TCONS_00001176 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001176
Unique NameTCONS_00001176
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001176 ID=TCONS_00001176|Name=TCONS_00001176|organism=Clytia hemisphaerica|type=transcript|length=303bp
TTTTTTTCAGTGTAATGATGAGTTCATAAGATGTCGAAAGGAAACGAGTA
ATCGCCATGAATTTCACCGGTGTGTTAGACAGCTTCATCAATGTCTCTAT
GAAGAACGCAAAGAACAGCTTAGACAAAGAGCTCTCTGCATCAAACGGTG
CTATAATGGATTCGATGGATGCAGAAAATTTGACAACATCTTCAGATGTG
TTTATGGATATTTCAAGTGCAAGAAGACTTGTTAACTAGTATTTTGCTAT
CGTCCTTTGTAGCTAATATATGGAACAAAAAGAACGAAGATGGACATCCT
GAT
Run BLAST on NCBI

transcript from alignment at sc0000007:705047..705513-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001176 ID=TCONS_00001176|Name=TCONS_00001176|organism=Clytia hemisphaerica|type=transcript|length=467bp|location=Sequence derived from alignment at sc0000007:705047..705513- (Clytia hemisphaerica)
TTTTTTTCAGTGTAATGATGAGTTCATAAGATGTCGAAAGGAAACGAGTA ATCGCCATGAATTTCACCGGTGTGTTAGACAGCTTCATCAATGTCTCTAT GAAGAACGCAAAGAACAGCTTAGACAAAGAGCTCTCTGCATCAAACGGGT GGGACTTTTTGAATTTCCAGATAATCAGACGAATACAGAATATCTATCTA GCATAAACAAATGCTTTCTTTCATCGACCTTTCAAAAGAAGTGAGAGTTT CCAGTGTACATTTATTTTTGTGGTCTGATGTTGTTTTAGCTTTTTTTCAT TCATATTTTTAGTGCTATAATGGATTCGATGGATGCAGAAAATTTGACAA CATCTTCAGATGTGTTTATGGATATTTCAAGTGCAAGAAGACTTGTTAAC TAGTATTTTGCTATCGTCCTTTGTAGCTAATATATGGAACAAAAAGAACG AAGATGGACATCCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000638XLOC_000638Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001176-exon-sc0000007-1575043694:705366..705513TCONS_00001176-exon-sc0000007-1575043694:705366..705513Clytia hemisphaericaexon
TCONS_00001176-exon-sc0000007-1575043694:705047..705201TCONS_00001176-exon-sc0000007-1575043694:705047..705201Clytia hemisphaericaexon
TCONS_00001176-exon-sc0000007-1510915933:705366..705513TCONS_00001176-exon-sc0000007-1510915933:705366..705513Clytia hemisphaericaexon
TCONS_00001176-exon-sc0000007-1510915933:705047..705201TCONS_00001176-exon-sc0000007-1510915933:705047..705201Clytia hemisphaericaexon
TCONS_00001176-exon-sc0000007-1491911889:705366..705513TCONS_00001176-exon-sc0000007-1491911889:705366..705513Clytia hemisphaericaexon
TCONS_00001176-exon-sc0000007-1491911889:705047..705201TCONS_00001176-exon-sc0000007-1491911889:705047..705201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:705047..705513 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0.426915 0 0 0 0 0 0 0 1.04805 0 17.8011 17.8728 1.92691 6.85932 1.62967 1.56527 87.771 103.037 14.1625 15.133 21.5335 34.5229 25.0989 23.2271 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001176 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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