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TCONS_00001193 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001193
Unique NameTCONS_00001193
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001193 ID=TCONS_00001193|Name=TCONS_00001193|organism=Clytia hemisphaerica|type=transcript|length=962bp
GGGGTCATCAAGTTTTCTCAAACTGCGTATGAGGACTAAATCCCCAAAAG
TGCAAGGGATGTTTGTAAAAGATGCTCGCTTCATATTCTTATTCATTGTC
TTATTCTTGGATGCGATTAAATGTcatctttatcaaaaatacctCATCCC
ATCACAAAGTTATACAAAAGAAGGAGAAGTTTTTCGAACGAAATCACCCA
CCGAATGTCTATTACGTTGTGGgaaaagaaaatgtatgaacACCATTATT
GAAGATGAACATTGTCAATGTACAACGACGGACTGTTTGGCGAATCGAGC
GGCGATTAATGAAACGACGTCGCTGGTAGAATGCTATGAATCTCCACTGT
TGCCGGTGACAGCAGGACCGATTTGTTACAAAGGACGAAACAACCAATAT
GCTTCATTCACTATACCACACAAAGGAAAAGTCAAGGACATTAAACTCCA
ACATGTCTCAGGTGGGATCGAGTGTTCGGAAGACATAGGAAGTTCTGGTG
CAAGTTATTGGGGTTGTCATCATTATGTTTATACTTCAACTGATATCTTG
ACACTCATcacaaacaatcaaaatataCCAGTTTTTCCGCCGATCAGCCA
GGGAGTAATAAGGTTCACAATACCAGGTACACATATTGACTCAGATGAGA
TTGTTTTCACTCCTTCCTCGCCAGTGGCAGTTCAGAAGGGCGAAGAATTT
CGTATTTGGAACACTGAAGATTTATATGATTCTGCTGACGGAGATAACCC
TGGTACCCACTGTGTTCACGTTCTTGTCAAATTTTGCTGATATTTAACCT
GATATCTAACATTCCACATtccaataataaaaataataatttagctaaga
acattgatctatgcttataaatagcgattcttatagataaagattcgttt
ttcaaatctgcttgagccaacTTCTACCTACGATGGTGCCCtactttcaa
gtaaaaaaagag
Run BLAST on NCBI

protein sequence of TCONS_00001193-protein

>TCONS_00001193-protein ID=TCONS_00001193-protein|Name=TCONS_00001193-protein|organism=Clytia hemisphaerica|type=polypeptide|length=262bp
GSSSFLKLRMRTKSPKVQGMFVKDARFIFLFIVLFLDAIKCHLYQKYLIP
SQSYTKEGEVFRTKSPTECLLRCGKRKCMNTIIEDEHCQCTTTDCLANRA
AINETTSLVECYESPLLPVTAGPICYKGRNNQYASFTIPHKGKVKDIKLQ
HVSGGIECSEDIGSSGASYWGCHHYVYTSTDILTLITNNQNIPVFPPISQ
GVIRFTIPGTHIDSDEIVFTPSSPVAVQKGEEFRIWNTEDLYDSADGDNP
GTHCVHVLVKFC
Run BLAST on NCBI

transcript from alignment at sc0000007:916044..918484-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001193 ID=TCONS_00001193|Name=TCONS_00001193|organism=Clytia hemisphaerica|type=transcript|length=2441bp|location=Sequence derived from alignment at sc0000007:916044..918484- (Clytia hemisphaerica)
