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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001174 ID=TCONS_00001174|Name=TCONS_00001174|organism=Clytia hemisphaerica|type=transcript|length=691bp CCATTTAACCTTTGGACTTTCATGATCAGTTTTTACCGATCAGGTTTTAT TAATAATTGCACCTGATTGGAAAATGAATAGAAGAATAGAATCGAAAATA TCaccgaaatttttaaactttttgacacTAGGTGTCGAAGCGAAAAATAT CACCTGATTGTTAAATAGTTGAAAAGATATCTAGGCTATAAATTTGGTGG ACTAGCACGATGTTTCagtatttcttattttttgaaataataattCTGAA ACAAAATTCAATATGAAGTATTTGGTAGTTCTTTGCTTTCTTTTCTGTGT AGCCTTTACTGCTGCAATTTTCATTGacgaagaagaagaagaaggttCTG GCAAACAACCAACGTGTAGAGATGAGTTCATAGAATGCATGACAGAAGCA CGTGGTTGGAAGGGGAAATATCGCTGTTTCAAAGAAAGACGGGCTTGTGG AGAAGAATGCGACAAAAAGgctagagaaattttacaaaaatgtcgCGGAA ATGGTGGAAAGCGATGCTTCGTTAAAGCCACTAAGTATCGGTGGAGCTGT TTGAAAAGAATGTAATTATCCACAAATATGTATTTGAAAGATATCAGAAT ATAGATAACTCATGTTTTAAGTAATTATGGATTGCTGACCATAACCCTTC TCGTGTGTTGGGAGCCCGGGGGCAATCAATTTCTGAACGAC Run BLAST on NCBI protein sequence of TCONS_00001174-protein >TCONS_00001174-protein ID=TCONS_00001174-protein|Name=TCONS_00001174-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MKYLVVLCFLFCVAFTAAIFIDEEEEEGSGKQPTCRDEFIECMTEARGWK GKYRCFKERRACGEECDKKAREILQKCRGNGGKRCFVKATKYRWSCLKRM Run BLAST on NCBI transcript from alignment at sc0000007:702702..704303- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001174 ID=TCONS_00001174|Name=TCONS_00001174|organism=Clytia hemisphaerica|type=transcript|length=1602bp|location=Sequence derived from alignment at sc0000007:702702..704303- (Clytia hemisphaerica) CCATTTAACCTTTGGACTTTCATGATCAGTTTTTACCGATCAGGTTTTAT
TAATAATTGCACCTGATTGGAAAATGAATAGAAGAATAGAATCGAAAATA
TCACCGAAATTTTTAAACTTTTTGACACTAGGTGTCGAAGCGAAAAATAT
CACCTGATTGTTAAATAGTTGAAAAGATATCTAGGCTATAAATTTGGTGG
ACTAGCACGATGTTTCAGTATTTCTTATTTTTTGAAATAATAATTCTGAA
ACAAAATTCAATATGAAGTATTTGGTAGTTCTTTGCTTTCTTTTCTGTGT
AGCCTTTACTGCTGCAATTTTCATTGGTAAGTTGATATTGTCTTTTGTGC
TTTCAATCAAGAGACAGTTTATCTTTTACAGAAACAAAATCCACTTCATA
TTATTCTCCATTTTCAGACGAAGAAGAAGAAGAAGGTTCTGGCAAACAAC
CAACGGTGAGTTTCTCCCTTTACCAATTTTTTTTCATATCATTGGTTGCT
ATCAACTGGAATGTGTGCTGGAGGAAATGAGTCTAAATACGTGCATGATA
TTTTTATGGCAGACTTCTGACTCTAAAAAGACGAAAGAAATTTTTATGTT
TCCAGTATTGAAACATTGGTATTGTCGCCCTGATCCAGACCACATTACTC
