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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001198 ID=TCONS_00001198|Name=TCONS_00001198|organism=Clytia hemisphaerica|type=transcript|length=1454bp TCATGTTTTAATGATCATGCTCTTTCTATCTCATTGCGTTAGGGACCTTT GGACCTCATCTAGATTTTTTAATAGAATCAATTAATATAAAGAAATTCTT ATTATAAAGTGACGACAAAAATAGAAgaatatcaaaaaagaaaatgggTT TTGTCAAGACGTTAGCTTGTTTGTGTTATTTCATGGTACCTGTTCTCGGT ATTCTACTTCCAATACCGTTATGTGATATAAGACGAAACTTAACGCCGGA GCAAGTGGAATTATGCAAACAGTTCAAAGAGAAACATCTGGATTTGTTGC TGGACGCCAAATTCAAATCAGAGTTCGAATGCAAGAAACAGTTTGCTGGT CGACGTTGGAATTGCACAATGCCGCCTTCTTCAAATGTGACGCCATTNAA TGCAAGAAACAGTTTGCTGGTCGACGTTGGAATTGCACAATGCCGCCTTC TTCAAACGTGACGCCATTATTGTTACCAAGGTTACCATTAGCAACCAAAG AGACATCATATTTGTACGCTTCGATGTCAGCAGCCATGATGCACACAATC AGTCGTGGTTGTATGGCAGGTACTCTGAAGAACTACTGCGCATGCTCTGA AGAAGGAAGGCCACGTGATCTACCCAAGAATCAGATCTGGGGTGGGTGTG GTGATAATTTACCATACGGATACAAGTTCAGTAAGATGTTCACTGATGCT GGTGAACAACTGACCGAAACTTCGTTGACAGGATTTTCAAGAGTTTTAAT GAACCTTCATAATAATGAAGCTGGGAGATGGGCTGTTTACGAGAAGTCGT TCATCAAATGCAGATGTCATGGAGTTTCCACAAACTGTCCAACAAAGACA TGCTACAGGCAGCTTGGTCGCTTCCACACTGTAGCCAAACATCTGGAAAC ATTACATCAAGATGCGGTTCACGTCAAACTACAAAAGGACGTCCCTGATG CAGAGGAGGAGGGAAATGTAGAGATGAAGCTTGTCGAAACCAGTCCAGGA TTTACCAAGAAGTCTACCAAAGACCTGGTTTATATTAGTGATTCACCAAG TTACTGTGAGCGTAGCATAAGAACAGGTTCGTACGGTGTAGCCGGTAGAC CATGTACAAAAGAAGGAAATATTCATACGGATTGTGAAGCTATGTGTTGT CAGAAAGGACATTATTCGAAACGAGAAATAGTACGGACTAAATGTGGGTG CAAACTGATTTGGTGTTGCGAAGTAAAGTGTAATATAtgtgaaaatgaac aaaataaccACTACTGCAGATAACAGGTTCATCTTGCACTTATctagtca attttttatatgAAGATGTTTTTAACGAAATATAGTTTTATGTTGCCCTG GGTGTTGTTTTATCATTATTGTAGCGCGATTTGTATCATAAAAATATGTG TATATAATAATTATCTATTTATATTGTGAAAAGAATTTATATATGAAAAC TCAA Run BLAST on NCBI protein sequence of TCONS_00001198-protein >TCONS_00001198-protein ID=TCONS_00001198-protein|Name=TCONS_00001198-protein|organism=Clytia hemisphaerica|type=polypeptide|length=336bp