GGGGTCATCAAGTTTTCTCAAACTGCGTATGAGGACTAAATCCCCAAAAG TGCAAGGTAAAGGTATTTTTTAGTGCAAAATCTCTTTGTAGACTAAAGGT GTGTGTATAGTTTTTCCATCATTTGTACGGGTCACCTGTGACCCTTATAA ACCAACTTGTGGGCCATGTTTGGAAAGTTTTTGTTTTGATTGTTTGAAGA GACATTTAATAAAACATTTTTTATTTTGGGGAAATTTGATCCGGAGGAAA TAGGTTTCTCAGGGCAAAATAGTAACAAGCCAATTAACAGCATTAACTAT TTTAAAGACATCAAATGAAAATGGCACCTTCTTTATAATTTTGAAAGAAA AAGAAGTTCAAATTATCGGATTCTAATCAACCTTTTCAATGAATTTTCGT TTGAACGAATCGAAGAGAAGCGATCTCAAAATTTGATTAAAGTAAAAATT TAGAAATTTTTATTCGGAAGCTGTTTTCAAAGAGATTATTTTTTTCGAGA GAAGAAAAAAAAGGGATCATCTTCATTTTAGGGATGTTTGTAAAAGATGC TCGCTTCATATTCTTATTCATTGTCTTATTCTTGGATGCGATTAAATGTC ATCTTTATCAAAAATACCTCATCCCATCACAAAGTTATACAAAAGAAGGA GAAGTTTTTCGAACGAAATCACCCACCGAATGTCTATTACGTTGTGGGAA AAGAAAATGTATGAACACCATTATTGAAGATGAACATTGTCAATGTACAA CGACGGACTGTTTGGCGAATCGAGCGGCGATTAATGAAACGACGTCGCTG GTAGAATGCTATGAATGTGAGTGACAATGATGTTCTTTTCACCTTTCAAA TCAATTTATATTCCATGGGTCGTCACAGTCTTTCTTTTGAAATATACATG CTGATTAATTTGTATTACGGAAGTACAATCTATTGCCAACAGTTAAACCA GGGATATGTTATAGCGGAGCTGGATAACTCCCATTTAAAAAAGCCTTGTT CTATCTCTGTCCCTGACATTAAAATTTGAAATGAAATTTAACTTTTTTAA TTACAAACTCGTGAAATTTGGATCTCCTCTTAGCAAATGATTCTGCTGCT GCATTTATCGTTCACGATCAAAAACTTTTAATTATCAAGAGTGTCTGTAA AACATTGGTGAATGACAATTTAAAAATATGAAAAACATTATTTTCATTAG TAAAGTTATAAGAAGCTTCTTCTCTAAGATTATAAATGGTACTTTTTCAT TTGAAATACCACGCTACACCGCGGGGTGCCTAACTTTCTAACTGATATTT TCAGATAGCAAGTCGGTATGTCTGATTATGGAAAAAATTTCAAGTCAATT GAAACAATATTTGTCAAAATATTTACATCCGATATTTTTAAAGAGAAATC ATGAAAGCTTCTCAAATTCTTAACACACGCTGATAAAAATACAAAATAGA TTTCATTTACAAGGAAGCTTTTGGGGTATCTTCTACAAATATTATTTTGA TGAAAAGCGGGAACATCATAGCAAAATATGTGCAAACGTACTGCATGAAT ACTATGTCTGCTTCATTTTTCTTATAAAAACAGAACACTCAAGGGGACAG AGATGGATTTCTATTATCAACAGTTTACAATAGAAAAGAGAAAGTCCTTC ATCCAGCTCCGCTATAACATATCCCTGGTTAAACCTCAGGATGTCAGCTA GGTCGAAGTGGTAAAATAGTCAGATTCGGTTTGTTGTTTTCTAACTGTTT TTAAGCTTAAAATTCTAGTTTTAAAGTAAAGAGCCAATGAGAATCACCTT ATTGTAACTTCCTATTATAGCTCCACTGTTGCCGGTGACAGCAGGACCGA TTTGTTACAAAGGACGAAACAACCAATATGCTTCATTCACTATACCACAC AAAGGAAAAGTCAAGGACATTAAACTCCAACATGTCTCAGGTGGGATCGA GTGTTCGGAAGACATAGGAAGTTCTGGTGCAAGTTATTGGGGTTGTCATC ATTATGTTTATACTTCAACTGATATCTTGACACTCATCACAAACAATCAA AATATACCAGTTTTTCCGCCGATCAGCCAGGGAGTAATAAGGTTCACAAT ACCAGGTACACATATTGACTCAGATGAGATTGTTTTCACTCCTTCCTCGC CAGTGGCAGTTCAGAAGGGCGAAGAATTTCGTATTTGGAACACTGAAGAT TTATATGATTCTGCTGACGGAGATAACCCTGGTACCCACTGTGTTCACGT TCTTGTCAAATTTTGCTGATATTTAACCTGATATCTAACATTCCACATTC CAATAATAAAAATAATAATTTAGCTAAGAACATTGATCTATGCTTATAAA TAGCGATTCTTATAGATAAAGATTCGTTTTTCAAATCTGCTTGAGCCAAC TTCTACCTACGATGGTGCCCTACTTTCAAGTAAAAAAAGAG

