TCONS_00001181 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001181
Unique NameTCONS_00001181
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1129

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001181 ID=TCONS_00001181|Name=TCONS_00001181|organism=Clytia hemisphaerica|type=transcript|length=1129bp
GTCTTCTGTCTAATGAACTGGAGGAAACAGGTGTTATAACATAAAGGGAC
TGAAGATAAGGTCATgACAATGAAACAATCAGCGACTTATTAAAGAGATT
GAAAGAATTACCAATCACATTAGACATCTTACAGAAAACTCGTATTGGAA
TGACAGTAAATGTTGTACGTAAAGCCAGCAATAAAGATGACATTCAAACT
GTTGCAAAAGGTTTAatcaaatcttggaaaaaacTTTTAGATACACAAGA
taaagacaaagaaaaagaaaaggagaAACCAAAAGTGAATAAACAAACGT
CCCAGGAGAAAGAAAGCAAGCCTGCACCACGAGATTCAAGAGCGGATTCA
GGTGGATCGTATGAAGTACCTCCACCCAAAGGAAATGATCCAATACGAAT
ACAATGTCGTGAAATGTTGGTCAAATCACTCAAACTGGAAGGCAGACcag
AATTCAACCCAGCATACATAGCAGCTGATATAGAAGAAGCAACGTACCAA
ATGTTTAAAGACACTggttcaaaatacaaaaatcgaaTTAAAAGTCGTGT
TATGAATCTACGAGATAAACGAAACCCTGCTCTAAAACAAATGGTGGCGG
AGGGTGAGATTTCACCCGAACGATTCGCCAATATGACGGCTGAGGAAATG
GCGACTGACGAATTGAGAGCTGAACGTGAAAAGATGACCAAACAAGCGAT
CAACGAACATCAACTAGCCACGTCAGCTGGTACAAGCACTGGTCAGTTCA
AATGTCATCGCTGTGGTAAAAGAAAAACCTCTTATAGTCAAGTACAAACA
CGTAGTGCGGATGAACCGATGACCACTTTTGTATATTGCAACGAATGTGG
CAACCGGTGGAAGTTTTGCTGACACCGGATGCACACATTGCCAACTATCA
AAGAAACAACACAGCACACTTTGTACATATTCCTCGCCCCTAATTTTTTA
AACCGTGTTCTTctttgaaacataaaattttatacaaaataatccaaaat
gtttgatacTTTTCCGCCTACTAAGATTGTCTATAAGATAATAACgaatt
ttgactttgtttgtCGGTAGAGTTTAGAGAAATTTTGTACAATGAATTTT
CAGAACATTAAAAAGTACCCTAAATTTCg
Run BLAST on NCBI

transcript from alignment at sc0000007:721829..729621-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001181 ID=TCONS_00001181|Name=TCONS_00001181|organism=Clytia hemisphaerica|type=transcript|length=7793bp|location=Sequence derived from alignment at sc0000007:721829..729621- (Clytia hemisphaerica)
GTCTTCTGTCTAATGAACTGGAGGAAACAGGTGTTATAACATAAAGGGAC
TGAAGATAAGGTCATGTAAGGCTGTTCTTGTAAACTTATTTACCTATGAA
AAACTGACTTCATTTTCAAGAGGATTCAAAGCTTGTATCTTTTTAAAAAT
ACATGCTTTACTCTGGGTTGTGGGTGTTTTGATAATGAAACTTCGTTACA
AGTTACAACCCTTTTTTTTGGGTCAGCAAAACTTCAAAACTTTTCTTGCC
ATTTTATCTATCTCTTTTATCTTAATTTCTTCCAACGACATTTCATTTTT
TAGTTGACTCTTTTGGACAAGACTTTTAGAAAGTGAAATTGATTTTTTAG
GACAATGAAACAATCAGCGACTTATTAAAGAGATTGAAAGAATTACCAAT
CACATTAGACATCTTACAGGTCAGAGATATTCAGATATTTTTCTGTTTAG
CCAAAATTCTCTTTCAGTCTTTCTCAACCCTCATAACTTCTTCGTTTGTA
ATCTCCATAAATTCATTATTCCACATTTACAAACAAAAAAACGTGAACAT
AGTTCTCTTGAACACTCTTGATTAGTTGCACAATTTTAGGGCTCACTTCT
CTAGTAATTATTTAAGAAAATTTATCTTGGAATTACAGTCAATGCAGGAG
GGAGTCGATACTGAAATCTCAGATATCATGTTGTTTAGTGACGTGATGGT
ACACCCAAAAAAACTTAAAAAAACTTCTGAGAAAAATGGTCCTGAGAAGA
CCAAAATTGGATGGTCTACGTGTAAAAAAGTCCCCAAAAGTTTTAGTTCA
TTTGTACTAAAATACAGCATTTCTAGAATTCTTAAAACCCTTATACATGT
