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TCONS_00001174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001174
Unique NameTCONS_00001174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001174 ID=TCONS_00001174|Name=TCONS_00001174|organism=Clytia hemisphaerica|type=transcript|length=691bp
CCATTTAACCTTTGGACTTTCATGATCAGTTTTTACCGATCAGGTTTTAT
TAATAATTGCACCTGATTGGAAAATGAATAGAAGAATAGAATCGAAAATA
TCaccgaaatttttaaactttttgacacTAGGTGTCGAAGCGAAAAATAT
CACCTGATTGTTAAATAGTTGAAAAGATATCTAGGCTATAAATTTGGTGG
ACTAGCACGATGTTTCagtatttcttattttttgaaataataattCTGAA
ACAAAATTCAATATGAAGTATTTGGTAGTTCTTTGCTTTCTTTTCTGTGT
AGCCTTTACTGCTGCAATTTTCATTGacgaagaagaagaagaaggttCTG
GCAAACAACCAACGTGTAGAGATGAGTTCATAGAATGCATGACAGAAGCA
CGTGGTTGGAAGGGGAAATATCGCTGTTTCAAAGAAAGACGGGCTTGTGG
AGAAGAATGCGACAAAAAGgctagagaaattttacaaaaatgtcgCGGAA
ATGGTGGAAAGCGATGCTTCGTTAAAGCCACTAAGTATCGGTGGAGCTGT
TTGAAAAGAATGTAATTATCCACAAATATGTATTTGAAAGATATCAGAAT
ATAGATAACTCATGTTTTAAGTAATTATGGATTGCTGACCATAACCCTTC
TCGTGTGTTGGGAGCCCGGGGGCAATCAATTTCTGAACGAC
Run BLAST on NCBI

protein sequence of TCONS_00001174-protein

>TCONS_00001174-protein ID=TCONS_00001174-protein|Name=TCONS_00001174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MKYLVVLCFLFCVAFTAAIFIDEEEEEGSGKQPTCRDEFIECMTEARGWK
GKYRCFKERRACGEECDKKAREILQKCRGNGGKRCFVKATKYRWSCLKRM
Run BLAST on NCBI

transcript from alignment at sc0000007:702702..704303-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001174 ID=TCONS_00001174|Name=TCONS_00001174|organism=Clytia hemisphaerica|type=transcript|length=1602bp|location=Sequence derived from alignment at sc0000007:702702..704303- (Clytia hemisphaerica)
CCATTTAACCTTTGGACTTTCATGATCAGTTTTTACCGATCAGGTTTTAT TAATAATTGCACCTGATTGGAAAATGAATAGAAGAATAGAATCGAAAATA TCACCGAAATTTTTAAACTTTTTGACACTAGGTGTCGAAGCGAAAAATAT CACCTGATTGTTAAATAGTTGAAAAGATATCTAGGCTATAAATTTGGTGG ACTAGCACGATGTTTCAGTATTTCTTATTTTTTGAAATAATAATTCTGAA ACAAAATTCAATATGAAGTATTTGGTAGTTCTTTGCTTTCTTTTCTGTGT AGCCTTTACTGCTGCAATTTTCATTGGTAAGTTGATATTGTCTTTTGTGC TTTCAATCAAGAGACAGTTTATCTTTTACAGAAACAAAATCCACTTCATA TTATTCTCCATTTTCAGACGAAGAAGAAGAAGAAGGTTCTGGCAAACAAC CAACGGTGAGTTTCTCCCTTTACCAATTTTTTTTCATATCATTGGTTGCT ATCAACTGGAATGTGTGCTGGAGGAAATGAGTCTAAATACGTGCATGATA TTTTTATGGCAGACTTCTGACTCTAAAAAGACGAAAGAAATTTTTATGTT TCCAGTATTGAAACATTGGTATTGTCGCCCTGATCCAGACCACATTACTC GAACTTTCAGAACCACTTTTTACTTGAACTTACTCGAACTTACTCGAACT TACTTACTCAAACAAGTAAAGTTCGAGTAAACAAATTACTCGAACTCCTC ACGATTTTTCAAAAACATAAGTTCGAGTAATTGGCTGAACTTCCTCGAAC TTTGGATTCTAAGTACTGTGTGTTAAAAGTTCGAGTAAAGTTCGAGAACT AATCGAACAAATCGAACTTTTCTTCAATCGAGCTTATCGAACTAATCGCT CGAACTCCTTATAAATTTTTGAAACTTTCTAAAAGTTCGAATAAAGGAAT TACTCGAACTTTACTTGTTCGAGTAAGCTCGAGTAGTTCGATTCTCGAAC TGTTCAAGTAATGGGGTCTGATCTGATCACGTTTAAATCCAGGATTTCTC CAATTAAGCATCGACACATGAATTTCTTCCCTTTGTTTTATAGTGTAGAG ATGAGTTCATAGAATGCATGACAGAAGCACGTGGTTGGAAGGGGAAATAT CGCTGTTTCAAAGAAAGACGGGCTTGTGGAGAAGAATGCGACAAAAAGGT AAACCGAATAATTTTTAGGCTATAGTACTACCTGCCGTTTTGAGTAGAAG TCTGCGATGTAGACTGAATACATTTTTGTCTAAAAATAAATTGTCTTGTA TAGTATTCACTTTCTGACCAAATTACTCTTCAGCTTTTAATACGAATAAG ATAATAATTAAAACTATTTTCATTTTTCAGGCTAGAGAAATTTTACAAAA ATGTCGCGGAAATGGTGGAAAGCGATGCTTCGTTAAAGCCACTAAGTATC GGTGGAGCTGTTTGAAAAGAATGTAATTATCCACAAATATGTATTTGAAA GATATCAGAATATAGATAACTCATGTTTTAAGTAATTATGGATTGCTGAC CATAACCCTTCTCGTGTGTTGGGAGCCCGGGGGCAATCAATTTCTGAACG AC