MQTVQRETSGFVAGRQIQIRVRMQETVCWSTLELHNAAFFKCDAIXCKKQ FAGRRWNCTMPPSSNVTPLLLPRLPLATKETSYLYASMSAAMMHTISRGC MAGTLKNYCACSEEGRPRDLPKNQIWGGCGDNLPYGYKFSKMFTDAGEQL TETSLTGFSRVLMNLHNNEAGRWAVYEKSFIKCRCHGVSTNCPTKTCYRQ LGRFHTVAKHLETLHQDAVHVKLQKDVPDAEEEGNVEMKLVETSPGFTKK STKDLVYISDSPSYCERSIRTGSYGVAGRPCTKEGNIHTDCEAMCCQKGH YSKREIVRTKCGCKLIWCCEVKCNICENEQNNHYCR Run BLAST on NCBI transcript from alignment at sc0000007:945389..948687- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001198 ID=TCONS_00001198|Name=TCONS_00001198|organism=Clytia hemisphaerica|type=transcript|length=3299bp|location=Sequence derived from alignment at sc0000007:945389..948687- (Clytia hemisphaerica) TCATGTTTTAATGATCATGCTCTTTCTATCTCATTGCGTTAGGGACCTTT
GGACCTCATCTAGATTTTTTAATAGGTAAGATTTGACATCGTCAAAATCG
CTCGAAATATGGGAGCTTTGGTAGTACGGTTGATATGGTTTTACGGACAA
ACGCAGATGAATGGACAATACAACCTGTTACCAGAATGTGCTTGGTTTCG
CACTTGATTTATGAAAGCCTAATATTAACTTAATTATTTCATTGGATCAA
TAATTGGATTATGTTAATACCTTCATTCTTTCTATCTTTAGAATCAATTA
ATATAAAGAAATTCTTATTATAAAGTGACGACAAAAATAGAAGAATATCA
AAAAAGAAAATGGGTTTTGTCAAGACGTTAGCTTGTTTGTGGTAAGTTGG
ATATTATAAGATGTTTCAATGTTTCATTTACATTTTATGAGTTACTCAAT
GACTAGCGAAAAAGAAGGACTTCACTTAGAGAGCTGAAATAGAATCAGTT
AGCGTGTCTAAACAATCTCGGTTTAGCAGTCACGTTTTTCGTATCCCACA
CGAAAGATTAAAATACCGAAAAAAGATATAATCAGACTTTTAATTAGTAC
CTTAAGTGCCTAAAAATAATTCACTAGATCAACCCACATCTAAAACCGGC
TCTGTGGAATCTCAATCCCTACTAAAACCTCCTCGAAACTCAAAGTAAGC
CGACAGATGAAAAAAGACGTTTATCAAATCAAAGGGAAGATACGATAAGA
TTAAAAAAACCACACATAGCTTAATTAATGATTAATCTTAATGACCAATT
AGTAACTGCTATATCTTGATCAGTGACTTCCGATAAAGTTAATCTAATGT
GTATTTAACGTTTCCGATGCTGGCGCTTATTGAGTCCTGCAAGAGACGAA
TAGTGCACGTCAACCGCCACCTAATTATCCCCTAATCATGTTTCCATTGT
TTTCAAATGTTTTTGTAAACCCATACACAATACCTGTTATCAAGCAGTGC
TAAAATTAACCTGCTTTCCATCACAAATGAGACAGATTATTGATGGAAAG
GACTTTGTAAACAAAACTCAAACACAAGAAAATGGGATTCTGTCCGTCCC
CCTTTCTAAAGAAAATTAATCCGGTATATGGCTGTTGAAATGGAATTCCA
CTAATAACTTTTTCTCCAAATGAAAAACATTGATGGTTGAAGGATTAAGT
AGATTTGTGGAAAAATTTAGTAAACAACAAACATTAGTTTCGTCTATCAG
TCGTTGAGAACGATGTTCNGTTGAAGGATTAAGTAGATTTGTGGAAAAAT
TTAGTAAACAACAAACATTAGTTTCGTCTATCAGTCGTTGAGAAAGATGT
TGGGAAATAATATTGTCACACAACCAGAGGTGGTTTATGCCAACATTCCT
CCTTCGTTTTATAGTTATTTCATGGTACCTGTTCTCGGTATTCTACTTCC
AATACCGTTATGTGATATAAGACGAAACTTAACGCCGGAGCAAGTGGAAT
TATGCAAACAGTTCAAAGAGAAACATCTGGATTTGTTGCTGGACGCCAAA
TTCAAATCAGAGTTCGAATGCAAGAAACAGTTTGCTGGTCGACGTTGGAA
TTGCACAATGCCGCCTTCTTCAAATGTGACGCCATTNAATGCAAGAAACA
GTTTGCTGGTCGACGTTGGAATTGCACAATGCCGCCTTCTTCAAACGTGA
CGCCATTATTGTTACCAAGGTTACCATTAGGTAAGCGCTTAACTTTTTAA
TACAACTTTGTCGATGTTTATGAAAAAAGCATATTCAAGTATTTTGCGGC
AACCTCTGTGAATCAAGCAAAAAAAGAAAGGGCCAAACTCTGATACTCCA