CAGAGATTTTAGTACCAACCACCCCCTGGTCAATGTTGTATGTAAAGCCA
GCAAAAAGACTGGTGGAAGNGTTTGTAATCTCCATAAATTCATTATTCCA
CATTTACAAACAATGACGTAAACATAGTTCTCTTGAACACTCTTGATTAG
TTGTACAATTTTAGGGCTCACTTCTCTAGTAATTATTTCAGAAAATTTAG
CTTGGAATTACAGTCAATGCAGGAGGGGGTCGATACTGAAATCTCAGATA
TCATGTTGTTTAGTGACGTGATGGTACACCCAAAAAAACTTAAAACAACT
TCTGAGAAAAATGGTCCTGAGAAGACCAAAATTGGATGGTCTACGTGTAA
AAAAGTCCGCAAAAATTTTAGTTCATTTGTACTAAAATACAGCATTTCTA
GAATTCTTAAAACCCTTATACATGTCAGAGATTTTAGTACCTACCACCCC
CTGGTCAATGTTGTATGTAAAGCCAGCAAAAAGACTTTTAGGTGGAATTG
AAATTCAATTATCCTTATCACATATGTGTTTTTGTATTTCAGAAAACTCG
TATTGGAATGACAGTAAATGTTGTACGTAAAGCCAGCAATAAAGATGACA
TTCAAACTGTTGCAAAAGGTTTAATCAAATCTTGGAAAAAACTTTTAGGT
GAGAAGGAAATTCAATATCCTTAGCTTGAAAACTGCCCTTAACATCAGGA
AAGGCTCTGATCAATACATGTGTTTTGAATTAGTTTCTCTGTGAATTTTT
CAAGGAGTTTTAAACTTCACTTTTGAGAAGAATCTGGGCTGATCAAGCCA
TTATGTATAACATTCCTCATTTTCACTAACACATAGATACACAAGATAAA
GACAAAGAAAAAGAAAAGGAGAAACCAAAAGTGAATAAACAAACGTCCCA
GGAGAAAGAAAGCAAGCCTGCACCACGAGATTCAAGAGCGGATTCAGGTG
GATCGTATGAAGTACCTCCACCCAAAGGAAATGATCCAATACGAATACAA
TGTCGTGAAATGTTGGTCAAATCACTCAAACTGGAAGGCAGACCAGGTTT
CTTTGTTTTCTCTTAATACTGGATAGAAAAATTTCTCTTTTTTCTGTTAC
TTCTCTCCAATGCCGTTTGAAGAAGTTTTTTCTTGCAATTTAATTCAAGA
ATTTTGATCACACAAATAGTCAAAACTTCTAGGAAAGTTGGAAATTTGTT
GTAATTTGTTCAATTTGCCTAATTTGCCTAATTTGATGACCAAAATCACA
CATCAACATTAGCTGAAGTTATCTAATTTTATTGTTTTGATTGCAAATCT
CGAAATCCTTCAAAATTCACACAAAGATTTTTCCTTAAAGAATGGCATGA
AAGCTTTTATAATCTATATATTAATAGTATAACGCGTATGTCATTTTGTT
TTCTGTCTGTGTGTCACTTTCGATTTCGCAAGCAATGTTTTGTTCTTGGT
AAGTTTGTTTTGATTGACAGATCGGATAGAGCCTGGTTTAGACTTTATTC
AGCCTTTGTTTTGAAATTTAAGGCCCGTCTACATTTAGTAATTATAATTT
CTGCCTAGGCATGCCCGTTTTTCGTTTTTCTCTTTTCTTTTGTTTTTCTC
TTTTCTTTTGCTTAAATTCTTTTCGAATGTAATTAACGATCGTATTTATT
AATGACATTCGAATTCTTTTCAAAACAAATTCCTTTTACAGAAAAGAATA
ATTCAAATGTAAATCAAAACATAACAGTCAAAAAGTTTGTCAAACCAAAC
AACGACAGCATTCAAAAGGCGATAAAAAGCAAAAAGAGAAAATTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCAACCTCTTTCTTCATATAAAAAC
ATTCAAGTCGTCGTTACTGTCAAAAAGTGTGTACGTCATTTTACATGTTT
AAATTTGAAAAGTGGCTGCGTTTAGACCAACGCAACTGGCATTTTTAGTT
TGGCATTTGCTCATGAGGGGTTCGATTTTAATAGCTTTTCCATTGTATTT
TCTGTCATGGCATTTAAGGAATTTTTAGAGTCATTACTGAAAAGGTGATT
CCCTCAAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNACTTTTGACTTAAACAAAAAATTCGTCTACATC
CAAAGGACTTTTATTGCGTTCAGCTACAGCTTAACCGGCGTGCGACGCCG
GGTACCGGCTAGTTACATTTATAATTACATTGTAATTACATTTTTATAAA
ATTTTATAAAAACTTTTGAAAAATATTCTCCTACAAAAATACAGCCAAGT
ACAAAATGCAATTGGTTTAATTTCCGACTGATGTAGCCCTGAAATGAAGC
TTTCAAAACTCTGAACATAGGAATTAAAAATACTCTTTTTCTTTTTCTCC
TTGGGGCATAGGCCCTGAAGACCCCTAAAATGCCAACTCAAATCAATCTG
AGGCGGTTATTGCCATTATGTATTTCCCGTTAATCATTACATGTTGTACG
TTGTTCATTATACATTATGTATTATGCATTACGCAAAAGATACAAAGAAT
AATATTTTCTTTTCAAAATACACAAGGTGATTTTTCTTCCTTCATAATAA
