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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001192 ID=TCONS_00001192|Name=TCONS_00001192|organism=Clytia hemisphaerica|type=transcript|length=921bp
caatttttacgaaaaattcCTCATCCCATCACAAAGTTATACAAAAGAAG
GAGGAGTTTTTCGAACGAAATCACCCACTGAATGTTTATTACGTTGTGGg
aaaagaaaatgtatgaacACCATTATTGAAGATGAACATTGTCAATGTAC
GACAACGGACTGTTTGGCGAATCGAGCGGCGAGCAATGAAACGACGTCGA
TGGTAGAATGCTACCTAAGTCCGGTAAGTCCAATCACAATCACACCAATC
TGTTACCAAGGTAAAAACAGCAAGTACGCCCCCTTCAAAATACCATACAA
CGGAGTAGTCAAGTATGTTCAACTGCATCACCTTTCTGGAGGGATAGAAT
GTGGCACAGGGTCGGGTAGCTatggtaaaagtttttggggATGTGACCAC
GCATCCCATGTATCGGATCAAATTTTTACAGTCATCACTAATAACAAAAA
TGAAGTTCTTTTTCCAACAGTGAGCGGGAGAGTTCACTATATTCACATGC
CAGGTACACACATCAATGCAAATGAATTGACATTGAAGCCACAGAAACAT
GTGGAAGTTCAGAGAGGTGATGAGTTGAGAGTATGGCACACTGAGGACTT
ATTCAAATGGCATGAGTGGGATAATTCTGGTGAACATTGTATCAGTGTTT
CTGTTAAATTTTGCTGATGTATTTAACGACAAACTACAGGAATACAACAA
GAACATTGACACGGTGTcatattcttttgaaaaagatacCTAGATGATAT
GACTTTGAAAGTTCAACGTCTTCCCAATGACAGCTCTACAGTTAATAAAG
CATGttcacgaattgaaaaatttcgtgttaataaaaacccccttaattaa
aaccagccgtggtgtccttaaaaaagcaaataaaattcgtgttaattttt
tgcgtgttaatttcaaggccg Run BLAST on NCBI protein sequence of TCONS_00001192-protein >TCONS_00001192-protein ID=TCONS_00001192-protein|Name=TCONS_00001192-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
NFYEKFLIPSQSYTKEGGVFRTKSPTECLLRCGKRKCMNTIIEDEHCQCT
TTDCLANRAASNETTSMVECYLSPVSPITITPICYQGKNSKYAPFKIPYN
GVVKYVQLHHLSGGIECGTGSGSYGKSFWGCDHASHVSDQIFTVITNNKN
EVLFPTVSGRVHYIHMPGTHINANELTLKPQKHVEVQRGDELRVWHTEDL
FKWHEWDNSGEHCISVSVKFC Run BLAST on NCBI transcript from alignment at sc0000007:912281..913522- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001192 ID=TCONS_00001192|Name=TCONS_00001192|organism=Clytia hemisphaerica|type=transcript|length=1242bp|location=Sequence derived from alignment at sc0000007:912281..913522- (Clytia hemisphaerica)
CAATTTTTACGAAAAATTCCTCATCCCATCACAAAGTTATACAAAAGAAG
GAGGAGTTTTTCGAACGAAATCACCCACTGAATGTTTATTACGTTGTGGG
AAAAGAAAATGTATGAACACCATTATTGAAGATGAACATTGTCAATGTAC
GACAACGGACTGTTTGGCGAATCGAGCGGCGAGCAATGAAACGACGTCGA
TGGTAGAATGCTACCTAAGTAAGTAAAAATCTATTATTTACCGGTATATA
TAAATACCTCTTTATTCATTAAATAGCCTTTCAAAAAAATCAGTTTTCTC
TACACCAGCTAAATAAAAGAAATCAACCTATCTGCTTATTTCAATATCTG
ATGCAGTTAATAACAAATTTTTGAGGGTCAATTAAGGAACGAATTCTACA
AAAATGAAAAACAAAACCACTTCTTCAGTATTTCACGCCTCCGCGTTTAT
TAGGAATTAACAAGTTTTCCTCCCTTAGCTCAAATAACCAAATAATAGTA
TAGTCGTGTCTAACCAATCTATTATACATTTCAATGCAGGTCCGGTAAGT
CCAATCACAATCACACCAATCTGTTACCAAGGTAAAAACAGCAAGTACGC
CCCCTTCAAAATACCATACAACGGAGTAGTCAAGTATGTTCAACTGCATC
ACCTTTCTGGAGGGATAGAATGTGGCACAGGGTCGGGTAGCTATGGTAAA
AGTTTTTGGGGATGTGACCACGCATCCCATGTATCGGATCAAATTTTTAC
AGTCATCACTAATAACAAAAATGAAGTTCTTTTTCCAACAGTGAGCGGGA
GAGTTCACTATATTCACATGCCAGGTACACACATCAATGCAAATGAATTG
ACATTGAAGCCACAGAAACATGTGGAAGTTCAGAGAGGTGATGAGTTGAG
AGTATGGCACACTGAGGACTTATTCAAATGGCATGAGTGGGATAATTCTG
GTGAACATTGTATCAGTGTTTCTGTTAAATTTTGCTGATGTATTTAACGA