AAGTAAACGCATCAAACTTAATAACATTGCAATACATTGGAAAACGTTGT
GGGTTCTAACCAAATCATCTCACCTTTTACTCATAGCAACCAAAGAGACA
TCATATTTGTACGCTTCGATGTCAGCAGCCATGATGCACACAATCAGTCG
TGGTTGTATGGCAGGTACTCTGAAGAACTACTGCGCATGCTCTGAAGAAG
GAAGGCCACGTGATCTACCCAAGAATCAGATCTGGGGTGGGTGTGGTGAT
AATTTACCATACGGATACAAGTTCAGTAAGATGTTCACTGATGCTGGTGA
ACAACTGACCGAAACTTCGTTGACAGGATTTTCAAGAGTTTTAATGAACC
TTCATAATAATGAAGCTGGGAGATGGGTAAGTTTATTTGTGTTTTATCAA
TTCCTTTTACATTGCACAAAAACAAAATGTATGCAAACTTTGAGATCAAC
AAAATCCGGTAACAAAAAATCAGAGATGGGAGAAGAATCTCTCGAAATGT
TAGCTAAGCGTAAATCTCGTGATCCAAGCCACGATAAACTTTCAATATAT
CATAGAGTCGATAAACTCAAATTTTTTCAGGAAATCAGAGAATTCAAGAG
TCTTCCCACATAGAAACACGCCACAGTATCTAAAGGATGTTTATTCTGGA
AATCTAGAAATTGAAATTATGTAAAGATGCCAACAAATTATTGAATACTA
AGTCTCTTGTATTTCCTTTGAAATATATAAATTTCATAACGGCTTAACAT
TTTCAATGTTCCTGTTTTTCTTAAAGGCTGTTTACGAGAAGTCGTTCATC
AAATGCAGATGTCATGGAGTTTCCACAAACTGTCCAACAAAGACATGCTA
CAGGCAGCTTGGTCGCTTCCACACTGTAGCCAAACATCTGGAAACATTAC
ATCAAGATGCGGTTCACGTCAAACTACAAAAGGACGTCCCTGATGCAGAG
GAGGAGGGAAATGTAGAGATGAAGCTTGTCGAAACCAGTCCAGGATTTAC
CAAGAAGTCTACCAAAGACCTGGTTTATATTAGTGATTCACCAAGTTACT
GTGAGCGTAGCATAAGAACAGGTTCGTACGGTGTAGCCGGTAGACCATGT
ACAAAAGAAGGAAATATTCATACGGATTGTGAAGCTATGTGTTGTCAGAA
AGGACATTATTCGAAACGAGAAATAGTACGGACTAAATGTGGGTGCAAAC
TGATTTGGTGTTGCGAAGTAAAGTGTAATATATGTGAAAATGAACAAAAT
AACCACTACTGCAGATAACAGGTTCATCTTGCACTTATCTAGTCAATTTT
TTATATGAAGATGTTTTTAACGAAATATAGTTTTATGTTGCCCTGGGTGT
TGTTTTATCATTATTGTAGCGCGATTTGTATCATAAAAATATGTGTATAT
AATAATTATCTATTTATATTGTGAAAAGAATTTATATATGAAAACTCAA Coding sequence (CDS) from alignment at sc0000007:945389..948687- >TCONS_00001198 ID=TCONS_00001198|Name=TCONS_00001198|organism=Clytia hemisphaerica|type=CDS|length=3033bp|location=Sequence derived from alignment at sc0000007:945389..948687- (Clytia hemisphaerica) GCTGTTTACGAGAAGTCGTTCATCAAATGCAGATGTCATGGAGTTTCCAC AAACTGTCCAACAAAGACATGCTACAGGCAGCTTGGTCGCTTCCACACTG TAGCCAAACATCTGGAAACATTACATCAAGATGCGGTTCACGTCAAACTA CAAAAGGACGTCCCTGATGCAGAGGAGGAGGGAAATGTAGAGATGAAGCT TGTCGAAACCAGTCCAGGATTTACCAAGAAGTCTACCAAAGACCTGGTTT ATATTAGTGATTCACCAAGTTACTGTGAGCGTAGCATAAGAACAGGTTCG TACGGTGTAGCCGGTAGACCATGTACAAAAGAAGGAAATATTCATACGGA TTGTGAAGCTATGTGTTGTCAGAAAGGACATTATTCGAAACGAGAAATAG TACGGACTAAATGTGGGTGCAAACTGATTTGGTGTTGCGAAGTAAAGTGT