TCONS_00001203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001203
Unique NameTCONS_00001203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length183

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001203 ID=TCONS_00001203|Name=TCONS_00001203|organism=Clytia hemisphaerica|type=transcript|length=183bp
CACCCAAAAGAAGCAGTGGCAGCAGTTCATTCTCAACAAAGTCAAAGTGC
AGCAATGAACTACATGTTGCCAGAAACAGAAGCTAGTATCCATCCTTTAT
CATTGACCACTGCTGACGTGAAGAAACCAGCCCTTTATGACAGTGTTCTT
GTCAAGAAGAATCTCATCAAAGAGAAACCAGGT
Run BLAST on NCBI

transcript from alignment at sc0000007:999784..1001949-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001203 ID=TCONS_00001203|Name=TCONS_00001203|organism=Clytia hemisphaerica|type=transcript|length=2166bp|location=Sequence derived from alignment at sc0000007:999784..1001949- (Clytia hemisphaerica)
CACCCAAAAGAAGCAGTGGCAGCAGTTCATTCTCAACAAAGTAAGTTTTT
GTTGATTTTCGATTCACTGAATGTTTTAAATAAATCTTGTCTTCGACAAA
ACATAAATTCATATTAATGTTACCAAACCCCTTTTCGTTACAGACCCCCT
TCTCAATGAAAAAATTGACCTAAAAACATCAAGGCACCCTGAAAACTCAT
TCAAACTGGGAGAGATACTCAAGTTTTAAATGTCCAAATATTGAACAGTA
TAAAATTCAAAATCCCAACCTAAACGCAAGATCAATCAATCCGCATTGGT
ACTTAGCGTCGCCATTTTATTTCCACAGGCTAAACGCTTCTCACCGGATA
TCTGAGACAGGGGTGTCACCATTTGACGTTGTTTGTGTGTAATTTGTCAG
TTCACGCTCCCTTAGTTCATAATTATCTCAATTGTTGTCGTTGTTTGGTG
TATACATTGTCATGTTCGTCCCCGATCATTTGAATCTGTGTTACTTGCGA
TGTTTGTTTCTGTTTTGTTTATGTCCGTTGTATGTTTGTAAACTGTCCAT
ATGGTTGTATGCAACAAATTTCATGAGCGTTGCTTAAAAAGAGTGGCTTA
TCGCTTGGCTATATAATGTGAAGTCCTCGATGTCCAACACTAGATGTTTA
GTTATTGTTTCTTGTTTAATGTTGTTGTACATGTTGTTCGTACAGTAAGC
GTTCGTTCATACCTCCACTCCCATGCATGCATGAACACGCTTCATTCACT
ACATCTTTTTTATTGACAGTTCAACCTACGATACCGAAACGAAACAATTT
TTATGACGAAATACATGACGTAATACATCGAATGACAAACAAAAAACCTT
TAGAAGAGAGTACATCCGATGAGATCTTCCCCATTTTGAAACCCTCCAAA
ATGTTTGGCTTCTCTCCTTCACACGAGGAAAACAATGTCAAGAAAGACAA
CATTCCTAAATCCATTTTCCCTCCCACTCTCTCCTCACAAATGCTCCATA
AACTACCTCTACCGTTCACTGAGAAAAGCTTTTCTCAGCCAGCAGAAAGT
TCTCCAAAGTCACAACTCTCTTACCAACCTTTGCAGCCCACTAACCAAAC
AAATCTCACAAAACCACCAAACTCATCCCCATCAAGCAAAACAGATTCAT
CTGCTACTTTAAGCAACCAATCCAATTCCTCCTTAATGTCAAATAACCAA
TCAGAATCACTCATGAAGACTGATCTTTTTGGTGACGCAAACTCTAACAC
CAATCAAAATGATTCGAATAGCTCCATATTGAGCTCAGTCGGTCAATTTT
TAGACAATGTTGGAAACACTTCATCAGTGAATAACCAAAATAACCCCTCT
CCCTTTAACCCTACTCCTTCCTCTCTCCAAGCCGCAAACTCTTCCTTAAT
TAACACTCTCTCCCCTGAAAAACAAATAAACCAATCAAACATTGCATACA
TCTCCAACCATCCAATCACAACCCAATTCAGCAACGAATCAAATTTCGCC
AGCAATTCATTAACACACTCAGACTTAACAGGTCCCAAAATGAACCAATC
AAATAGCGATCCGTTAGTTGCTTCATGGAGGCAATTCTTCCCTTCCTTAT
TCCCATCCGGTAGAACGACATCCCAACAGTTTGACATCAAGAGTAACATA
ACGACAGCCAAAAATGAAACTCCTGAAGTGAGATCTGGTGAGTATGATGT
AGTCGTTACACCCACTTACAGATTGGACGTCATGCATGTGACGAGTTTAC
TCAAGGAGTTTGGTTCACTTATAATCATGAATAGATGTTCGAGACTGGTC
GGTTTCCAATATGCCGTGGAATGTCTTTTCTGTTATTGATCTCATGGCTC
TCATAGTATAAGTTGCTATAAAGAAGGGAGAATTTACCAGAGGATGCTAA
CAGCTGGTATGTGCTCTGGGACCTTCTTCCTTTTTTCAATACTTGGCCCC
AGTACTTCCTTATGAGGGGATTTCCTTTTTTCGGACTTTTTATTTCTAAC
TTTCTAATTCTGTACAAAAACAGGTCAAAGTGCAGCAATGAACTACATGT
TGCCAGAAACAGAAGCTAGTATCCATCCTTTATCATTGACCACTGCTGAC
GTGAAGAAACCAGCCCTTTATGACAGTGTTCTTGTCAAGAAGAATCTCAT
CAAAGAGAAACCAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000653XLOC_000653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001203-exon-sc0000007-1575043694:1001910..1001949TCONS_00001203-exon-sc0000007-1575043694:1001910..1001949Clytia hemisphaericaexon
TCONS_00001203-exon-sc0000007-1575043694:999784..999926TCONS_00001203-exon-sc0000007-1575043694:999784..999926Clytia hemisphaericaexon
TCONS_00001203-exon-sc0000007-1510915933:1001910..1001949TCONS_00001203-exon-sc0000007-1510915933:1001910..1001949Clytia hemisphaericaexon
TCONS_00001203-exon-sc0000007-1510915933:999784..999926TCONS_00001203-exon-sc0000007-1510915933:999784..999926Clytia hemisphaericaexon
TCONS_00001203-exon-sc0000007-1491911889:1001910..1001949TCONS_00001203-exon-sc0000007-1491911889:1001910..1001949Clytia hemisphaericaexon
TCONS_00001203-exon-sc0000007-1491911889:999784..999926TCONS_00001203-exon-sc0000007-1491911889:999784..999926Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:999784..1001949 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	6.74881	35.2719	0	0	0	1.7513	1.73493	8.37013	1.47565	15.8569	12.7709	0.611393	0	0	0	0	0	0	27.994	26.5173	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top