Coding sequence (CDS) from alignment at sc0000007:916044..918484-

>TCONS_00001193 ID=TCONS_00001193|Name=TCONS_00001193|organism=Clytia hemisphaerica|type=CDS|length=2367bp|location=Sequence derived from alignment at sc0000007:916044..918484- (Clytia hemisphaerica)
CTCCACTGTTGCCGGTGACAGCAGGACCGATTTGTTACAAAGGACGAAAC
AACCAATATGCTTCATTCACTATACCACACAAAGGAAAAGTCAAGGACAT
TAAACTCCAACATGTCTCAGGTGGGATCGAGTGTTCGGAAGACATAGGAA
GTTCTGGTGCAAGTTATTGGGGTTGTCATCATTATGTTTATACTTCAACT
GATATCTTGACACTCATCACAAACAATCAAAATATACCAGTTTTTCCGCC
GATCAGCCAGGGAGTAATAAGGTTCACAATACCAGGTACACATATTGACT
CAGATGAGATTGTTTTCACTCCTTCCTCGCCAGTGGCAGTTCAGAAGGGC
GAAGAATTTCGTATTTGGAACACTGAAGATTTATATGATTCTGCTGACGG
AGATAACCCTGGTACCCACTGTGTTCACGTTCTTGTCAAATTTTGCTGAG
GATGTTTGTAAAAGATGCTCGCTTCATATTCTTATTCATTGTCTTATTCT
TGGATGCGATTAAATGTCATCTTTATCAAAAATACCTCATCCCATCACAA
AGTTATACAAAAGAAGGAGAAGTTTTTCGAACGAAATCACCCACCGAATG
TCTATTACGTTGTGGGAAAAGAAAATGTATGAACACCATTATTGAAGATG
AACATTGTCAATGTACAACGACGGACTGTTTGGCGAATCGAGCGGCGATT
AATGAAACGACGTCGCTGGTAGAATGCTATGAATGGGTCATCAAGTTTTC
TCAAACTGCGTATGAGGACTAAATCCCCAAAAGTGCAAGCTCCACTGTTG
CCGGTGACAGCAGGACCGATTTGTTACAAAGGACGAAACAACCAATATGC
TTCATTCACTATACCACACAAAGGAAAAGTCAAGGACATTAAACTCCAAC
ATGTCTCAGGTGGGATCGAGTGTTCGGAAGACATAGGAAGTTCTGGTGCA
AGTTATTGGGGTTGTCATCATTATGTTTATACTTCAACTGATATCTTGAC
ACTCATCACAAACAATCAAAATATACCAGTTTTTCCGCCGATCAGCCAGG
GAGTAATAAGGTTCACAATACCAGGTACACATATTGACTCAGATGAGATT
GTTTTCACTCCTTCCTCGCCAGTGGCAGTTCAGAAGGGCGAAGAATTTCG
TATTTGGAACACTGAAGATTTATATGATTCTGCTGACGGAGATAACCCTG
GTACCCACTGTGTTCACGTTCTTGTCAAATTTTGCTGAGGATGTTTGTAA
AAGATGCTCGCTTCATATTCTTATTCATTGTCTTATTCTTGGATGCGATT
AAATGTCATCTTTATCAAAAATACCTCATCCCATCACAAAGTTATACAAA
AGAAGGAGAAGTTTTTCGAACGAAATCACCCACCGAATGTCTATTACGTT
GTGGGAAAAGAAAATGTATGAACACCATTATTGAAGATGAACATTGTCAA
TGTACAACGACGGACTGTTTGGCGAATCGAGCGGCGATTAATGAAACGAC
GTCGCTGGTAGAATGCTATGAATGGGTCATCAAGTTTTCTCAAACTGCGT
ATGAGGACTAAATCCCCAAAAGTGCAAGCTCCACTGTTGCCGGTGACAGC
AGGACCGATTTGTTACAAAGGACGAAACAACCAATATGCTTCATTCACTA
TACCACACAAAGGAAAAGTCAAGGACATTAAACTCCAACATGTCTCAGGT
GGGATCGAGTGTTCGGAAGACATAGGAAGTTCTGGTGCAAGTTATTGGGG
TTGTCATCATTATGTTTATACTTCAACTGATATCTTGACACTCATCACAA
ACAATCAAAATATACCAGTTTTTCCGCCGATCAGCCAGGGAGTAATAAGG
TTCACAATACCAGGTACACATATTGACTCAGATGAGATTGTTTTCACTCC
TTCCTCGCCAGTGGCAGTTCAGAAGGGCGAAGAATTTCGTATTTGGAACA
CTGAAGATTTATATGATTCTGCTGACGGAGATAACCCTGGTACCCACTGT