TTACTCAAAATTTATTTTCGTGCAAAAAAAATATTTGCATGGAAAATATT
CTTGCAAGAATGCCGAAATATGTAAAATCATTTTCGTCATATTTTTTACG
AAAAATACAATGAAAAATACACTTTCCTTGAAACATATATGAAGCATTTT
CTCCAAAAATACACAAATGGAATGATATTGAAAGAATGAAATTTTTCCTT
TAAGATTACATTTTATTTATCAGAACTTTTCCCTCGAAAATACACAAAAT
GATCTTCCCTGAAAATTACTCAAAAATCCTTTTCCTACCAAAATACAAGG
AATTATCTTTTCCTTCAAGAATACATTAATACAATCTTTTATTTTTTAAA
TTAGTGTACAGTAAATCATATCTGCAAAAATAGAAATAATTTCAAAACTA
CCCAATATATTTTCTTTCCATCAGAATTTTTACAGGGACGGCTTATTTTC
TTATGCATCTTGGTTAAAATCATTTTGAAATATTACGAAAAAAGGAGGTG
ATCGGCTTATGACCAATGGTTATTTATAGNTTATGCATCTTGGTTAAAAT
CATTTTGAAATATTACGAAAAAAGGAGGTGATCGGCTTATGACCAATGGT
TATTTATAGTTCTTTTTCTTTAGAATTCAACCCAGCATACATAGCAGCTG
ATATAGAAGAAGCAACGTACCAAATGTTTAAAGACACTGGTTCAAAATAC
AAAAATCGAATTAAAAGTCGTGTTATGAATCTACGAGATAAACGAAACCC
TGCTCTAAAACAAATGGTGGCGGAGGGTGAGATTTCACCCGAACGATTCG
CCAATATGACGGCTGAGGTATAACTTTTGGAATACGGTGCGACCATACAA
CCTTCTAGGACTTCAGGCCCTAACTTATGTTGAGTAGGTTTAAGCATTAC
AAACATTACTTTTTAATAGACAATGAAATGCCTCGTTATTCTTTATTAAC
TGTTGTTCTTATGTGATCAGCCAAATTATTATACTGCGTTTGATTGTAAT
GTAAACGTGATAGAGTTAATTTAGATTATCTTTGTATCAAAAGGAAATGG
CGACTGACGAATTGAGAGCTGAACGTGAAAAGATGACCAAACAAGCGATC
AACGAACATCAACTAGCCACGTCAGCTGGTACAAGCACTGGTCAGTTCAA
ATGTCATCGCTGTGGTAAAAGAAAAACCTCTTATAGTCAAGTAAGTGTGA
CATTGATATTTAAAAAGGATTAATCGGGTATATTCAGATGCCATCATTTT
GCTGTCTAAAAATAATGTTTTCTTTATGTTGTGCCAGTCATTGATCATGG
ACAATTTATCGATGTAGCTCAAATCTTTCCCTCTTCTCCGGACTTTTCCT
CCGCAAGTAATCTCATAAATCTTTTCATGCAAGGGATTTAAGTCTTCGAG
GATGGGCTTTATAGGGGGCTGAGGTTCCACTTTATCGCCCTTGGCAGCCC
TTCGAAGAGTTTTTGTATTATACAGTTTGTGAGCTACCTCCACTGTAAAT
TGTACGGATAGATTTCAGGGATTTGGGGATGAATTATTAATCGGGCTTCT
CTACTATGTTTTTGATGTTTGGATATTTTCTTCTTCTTTTTCACACCAGG
TACAAACACGTAGTGCGGATGAACCGATGACCACTTTTGTATATTGCAAC
GAATGTGGCAACCGGTGGAAGGTACTCCTCTTTCTCTTAGTTTCTCTTAC
TTTTCATCTTGACCCTTTGAAAGAGAATACTTGTGAGTAAAAGATTAAAT
GTATAGGATAATTACATTTTGGCTTTCACTAGCTCCTGAAAGTCAACTCA
TGATCAGATCACTGTAATTCTTTTCTGAATGAATGGAAATTAGCTAGAAT
GTTAAAAATCATTTATTGATTGGTTATTGAGAATTGCAATGAATTAACGA
TTACACCATTTTTGGAACACCCCGGTGGGGTGGAGGTCCTATAAATTAAC
CTTTGTCCGTTCGTCCGTTCGTTCGTCATTAGCTTCCTCGTGATTGGCTC
GTTAGTTTTTCTGAATTTTTGCACAAAGATGTGTAACTATAAACCCTCGA
ATGTGACGGAGCCCGATTTTCGAAAAAAAAAATTTGGGGGCAAATTTGGG
CCAAAAAACGGCTAAAAAACGGGTTTTTTGGACTCTGTGAAAAATTGGAT
CGTTAACTTTTTCTAATTTTTTGCATGAAAGTAGGGTACTATCACAGGTA
AAAGATGGCTCAAGCAGATTTTCTCAAAAAGATTTTTTTGGCTCAAAAAA
CGCATGTTTATCTATAAGAATCACTATTAATAAGCATACATCAATGTTCT
TAGTTAAATTACTCAATTTTTTTATGAGATGGATGTTTTTTTGCTCACAA
AGTCTTGAATATGAAAGAATATCTCAAGAGCATGAAATTTTGGTTTTAAA
ACGTTTTTTTTATAAGAAACAGACGACTAATTTTAATAGATCGTCACTAT
TTGTGTTCTGAATGATTGTTTAATGGTCACGCTCACGTAGANGACTGATT
TTAATAGATCGTCACTATTTGTGTTCTGAATGATTGTTTAATGGTCACGC
TCACGTAGATATCAATTATATATGTGTTAAATACATAACTAGGTAGGTCC