AATATATGTGAAAATGAACAAAATAACCACTACTGCAGATAACAACCAAA GAGACATCATATTTGTACGCTTCGATGTCAGCAGCCATGATGCACACAAT CAGTCGTGGTTGTATGGCAGGTACTCTGAAGAACTACTGCGCATGCTCTG AAGAAGGAAGGCCACGTGATCTACCCAAGAATCAGATCTGGGGTGGGTGT GGTGATAATTTACCATACGGATACAAGTTCAGTAAGATGTTCACTGATGC TGGTGAACAACTGACCGAAACTTCGTTGACAGGATTTTCAAGAGTTTTAA TGAACCTTCATAATAATGAAGCTGGGAGATGGATGCAAACAGTTCAAAGA GAAACATCTGGATTTGTTGCTGGACGCCAAATTCAAATCAGAGTTCGAAT GCAAGAAACAGTTTGCTGGTCGACGTTGGAATTGCACAATGCCGCCTTCT TCAAATGTGACGCCATTNAATGCAAGAAACAGTTTGCTGGTCGACGTTGG AATTGCACAATGCCGCCTTCTTCAAACGTGACGCCATTATTGTTACCAAG GTTACCATTAGGCTGTTTACGAGAAGTCGTTCATCAAATGCAGATGTCAT GGAGTTTCCACAAACTGTCCAACAAAGACATGCTACAGGCAGCTTGGTCG CTTCCACACTGTAGCCAAACATCTGGAAACATTACATCAAGATGCGGTTC ACGTCAAACTACAAAAGGACGTCCCTGATGCAGAGGAGGAGGGAAATGTA GAGATGAAGCTTGTCGAAACCAGTCCAGGATTTACCAAGAAGTCTACCAA AGACCTGGTTTATATTAGTGATTCACCAAGTTACTGTGAGCGTAGCATAA GAACAGGTTCGTACGGTGTAGCCGGTAGACCATGTACAAAAGAAGGAAAT ATTCATACGGATTGTGAAGCTATGTGTTGTCAGAAAGGACATTATTCGAA ACGAGAAATAGTACGGACTAAATGTGGGTGCAAACTGATTTGGTGTTGCG AAGTAAAGTGTAATATATGTGAAAATGAACAAAATAACCACTACTGCAGA TAACAACCAAAGAGACATCATATTTGTACGCTTCGATGTCAGCAGCCATG ATGCACACAATCAGTCGTGGTTGTATGGCAGGTACTCTGAAGAACTACTG CGCATGCTCTGAAGAAGGAAGGCCACGTGATCTACCCAAGAATCAGATCT GGGGTGGGTGTGGTGATAATTTACCATACGGATACAAGTTCAGTAAGATG TTCACTGATGCTGGTGAACAACTGACCGAAACTTCGTTGACAGGATTTTC AAGAGTTTTAATGAACCTTCATAATAATGAAGCTGGGAGATGGATGCAAA CAGTTCAAAGAGAAACATCTGGATTTGTTGCTGGACGCCAAATTCAAATC AGAGTTCGAATGCAAGAAACAGTTTGCTGGTCGACGTTGGAATTGCACAA TGCCGCCTTCTTCAAATGTGACGCCATTNAATGCAAGAAACAGTTTGCTG GTCGACGTTGGAATTGCACAATGCCGCCTTCTTCAAACGTGACGCCATTA TTGTTACCAAGGTTACCATTAGGCTGTTTACGAGAAGTCGTTCATCAAAT GCAGATGTCATGGAGTTTCCACAAACTGTCCAACAAAGACATGCTACAGG CAGCTTGGTCGCTTCCACACTGTAGCCAAACATCTGGAAACATTACATCA AGATGCGGTTCACGTCAAACTACAAAAGGACGTCCCTGATGCAGAGGAGG AGGGAAATGTAGAGATGAAGCTTGTCGAAACCAGTCCAGGATTTACCAAG AAGTCTACCAAAGACCTGGTTTATATTAGTGATTCACCAAGTTACTGTGA GCGTAGCATAAGAACAGGTTCGTACGGTGTAGCCGGTAGACCATGTACAA AAGAAGGAAATATTCATACGGATTGTGAAGCTATGTGTTGTCAGAAAGGA CATTATTCGAAACGAGAAATAGTACGGACTAAATGTGGGTGCAAACTGAT TTGGTGTTGCGAAGTAAAGTGTAATATATGTGAAAATGAACAAAATAACC ACTACTGCAGATAACAACCAAAGAGACATCATATTTGTACGCTTCGATGT CAGCAGCCATGATGCACACAATCAGTCGTGGTTGTATGGCAGGTACTCTG AAGAACTACTGCGCATGCTCTGAAGAAGGAAGGCCACGTGATCTACCCAA