TCONS_00001183 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001183
Unique NameTCONS_00001183
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length871

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001183 ID=TCONS_00001183|Name=TCONS_00001183|organism=Clytia hemisphaerica|type=transcript|length=871bp
GGAGTACCTGGCTCCTCAATGACTGGGGTAGCTGGCTCCTCAACAACTGG
GGTGGTTGTCTCTTCGACAATTAGAGCAGCTGGCTCCTCAACAACTGGGG
CAGCCAATTCCTCAATGACTGGGGCAGCCTGTTCCTTAACAACTGGGGCA
GCCTGTTCCTCACTGACTGGGGCAGCCTCTTCTGTAGGAGCCTTTACTAC
TGGAACAACTTCTTCAACAACTGGAAGAGCAGGCTCCTCAGTAGGTTCTT
CTTCTTCAAGGATGGTTGAAGGAATTGGTGCTGCTGGAGGTGGAATAGTT
GGTGGAGGTGGGAGGTCTTCGATTGTATCTTCCTCTGTATCTGAAACCGG
TTCAGTTTCAATTGGAATATCATCAAGTTCTTTTTGAGAAGATAGAGTTT
GAAGATTAACATAGTGTGGTGATTGAGGTGGTGTATCTTCTGTGTTTTGA
ACTAGGCAATCATATGCAGGTGGGCGATCCTCCATATCAGCAGCTTGGGA
AACATCAGAAGATTCTTCTCGTTCAGCCAGTAATTCAGGTGTGAGTGGTA
ATACAGGTTTCTCTTTTGGTACTTCATCAATGTCATCTACTGGTTCACCA
GCTTCACTACTTGAAGCACTAACTAATACCACAGTTGTGCTTTCCGCTGG
TTCTGCAACAATACTGGCTTCCTTGACATCTTCTGAGTAAGTTTCTGTTA
AAACAGAGACACTCTCTTCATCACTTTCCGGTGCAGGAGTGCTAGTTTCG
ACAGGAGAGTCTACTTTAGGTGCATCAGTATCATCTTGCTCCAGTTCTTT
GAGGTCAGGATACAACGATTGAGTAGGATGAATGGACTAAAAATCAATTC
ACGAGAATCAGTTAATGAAAT
Run BLAST on NCBI

transcript from alignment at sc0000007:746819..748689-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001183 ID=TCONS_00001183|Name=TCONS_00001183|organism=Clytia hemisphaerica|type=transcript|length=1871bp|location=Sequence derived from alignment at sc0000007:746819..748689- (Clytia hemisphaerica)
GGAGTACCTGGCTCCTCAATGACTGGGGTAGCTGGCTCCTCAACAACTGG
GGTGGTTGTCTCTTCGACAATTAGAGCAGCTGGCTCCTCAACAACTGGGG
CAGCCAATTCCTCAATGACTGGGGCAGCCTGTTCCTTAACAACTGGGGCA
GCCTGTTCCTCACTGACTGGGGCAGCCTCTTCTGTAGGAGCCTTTACTAC
TGGAACAACTTCTTCAACAACTGGAAGAGCAGGCTCCTCAGTAGGTTCTT
CTTCTTCAAGGATGGTTGAAGGAATTGGTGCTGCTGGAGGTGGAATAGTT
GGTGGAGGTGGGAGGTCTTCGATTGTATCTTCCTCTGTATCTGAAACCGG
TTCAGTTTCAATTGGAATATCATCAAGTTCTTTTTGAGAAGATAGAGTTT
GAAGATTAACATAGTGTGGTGATTGAGGTGGTGTATCTTCTGTGTTTTGA
ACTAGGCAATCATATGCAGGTGGGCGATCCTCCATATCAGCAGCTTGGGA
AACATCAGAAGATTCTTCTCGTTCAGCCAGTAATTCAGGTGTGAGTGGTA
ATACAGGTTTCTCTTTTGGTACTTCATCAATGTCATCTACTGGTTCACCA
GCTTCACTACTTGAAGCACTAACTAATACCACAGTTGTGCTTTCCGCTGG
TTCTGCAACAATACTGGCTTCCTTGACATCTTCTGAGTAAGTTTCTGTTA
AAACAGAGACACTCTCTTCATCACTTTCCGGTGCAGGAGTGCTAGTTTCG
ACAGGAGAGTCTACTTTAGGTGCATCAGTATCATCTTGCTCCAGTTCTTT
GAGGTCAGGATACAACGATTGAGTAGGATGAATGGACTAAAAATCAATTC