ATAAAAGTATCACTTGTTTGTTTACAGTTTTGCTGACACCGGATGCACAC
ATTGCCAACTATCAAAGAAACAACACAGCACACTTTGTACATATTCCTCG
CCCCTAATTTTTTAAACCGTGTTCTTCTTTGAAACATAAAATTTTATACA
AAATAATCCAAAATGTTTGATACTTTTCCGCCTACTAAGATTGTCTATAA
GATAATAACGAATTTTGACTTTGTTTGTCGGTAGAGTTTAGAGAAATTTT
GTACAATGAATTTTCAGAACATTAAAAAGTACCCTAAATTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000642XLOC_000642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001181-exon-sc0000007-1575043694:729557..729621TCONS_00001181-exon-sc0000007-1575043694:729557..729621Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1575043694:729203..729271TCONS_00001181-exon-sc0000007-1575043694:729203..729271Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1575043694:728124..728229TCONS_00001181-exon-sc0000007-1575043694:728124..728229Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1575043694:727726..727935TCONS_00001181-exon-sc0000007-1575043694:727726..727935Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1575043694:723905..724098TCONS_00001181-exon-sc0000007-1575043694:723905..724098Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1575043694:723532..723678TCONS_00001181-exon-sc0000007-1575043694:723532..723678Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1575043694:723051..723122TCONS_00001181-exon-sc0000007-1575043694:723051..723122Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1575043694:721829..722094TCONS_00001181-exon-sc0000007-1575043694:721829..722094Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1510915933:729557..729621TCONS_00001181-exon-sc0000007-1510915933:729557..729621Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1510915933:729203..729271TCONS_00001181-exon-sc0000007-1510915933:729203..729271Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1510915933:728124..728229TCONS_00001181-exon-sc0000007-1510915933:728124..728229Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1510915933:727726..727935TCONS_00001181-exon-sc0000007-1510915933:727726..727935Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1510915933:723905..724098TCONS_00001181-exon-sc0000007-1510915933:723905..724098Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1510915933:723532..723678TCONS_00001181-exon-sc0000007-1510915933:723532..723678Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1510915933:723051..723122TCONS_00001181-exon-sc0000007-1510915933:723051..723122Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1510915933:721829..722094TCONS_00001181-exon-sc0000007-1510915933:721829..722094Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1491911889:729557..729621TCONS_00001181-exon-sc0000007-1491911889:729557..