GAATCAGATCTGGGGTGGGTGTGGTGATAATTTACCATACGGATACAAGT TCAGTAAGATGTTCACTGATGCTGGTGAACAACTGACCGAAACTTCGTTG ACAGGATTTTCAAGAGTTTTAATGAACCTTCATAATAATGAAGCTGGGAG ATGGATGCAAACAGTTCAAAGAGAAACATCTGGATTTGTTGCTGGACGCC AAATTCAAATCAGAGTTCGAATGCAAGAAACAGTTTGCTGGTCGACGTTG GAATTGCACAATGCCGCCTTCTTCAAATGTGACGCCATTNAATGCAAGAA ACAGTTTGCTGGTCGACGTTGGAATTGCACAATGCCGCCTTCTTCAAACG TGACGCCATTATTGTTACCAAGGTTACCATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001198-exon-sc0000007-1575043694:948613..948687 | TCONS_00001198-exon-sc0000007-1575043694:948613..948687 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1575043694:948297..948396 | TCONS_00001198-exon-sc0000007-1575043694:948297..948396 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1575043694:946958..947273 | TCONS_00001198-exon-sc0000007-1575043694:946958..947273 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1575043694:946462..946751 | TCONS_00001198-exon-sc0000007-1575043694:946462..946751 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1575043694:945389..946061 | TCONS_00001198-exon-sc0000007-1575043694:945389..946061 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1510915933:948613..948687 | TCONS_00001198-exon-sc0000007-1510915933:948613..948687 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1510915933:948297..948396 | TCONS_00001198-exon-sc0000007-1510915933:948297..948396 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1510915933:946958..947273 | TCONS_00001198-exon-sc0000007-1510915933:946958..947273 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1510915933:946462..946751 | TCONS_00001198-exon-sc0000007-1510915933:946462..946751 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1510915933:945389..946061 | TCONS_00001198-exon-sc0000007-1510915933:945389..946061 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1491911889:948613..948687 | TCONS_00001198-exon-sc0000007-1491911889:948613..948687 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1491911889:948297..948396 | TCONS_00001198-exon-sc0000007-1491911889:948297..948396 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1491911889:946958..947273 | TCONS_00001198-exon-sc0000007-1491911889:946958..947273 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1491911889:946462..946751 | TCONS_00001198-exon-sc0000007-1491911889:946462..946751 | Clytia hemisphaerica | exon |
