00001206-exon-sc0000007-1491911889:1015319..1015604	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000007	supercontig	sc0000007:1015319..1019799 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.952018	1.09443	0.875979	0.572329	1.55302	0.927773	0.77518	0.960568	0.427965	0.681562	1.6171	0.906118	0.647714	1.37863	0.899375	0.659436	1.7774	1.5973	0.863304	0.458722	1.75966	1.27325	0.804653	0.751496	1.78158	0.858459	0.256662	0.37559	0.353754	1.20939

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00001206 vs. Swiss-Prot (Human)

BLAST of TCONS_00001206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00001206 (transcript) - C. hemisphaerica