ACGAGAATCAGTTAATGAAATGTAACATGCAAAGTTGTGTAGAAAGCATC
TGGCAGAACAGACAGAAAATAACTGGAAGCATGTCATGTTTTAATGAGAA
AAAAAATTTATATTCTAAATTTCTATTATTTTCCCTTTATATTGCTTTAA
AAGTGCTGTCTCGTTTTTGGTGATCGTAATATTTATAAATTAAAAATTGT
TCAATTTTGACTATGCAACTAACCGAAACATCACTAGCTCTTGAAGATCG
AGGTCTGTCTTTGTTGAATGCACCAGACTTGTATGCCTAAAGTGTAATAT
AAACAAATTTTGCATTGGTTAAAGGAAACAAGAACGATATTGATCAACAA
TTTGGCTTTGCGGCAGGAAATGTGGTGTCATGGTGAGTTTCCTTAACTGG
AGACATCCTGTAGTAAAAATAAAATGTTTTCCTTGTATTTTTCTCTTTAT
TAAATCAATCGGAATAAGCAAAAGAAATTGTATTAATTATAGGTAGGGTA
AATACATATGATTCAGTTCATTAAGTACTATCAATTAAAAGTAAGGGGAG
CCACTTAGTTATGATTTATTGCCTCTTTAAAGAAAATTACAATACACAGG
ATGTCGTTTCAGTTGGCTATCACACTGAACAAACACTATTCAGGTCAAAT
TTCAATTTTTATCAGACAGCTATTACAATAAAATAAAAACAAAATACATT
TGGAAGCGTCTTGTTGTGTAATCTCAAAAGTAAAACAAGAACATGTAGAT
CTATAGATTAACACCTTTTATAAAAGTAAAGTTACTTTTATAAAAATTTC
TAAAGTTTAATCATAACACACAATACTACAGAATACTACAATAATAAGAT
AACCTATGATTTAAAAAGATATGAAATGATATTAAGAATAATAAGNTTCG
ACAGGAGAGTCTACTTTAGGTGCATCAGTATCATCTTGCTCCAGTTCTTT
GAGGTCAGGATACAACGATTGAGTAGGATGAATGGACTAAAAATCAATTC
ACGAGAATCAGTTAATGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000643XLOC_000643Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001183-exon-sc0000007-1575043694:747887..748689TCONS_00001183-exon-sc0000007-1575043694:747887..748689Clytia hemisphaericaexon
TCONS_00001183-exon-sc0000007-1575043694:746819..746886TCONS_00001183-exon-sc0000007-1575043694:746819..746886Clytia hemisphaericaexon
TCONS_00001183-exon-sc0000007-1510915933:747887..748689TCONS_00001183-exon-sc0000007-1510915933:747887..748689Clytia hemisphaericaexon
TCONS_00001183-exon-sc0000007-1510915933:746819..746886TCONS_00001183-exon-sc0000007-1510915933:746819..746886Clytia hemisphaericaexon
TCONS_00001183-exon-sc0000007-1491911889:747887..748689TCONS_00001183-exon-sc0000007-1491911889:747887..748689Clytia hemisphaericaexon
TCONS_00001183-exon-sc0000007-1491911889:746819..746886TCONS_00001183-exon-sc0000007-1491911889:746819..746886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:746819..748689 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.48882	7.70022	3.64053	4.12852	43.5007	34.5884	41.1359	46.4193	34.7326	49.5286	32.9508	24.2019	40.7115	41.6704	87.222	103.651	99.1744	94.7046	40.2151	59.2665	49.0883	55.399	57.672	75.9029	56.1735	50.5611	107.603	102.738	65.5675	55.8264
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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