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TCONS_00001183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001183
Unique NameTCONS_00001183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length871

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001183 ID=TCONS_00001183|Name=TCONS_00001183|organism=Clytia hemisphaerica|type=transcript|length=871bp
GGAGTACCTGGCTCCTCAATGACTGGGGTAGCTGGCTCCTCAACAACTGG
GGTGGTTGTCTCTTCGACAATTAGAGCAGCTGGCTCCTCAACAACTGGGG
CAGCCAATTCCTCAATGACTGGGGCAGCCTGTTCCTTAACAACTGGGGCA
GCCTGTTCCTCACTGACTGGGGCAGCCTCTTCTGTAGGAGCCTTTACTAC
TGGAACAACTTCTTCAACAACTGGAAGAGCAGGCTCCTCAGTAGGTTCTT
CTTCTTCAAGGATGGTTGAAGGAATTGGTGCTGCTGGAGGTGGAATAGTT
GGTGGAGGTGGGAGGTCTTCGATTGTATCTTCCTCTGTATCTGAAACCGG
TTCAGTTTCAATTGGAATATCATCAAGTTCTTTTTGAGAAGATAGAGTTT
GAAGATTAACATAGTGTGGTGATTGAGGTGGTGTATCTTCTGTGTTTTGA
ACTAGGCAATCATATGCAGGTGGGCGATCCTCCATATCAGCAGCTTGGGA
AACATCAGAAGATTCTTCTCGTTCAGCCAGTAATTCAGGTGTGAGTGGTA
ATACAGGTTTCTCTTTTGGTACTTCATCAATGTCATCTACTGGTTCACCA
GCTTCACTACTTGAAGCACTAACTAATACCACAGTTGTGCTTTCCGCTGG
TTCTGCAACAATACTGGCTTCCTTGACATCTTCTGAGTAAGTTTCTGTTA
AAACAGAGACACTCTCTTCATCACTTTCCGGTGCAGGAGTGCTAGTTTCG
ACAGGAGAGTCTACTTTAGGTGCATCAGTATCATCTTGCTCCAGTTCTTT
GAGGTCAGGATACAACGATTGAGTAGGATGAATGGACTAAAAATCAATTC
ACGAGAATCAGTTAATGAAAT
Run BLAST on NCBI

transcript from alignment at sc0000007:746819..748689-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001183 ID=TCONS_00001183|Name=TCONS_00001183|organism=Clytia hemisphaerica|type=transcript|length=1871bp|location=Sequence derived from alignment at sc0000007:746819..748689- (Clytia hemisphaerica)
GGAGTACCTGGCTCCTCAATGACTGGGGTAGCTGGCTCCTCAACAACTGG GGTGGTTGTCTCTTCGACAATTAGAGCAGCTGGCTCCTCAACAACTGGGG CAGCCAATTCCTCAATGACTGGGGCAGCCTGTTCCTTAACAACTGGGGCA GCCTGTTCCTCACTGACTGGGGCAGCCTCTTCTGTAGGAGCCTTTACTAC TGGAACAACTTCTTCAACAACTGGAAGAGCAGGCTCCTCAGTAGGTTCTT CTTCTTCAAGGATGGTTGAAGGAATTGGTGCTGCTGGAGGTGGAATAGTT GGTGGAGGTGGGAGGTCTTCGATTGTATCTTCCTCTGTATCTGAAACCGG TTCAGTTTCAATTGGAATATCATCAAGTTCTTTTTGAGAAGATAGAGTTT GAAGATTAACATAGTGTGGTGATTGAGGTGGTGTATCTTCTGTGTTTTGA ACTAGGCAATCATATGCAGGTGGGCGATCCTCCATATCAGCAGCTTGGGA AACATCAGAAGATTCTTCTCGTTCAGCCAGTAATTCAGGTGTGAGTGGTA ATACAGGTTTCTCTTTTGGTACTTCATCAATGTCATCTACTGGTTCACCA GCTTCACTACTTGAAGCACTAACTAATACCACAGTTGTGCTTTCCGCTGG TTCTGCAACAATACTGGCTTCCTTGACATCTTCTGAGTAAGTTTCTGTTA AAACAGAGACACTCTCTTCATCACTTTCCGGTGCAGGAGTGCTAGTTTCG ACAGGAGAGTCTACTTTAGGTGCATCAGTATCATCTTGCTCCAGTTCTTT