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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001195 ID=TCONS_00001195|Name=TCONS_00001195|organism=Clytia hemisphaerica|type=transcript|length=3575bpRun BLAST on NCBI protein sequence of TCONS_00001195-protein >TCONS_00001195-protein ID=TCONS_00001195-protein|Name=TCONS_00001195-protein|organism=Clytia hemisphaerica|type=polypeptide|length=681bp MARYTSTYLPLLIIVLHFSFVKNFCIEFHCTARYKGSYKPTTAPPTGQCIRun BLAST on NCBI transcript from alignment at sc0000007:923551..938744- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001195 ID=TCONS_00001195|Name=TCONS_00001195|organism=Clytia hemisphaerica|type=transcript|length=15194bp|location=Sequence derived from alignment at sc0000007:923551..938744- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:923551..938744- >TCONS_00001195 ID=TCONS_00001195|Name=TCONS_00001195|organism=Clytia hemisphaerica|type=CDS|length=18414bp|location=Sequence derived from alignment at sc0000007:923551..938744- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00001195 vs. Swiss-Prot (Human)
Match: SVEP1 (Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3) HSP 1 Score: 118.627 bits (296), Expect = 2.564e-50 Identity = 110/401 (27.43%), Postives = 166/401 (41.40%), Query Frame = 1
Query: 1177 CPAIKLSLNSIHLDKSCNGVDSSCTSVCRIDCKKGYKLIG-QNHVTCHGSGKWTG--KLGYCKDSEPPTITCPK-LPIPTVNNKPGTNYSIISFPNATATDNSGFPVTITTSHPS--PLKVFVHHPVEVTYTATDAVGNTNKCKRKFIVKDHEAPVVTYCPKKHRIIKTGLFPHRVFWPMPRFTDNVEADNELVFIPSVVNGTKFYQGKHSVDIKARDKSSNTGNCTMTFELQMLKCPVDAPPKHGSATCNIKNNGKVEAFICTAACQKGSWFLEGANIPKVYNLYVCSM-DGAWQGASVFNFDNLVHSPMVPINRGDPMWPDCSVGKSPNGVALDMQIF--SGKCSDQASMEKLKRDFVATLKKDFIWGAAFCSQQQ--QCDVENAVVXSFISLFQEDKE 2346
C ++ + I +C + ++C + C++G+ L G + + C SGKW + CKD E P I CPK + T+ + N +++ TA DNSG V++ HP+ P +F V + YTATD GN C V D E PV+ +C + ++ H W P+F+DN A ELV S G F QG+ V A D S N C + ++ C + P +G C N G CT C +G F EG+ + Y C+ DG W+ WPDC+ + N ++F + +C D M+K F TL K +FCS + C +E + + + D E
Sbjct: 498 CSTFQMPKDVIISPHNCGKQPAKFGTICYVSCRQGFILSGVKEMLRCTTSGKWNVGVQAAVCKDVEAPQINCPKDIEAKTLEQQDSAN---VTWQIPTAKDNSGEKVSVHV-HPAFTPPYLFPIGDVAIVYTATDLSGNQASCIFHIKVIDAEPPVIDWC-RSPPPVQVSEKVHAASWDEPQFSDNSGA--ELVITRSHTQGDLFPQGETIVQYTATDPSGNNRTCDIHIVIKGSPCEIPFTPVNGDFICTPDNTG----VNCTLTCLEGYDFTEGST-----DKYYCAYEDGVWKPTYTTE------------------WPDCAKKRFANHGFKSFEMFYKAARCDDTDLMKKFSEAFETTLGKMV---PSFCSDAEDIDCRLEENLTKKYCLEYNYDYE 861 HSP 2 Score: 100.908 bits (250), Expect = 2.564e-50 Identity = 69/211 (32.70%), Postives = 104/211 (49.29%), Query Frame = 3
Query: 2397 SKKTKRSTNNKDQMV-IKFSISVRKTL---NQGVLDKDN----LKQLNTLTQALELQKTAIVQKVTSTAVKVLKDNSVKVNSQKPSISCKQGSELQSVNGTIKCLQCPSGTFYQSETKKCTVCQPGFFQNREGALSCENCPQGETTKGTLSSDFHRCKAICHPGTYSKNGLAPCTQCPSGTYQPSLESQDCIKCP-NSNGKRQGLTDVKDC 3002
S + KRS D + + F+I+ L L+ +N L+ L T+T L+ A ++L +S + ++K S C+ GS L+ C+ CP GT+Y E C C+ G +Q+ EG L C+ CP G T+ S + CKA C GTYS +GL C CP GTYQP S+ C+ CP N++ ++G ++ C
Sbjct: 900 SSRIKRSAPLSDYKIKLIFNITASVPLPDERNDTLEWENQQRLLQTLETITNKLKRTLNKDPMYSFQLASEILIADSNSLETKKASPFCRPGSVLRGR----MCVNCPLGTYYNLEHFTCESCRIGSYQDEEGQLECKLCPSGMYTEYIHSRNISDCKAQCKQGTYSYSGLETCESCPLGTYQPKFGSRSCLSCPENTSTVKRGAVNISAC 1106 The following BLAST results are available for this feature:
BLAST of TCONS_00001195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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