TCONS_00001198-exon-sc0000007-1491911889:945389..946061 | TCONS_00001198-exon-sc0000007-1491911889:945389..946061 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000007 | supercontig | sc0000007:945389..948687 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR005817 | Wnt |
Vocabulary: Molecular Function
Term | Definition |
GO:0005102 | receptor binding |
Vocabulary: Biological Process
Term | Definition |
GO:0007275 | multicellular organism development |
GO:0016055 | Wnt signaling pathway |
Vocabulary: Cellular Component
Term | Definition |
GO:0005576 | extracellular region |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007275 |
multicellular organism development |
biological_process |
GO:0016055 |
Wnt signaling pathway |
cellular_component |
GO:0005576 |
extracellular region |
molecular_function |
GO:0005102 |
receptor binding |
Blast
BLAST of TCONS_00001198 vs. Swiss-Prot (Human)
Match: WNT5A (Protein Wnt-5a OS=Homo sapiens GN=WNT5A PE=1 SV=2) HSP 1 Score: 219.935 bits (559), Expect = 7.729e-66 Identity = 115/292 (39.38%), Postives = 164/292 (56.16%), Query Frame = 2
Query: 401 CKKQFAGRRWNCTMPPSSNVTXXXXXXXXXATKETSYLYASMSAAMMHTISRGCMAGTLKNYCACSEEGRPRDLPKNQIWGGCGDNLPYGYKFSKMFTDAGEQLTETSLTGF--SRVLMNLHNNEAGRWAVYEKSFIKCRCHGVSTNCPTKTCYRQLGRFHTVAKHLETLHQDAVHVKLQKDVPDAEEEGNVEMKLVETSPGFTKKSTKDLVYISDSPSYCERSIRTGSYGVAGRPCTKEGNIHTDCEAMCCQKGHYSKREIVRTKCGCKLIWCCEVKCNICENEQNNHYCR 1270
C+ QF RRWNC+ +++V + + ++ET++ YA +A +++ +SR C G L C CS RP+DLP++ +WGGCGDN+ YGY+F+K F DA E+ + + +R+LMNLHNNEAGR VY + + C+CHGVS +C KTC+ QL F V L+ + A ++L N KLV+ + F +T+DLVYI SP YC R+ TGS G GR C K CE MCC +G+ + + +C CK WCC VKC C + C+
Sbjct: 104 CQYQFRHRRWNCSTVDNTSV---FGRVMQIGSRETAFTYAVSAAGVVNAMSRACREGELST-CGCSRAARPKDLPRDWLWGGCGDNIDYGYRFAKEFVDARERERIHAKGSYESARILMNLHNNEAGRRTVYNLADVACKCHGVSGSCSLKTCWLQLADFRKVGDALKEKYDSAAAMRL-----------NSRGKLVQVNSRFNSPTTQDLVYIDPSPDYCVRNESTGSLGTQGRLCNKTSEGMDGCELMCCGRGYDQFKTVQTERCHCKFHWCCYVKCKKCTEIVDQFVCK 380
The following BLAST results are available for this feature:
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