GAGGTCAGGATACAACGATTGAGTAGGATGAATGGACTAAAAATCAATTC ACGAGAATCAGTTAATGAAATGTAACATGCAAAGTTGTGTAGAAAGCATC TGGCAGAACAGACAGAAAATAACTGGAAGCATGTCATGTTTTAATGAGAA AAAAAATTTATATTCTAAATTTCTATTATTTTCCCTTTATATTGCTTTAA AAGTGCTGTCTCGTTTTTGGTGATCGTAATATTTATAAATTAAAAATTGT TCAATTTTGACTATGCAACTAACCGAAACATCACTAGCTCTTGAAGATCG AGGTCTGTCTTTGTTGAATGCACCAGACTTGTATGCCTAAAGTGTAATAT AAACAAATTTTGCATTGGTTAAAGGAAACAAGAACGATATTGATCAACAA TTTGGCTTTGCGGCAGGAAATGTGGTGTCATGGTGAGTTTCCTTAACTGG AGACATCCTGTAGTAAAAATAAAATGTTTTCCTTGTATTTTTCTCTTTAT TAAATCAATCGGAATAAGCAAAAGAAATTGTATTAATTATAGGTAGGGTA AATACATATGATTCAGTTCATTAAGTACTATCAATTAAAAGTAAGGGGAG CCACTTAGTTATGATTTATTGCCTCTTTAAAGAAAATTACAATACACAGG ATGTCGTTTCAGTTGGCTATCACACTGAACAAACACTATTCAGGTCAAAT TTCAATTTTTATCAGACAGCTATTACAATAAAATAAAAACAAAATACATT TGGAAGCGTCTTGTTGTGTAATCTCAAAAGTAAAACAAGAACATGTAGAT CTATAGATTAACACCTTTTATAAAAGTAAAGTTACTTTTATAAAAATTTC TAAAGTTTAATCATAACACACAATACTACAGAATACTACAATAATAAGAT AACCTATGATTTAAAAAGATATGAAATGATATTAAGAATAATAAGNTTCG ACAGGAGAGTCTACTTTAGGTGCATCAGTATCATCTTGCTCCAGTTCTTT GAGGTCAGGATACAACGATTGAGTAGGATGAATGGACTAAAAATCAATTC ACGAGAATCAGTTAATGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000643XLOC_000643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001183-exon-sc0000007-1575043694:747887..748689TCONS_00001183-exon-sc0000007-1575043694:747887..748689Clytia hemisphaericaexon
TCONS_00001183-exon-sc0000007-1575043694:746819..746886TCONS_00001183-exon-sc0000007-1575043694:746819..746886Clytia hemisphaericaexon
TCONS_00001183-exon-sc0000007-1510915933:747887..748689TCONS_00001183-exon-sc0000007-1510915933:747887..748689Clytia hemisphaericaexon
TCONS_00001183-exon-sc0000007-1510915933:746819..746886TCONS_00001183-exon-sc0000007-1510915933:746819..746886Clytia hemisphaericaexon
TCONS_00001183-exon-sc0000007-1491911889:747887..748689TCONS_00001183-exon-sc0000007-1491911889:747887..748689Clytia hemisphaericaexon
TCONS_00001183-exon-sc0000007-1491911889:746819..746886TCONS_00001183-exon-sc0000007-1491911889:746819..746886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:746819..748689 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.48882 7.70022 3.64053 4.12852 43.5007 34.5884 41.1359 46.4193 34.7326 49.5286 32.9508 24.2019 40.7115 41.6704 87.222 103.651 99.1744 94.7046 40.2151 59.2665 49.0883 55.399 57.672 75.9029 56.1735 50.5611 107.603 102.738 65.5675 55.8264
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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