729621Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1491911889:729203..729271TCONS_00001181-exon-sc0000007-1491911889:729203..729271Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1491911889:728124..728229TCONS_00001181-exon-sc0000007-1491911889:728124..728229Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1491911889:727726..727935TCONS_00001181-exon-sc0000007-1491911889:727726..727935Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1491911889:723905..724098TCONS_00001181-exon-sc0000007-1491911889:723905..724098Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1491911889:723532..723678TCONS_00001181-exon-sc0000007-1491911889:723532..723678Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1491911889:723051..723122TCONS_00001181-exon-sc0000007-1491911889:723051..723122Clytia hemisphaericaexon
TCONS_00001181-exon-sc0000007-1491911889:721829..722094TCONS_00001181-exon-sc0000007-1491911889:721829..722094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:721829..729621 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.8479	9.33491	34.3874	33.1759	7.77666	16.8782	17.6332	5.64991	29.2399	29.0721	20.6449	31.1062	27.901	32.7095	24.8826	22.5992	27.4546	31.9436	24.8573	27.3725	12.2844	9.42998	17.5248	10.2343	34.6497	10.8961	2.03588	14.0394	4.62196	9.63896
Blast
[Close]
BLAST of TCONS_00001181 vs. Swiss-Prot (Human)
Match: TCEA1 (Transcription elongation factor A protein 1 OS=Homo sapiens GN=TCEA1 PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 5.901e-74
Identity = 133/284 (46.83%), Postives = 183/284 (64.44%), Query Frame = 3 
Query:   84 DLLKRLKELPITLDILQKTRIGMTVNVVRKASNKDDIQTVAKGLIKSWXXXXXXXXXXXXXXXXXXXVNKQTSQEKESKPAPRDSRADSGG------------SYEVPPPKG---NDPIRIQCREMLVKSLKLEGRPEFNPAYIAAD-------IEEATYQMFKDTGSKYKNRIKSRVMNLRDKRNPALKQMVAEGEISPERFANMTAEEMATDELRAEREKMTKQAINEHQLATSAGTSTGQFKCHRCGKRKTSYSQVQTRSADEPMTTFVYCNECGNRWKFC 869
            DLLK LK +P+TL++LQ TRIGM+VN +RK S  +++ ++AK LIKSWKKLLD    +K+ +++K    K+ +   ++ P  R+    SG             +Y    P+    +D +R++CREML  +L    R   +   I AD       IEEA YQ  ++T  KYKNR++SR+ NL+D +NP L++ V  G I P+ FA MTAEEMA+DEL+  R+ +TK+AI EHQ+A + GT T  F C +C K+  +Y+QVQTRSADEPMTTFV CNECGNRWKFC
Sbjct:   26 DLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKK----KEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTSDSVRLKCREMLAAAL----RTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
The following BLAST results are available for this feature:
BLAST of TCONS_00001181 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TCEA15.901e-7446.83Transcription elongation factor A protein 1 OS=Hom... [more]
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