Coding sequence (CDS) from alignment at sc0000007:702702..704303-

>TCONS_00001174 ID=TCONS_00001174|Name=TCONS_00001174|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at sc0000007:702702..704303- (Clytia hemisphaerica)
GCTAGAGAAATTTTACAAAAATGTCGCGGAAATGGTGGAAAGCGATGCTT
CGTTAAAGCCACTAAGTATCGGTGGAGCTGTTTGAAAAGAATGTAATGTA
GAGATGAGTTCATAGAATGCATGACAGAAGCACGTGGTTGGAAGGGGAAA
TATCGCTGTTTCAAAGAAAGACGGGCTTGTGGAGAAGAATGCGACAAAAA
GACGAAGAAGAAGAAGAAGGTTCTGGCAAACAACCAACGATGAAGTATTT
GGTAGTTCTTTGCTTTCTTTTCTGTGTAGCCTTTACTGCTGCAATTTTCA
TTGGCTAGAGAAATTTTACAAAAATGTCGCGGAAATGGTGGAAAGCGATG
CTTCGTTAAAGCCACTAAGTATCGGTGGAGCTGTTTGAAAAGAATGTAAT
GTAGAGATGAGTTCATAGAATGCATGACAGAAGCACGTGGTTGGAAGGGG
AAATATCGCTGTTTCAAAGAAAGACGGGCTTGTGGAGAAGAATGCGACAA
AAAGACGAAGAAGAAGAAGAAGGTTCTGGCAAACAACCAACGATGAAGTA
TTTGGTAGTTCTTTGCTTTCTTTTCTGTGTAGCCTTTACTGCTGCAATTT
TCATTGGCTAGAGAAATTTTACAAAAATGTCGCGGAAATGGTGGAAAGCG
ATGCTTCGTTAAAGCCACTAAGTATCGGTGGAGCTGTTTGAAAAGAATGT
AATGTAGAGATGAGTTCATAGAATGCATGACAGAAGCACGTGGTTGGAAG
GGGAAATATCGCTGTTTCAAAGAAAGACGGGCTTGTGGAGAAGAATGCGA
CAAAAAGACGAAGAAGAAGAAGAAGGTTCTGGCAAACAACCAACGATGAA
GTATTTGGTAGTTCTTTGCTTTCTTTTCTGTGTAGCCTTTACTGCTGCAA
TTTTCATTGGCTAGAGAAATTTTACAAAAATGTCGCGGAAATGGTGGAAA
GCGATGCTTCGTTAAAGCCACTAAGTATCGGTGGAGCTGTTTGAAAAGAA
TGTAATGTAGAGATGAGTTCATAGAATGCATGACAGAAGCACGTGGTTGG
AAGGGGAAATATCGCTGTTTCAAAGAAAGACGGGCTTGTGGAGAAGAATG
CGACAAAAAGACGAAGAAGAAGAAGAAGGTTCTGGCAAACAACCAACGAT
GAAGTATTTGGTAGTTCTTTGCTTTCTTTTCTGTGTAGCCTTTACTGCTG
CAATTTTCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000638XLOC_000638Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001174-exon-sc0000007-1575043694:703978..704303TCONS_00001174-exon-sc0000007-1575043694:703978..704303Clytia hemisphaericaexon
TCONS_00001174-exon-sc0000007-1575043694:703849..703886TCONS_00001174-exon-sc0000007-1575043694:703849..703886Clytia hemisphaericaexon
TCONS_00001174-exon-sc0000007-1575043694:703106..703210TCONS_00001174-exon-sc0000007-1575043694:703106..703210Clytia hemisphaericaexon
TCONS_00001174-exon-sc0000007-1575043694:702702..702923TCONS_00001174-exon-sc0000007-1575043694:702702..702923Clytia hemisphaericaexon
TCONS_00001174-exon-sc0000007-1510915933:703978..704303TCONS_00001174-exon-sc0000007-1510915933:703978..704303Clytia hemisphaericaexon
TCONS_00001174-exon-sc0000007-1510915933:703849..703886TCONS_00001174-exon-sc0000007-1510915933:703849..703886Clytia hemisphaericaexon
TCONS_00001174-exon-sc0000007-1510915933:703106..703210TCONS_00001174-exon-sc0000007-1510915933:703106..703210Clytia hemisphaericaexon
TCONS_00001174-exon-sc0000007-1510915933:702702..702923TCONS_00001174-exon-sc0000007-1510915933:702702..702923Clytia hemisphaericaexon
TCONS_00001174-exon-sc0000007-1491911889:703978..704303TCONS_00001174-exon-sc0000007-1491911889:703978..704303Clytia hemisphaericaexon
TCONS_00001174-exon-sc0000007-1491911889:703849..703886TCONS_00001174-exon-sc0000007-1491911889:703849..703886Clytia hemisphaericaexon
TCONS_00001174-exon-sc0000007-1491911889:703106..703210TCONS_00001174-exon-sc0000007-1491911889:703106..703210Clytia hemisphaericaexon
TCONS_00001174-exon-sc0000007-1491911889:702702..702923TCONS_00001174-exon-sc0000007-1491911889:702702..702923Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001174-proteinTCONS_00001174-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:702702..704303 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.187713 0.21533 0 0.16307 0 0 0 0 0 0.153658 0 0.0980414 20.6073 15.9264 0 0 3.30631 3.58401 104.272 84.0428 35.2189 33.5488 9.73982 14.9628 3.02309 5.38403 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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