CAAACTACAGGAATACAACAAGAACATTGACACGGTGTCATATTCTTTTG
AAAAAGATACCTAGATGATATGACTTTGAAAGTTCAACGTCTTCCCAATG
ACAGCTCTACAGTTAATAAAGCATGTTCACGAATTGAAAAATTTCGTGTT
AATAAAAACCCCCTTAATTAAAACCAGCCGTGGTGTCCTTAAAAAAGCAA
ATAAAATTCGTGTTAATTTTTTGCGTGTTAATTTCAAGGCCG Coding sequence (CDS) from alignment at sc0000007:912281..913522- >TCONS_00001192 ID=TCONS_00001192|Name=TCONS_00001192|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at sc0000007:912281..913522- (Clytia hemisphaerica)
GTCCGGTAAGTCCAATCACAATCACACCAATCTGTTACCAAGGTAAAAAC
AGCAAGTACGCCCCCTTCAAAATACCATACAACGGAGTAGTCAAGTATGT
TCAACTGCATCACCTTTCTGGAGGGATAGAATGTGGCACAGGGTCGGGTA
GCTATGGTAAAAGTTTTTGGGGATGTGACCACGCATCCCATGTATCGGAT
CAAATTTTTACAGTCATCACTAATAACAAAAATGAAGTTCTTTTTCCAAC
AGTGAGCGGGAGAGTTCACTATATTCACATGCCAGGTACACACATCAATG
CAAATGAATTGACATTGAAGCCACAGAAACATGTGGAAGTTCAGAGAGGT
GATGAGTTGAGAGTATGGCACACTGAGGACTTATTCAAATGGCATGAGTG
GGATAATTCTGGTGAACATTGTATCAGTGTTTCTGTTAAATTTTGCTGAA
ATTTTTACGAAAAATTCCTCATCCCATCACAAAGTTATACAAAAGAAGGA
GGAGTTTTTCGAACGAAATCACCCACTGAATGTTTATTACGTTGTGGGAA
AAGAAAATGTATGAACACCATTATTGAAGATGAACATTGTCAATGTACGA
CAACGGACTGTTTGGCGAATCGAGCGGCGAGCAATGAAACGACGTCGATG
GTAGAATGCTACCTAAGTCCGGTAAGTCCAATCACAATCACACCAATCTG
TTACCAAGGTAAAAACAGCAAGTACGCCCCCTTCAAAATACCATACAACG
GAGTAGTCAAGTATGTTCAACTGCATCACCTTTCTGGAGGGATAGAATGT
GGCACAGGGTCGGGTAGCTATGGTAAAAGTTTTTGGGGATGTGACCACGC
ATCCCATGTATCGGATCAAATTTTTACAGTCATCACTAATAACAAAAATG
AAGTTCTTTTTCCAACAGTGAGCGGGAGAGTTCACTATATTCACATGCCA
GGTACACACATCAATGCAAATGAATTGACATTGAAGCCACAGAAACATGT
GGAAGTTCAGAGAGGTGATGAGTTGAGAGTATGGCACACTGAGGACTTAT
TCAAATGGCATGAGTGGGATAATTCTGGTGAACATTGTATCAGTGTTTCT
GTTAAATTTTGCTGAAATTTTTACGAAAAATTCCTCATCCCATCACAAAG
TTATACAAAAGAAGGAGGAGTTTTTCGAACGAAATCACCCACTGAATGTT
TATTACGTTGTGGGAAAAGAAAATGTATGAACACCATTATTGAAGATGAA
CATTGTCAATGTACGACAACGGACTGTTTGGCGAATCGAGCGGCGAGCAA
TGAAACGACGTCGATGGTAGAATGCTACCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001192-exon-sc0000007-1575043694:913305..913522 | TCONS_00001192-exon-sc0000007-1575043694:913305..913522 | Clytia hemisphaerica | exon |
| TCONS_00001192-exon-sc0000007-1575043694:912281..912983 | TCONS_00001192-exon-sc0000007-1575043694:912281..912983 | Clytia hemisphaerica | exon |
| TCONS_00001192-exon-sc0000007-1510915933:913305..913522 | TCONS_00001192-exon-sc0000007-1510915933:913305..913522 | Clytia hemisphaerica | exon |
| TCONS_00001192-exon-sc0000007-1510915933:912281..912983 | TCONS_00001192-exon-sc0000007-1510915933:912281..912983 | Clytia hemisphaerica | exon |
| TCONS_00001192-exon-sc0000007-1491911889:913305..913522 | TCONS_00001192-exon-sc0000007-1491911889:913305..913522 | Clytia hemisphaerica | exon |
| TCONS_00001192-exon-sc0000007-1491911889:912281..912983 | TCONS_00001192-exon-sc0000007-1491911889:912281..912983 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:912281..913522 - |
Blast
The following BLAST results are available for this feature:
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