GTTCACGTTCTTGTCAAATTTTGCTGAGGATGTTTGTAAAAGATGCTCGC
TTCATATTCTTATTCATTGTCTTATTCTTGGATGCGATTAAATGTCATCT
TTATCAAAAATACCTCATCCCATCACAAAGTTATACAAAAGAAGGAGAAG
TTTTTCGAACGAAATCACCCACCGAATGTCTATTACGTTGTGGGAAAAGA
AAATGTATGAACACCATTATTGAAGATGAACATTGTCAATGTACAACGAC
GGACTGTTTGGCGAATCGAGCGGCGATTAATGAAACGACGTCGCTGGTAG
AATGCTATGAATGGGTCATCAAGTTTTCTCAAACTGCGTATGAGGACTAA
ATCCCCAAAAGTGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000647XLOC_000647Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001193-proteinTCONS_00001193-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001193-exon-sc0000007-1575043694:918429..918484TCONS_00001193-exon-sc0000007-1575043694:918429..918484Clytia hemisphaericaexon
TCONS_00001193-exon-sc0000007-1575043694:917669..917953TCONS_00001193-exon-sc0000007-1575043694:917669..917953Clytia hemisphaericaexon
TCONS_00001193-exon-sc0000007-1575043694:916044..916664TCONS_00001193-exon-sc0000007-1575043694:916044..916664Clytia hemisphaericaexon
TCONS_00001193-exon-sc0000007-1510915933:918429..918484TCONS_00001193-exon-sc0000007-1510915933:918429..918484Clytia hemisphaericaexon
TCONS_00001193-exon-sc0000007-1510915933:917669..917953TCONS_00001193-exon-sc0000007-1510915933:917669..917953Clytia hemisphaericaexon
TCONS_00001193-exon-sc0000007-1510915933:916044..916664TCONS_00001193-exon-sc0000007-1510915933:916044..916664Clytia hemisphaericaexon
TCONS_00001193-exon-sc0000007-1491911889:918429..918484TCONS_00001193-exon-sc0000007-1491911889:918429..918484Clytia hemisphaericaexon
TCONS_00001193-exon-sc0000007-1491911889:917669..917953TCONS_00001193-exon-sc0000007-1491911889:917669..917953Clytia hemisphaericaexon
TCONS_00001193-exon-sc0000007-1491911889:916044..916664TCONS_00001193-exon-sc0000007-1491911889:916044..916664Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:916044..918484 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0471152 0.0459447 0.320077 0.260955 0 0 0 0.113417 0.277921 0.196715 0.095468 0.347679 2.00543 2.14529 0.481564 0.344528 0.247584 0.648494 3.95668 4.66189 1.45772 1.93309 0.748419 1.42428 2.52927 5.23698 0.516834 0.137895 0.156883 0.0532795
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001193 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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