GAACTTTCAGAACCACTTTTTACTTGAACTTACTCGAACTTACTCGAACT
TACTTACTCAAACAAGTAAAGTTCGAGTAAACAAATTACTCGAACTCCTC
ACGATTTTTCAAAAACATAAGTTCGAGTAATTGGCTGAACTTCCTCGAAC
TTTGGATTCTAAGTACTGTGTGTTAAAAGTTCGAGTAAAGTTCGAGAACT
AATCGAACAAATCGAACTTTTCTTCAATCGAGCTTATCGAACTAATCGCT
CGAACTCCTTATAAATTTTTGAAACTTTCTAAAAGTTCGAATAAAGGAAT
TACTCGAACTTTACTTGTTCGAGTAAGCTCGAGTAGTTCGATTCTCGAAC
TGTTCAAGTAATGGGGTCTGATCTGATCACGTTTAAATCCAGGATTTCTC
CAATTAAGCATCGACACATGAATTTCTTCCCTTTGTTTTATAGTGTAGAG
ATGAGTTCATAGAATGCATGACAGAAGCACGTGGTTGGAAGGGGAAATAT
CGCTGTTTCAAAGAAAGACGGGCTTGTGGAGAAGAATGCGACAAAAAGGT
AAACCGAATAATTTTTAGGCTATAGTACTACCTGCCGTTTTGAGTAGAAG
TCTGCGATGTAGACTGAATACATTTTTGTCTAAAAATAAATTGTCTTGTA
TAGTATTCACTTTCTGACCAAATTACTCTTCAGCTTTTAATACGAATAAG
ATAATAATTAAAACTATTTTCATTTTTCAGGCTAGAGAAATTTTACAAAA
ATGTCGCGGAAATGGTGGAAAGCGATGCTTCGTTAAAGCCACTAAGTATC
GGTGGAGCTGTTTGAAAAGAATGTAATTATCCACAAATATGTATTTGAAA
GATATCAGAATATAGATAACTCATGTTTTAAGTAATTATGGATTGCTGAC
CATAACCCTTCTCGTGTGTTGGGAGCCCGGGGGCAATCAATTTCTGAACG
AC Coding sequence (CDS) from alignment at sc0000007:702702..704303- >TCONS_00001174 ID=TCONS_00001174|Name=TCONS_00001174|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at sc0000007:702702..704303- (Clytia hemisphaerica) GCTAGAGAAATTTTACAAAAATGTCGCGGAAATGGTGGAAAGCGATGCTT CGTTAAAGCCACTAAGTATCGGTGGAGCTGTTTGAAAAGAATGTAATGTA GAGATGAGTTCATAGAATGCATGACAGAAGCACGTGGTTGGAAGGGGAAA TATCGCTGTTTCAAAGAAAGACGGGCTTGTGGAGAAGAATGCGACAAAAA GACGAAGAAGAAGAAGAAGGTTCTGGCAAACAACCAACGATGAAGTATTT GGTAGTTCTTTGCTTTCTTTTCTGTGTAGCCTTTACTGCTGCAATTTTCA TTGGCTAGAGAAATTTTACAAAAATGTCGCGGAAATGGTGGAAAGCGATG CTTCGTTAAAGCCACTAAGTATCGGTGGAGCTGTTTGAAAAGAATGTAAT GTAGAGATGAGTTCATAGAATGCATGACAGAAGCACGTGGTTGGAAGGGG AAATATCGCTGTTTCAAAGAAAGACGGGCTTGTGGAGAAGAATGCGACAA AAAGACGAAGAAGAAGAAGAAGGTTCTGGCAAACAACCAACGATGAAGTA TTTGGTAGTTCTTTGCTTTCTTTTCTGTGTAGCCTTTACTGCTGCAATTT TCATTGGCTAGAGAAATTTTACAAAAATGTCGCGGAAATGGTGGAAAGCG ATGCTTCGTTAAAGCCACTAAGTATCGGTGGAGCTGTTTGAAAAGAATGT AATGTAGAGATGAGTTCATAGAATGCATGACAGAAGCACGTGGTTGGAAG GGGAAATATCGCTGTTTCAAAGAAAGACGGGCTTGTGGAGAAGAATGCGA CAAAAAGACGAAGAAGAAGAAGAAGGTTCTGGCAAACAACCAACGATGAA GTATTTGGTAGTTCTTTGCTTTCTTTTCTGTGTAGCCTTTACTGCTGCAA TTTTCATTGGCTAGAGAAATTTTACAAAAATGTCGCGGAAATGGTGGAAA GCGATGCTTCGTTAAAGCCACTAAGTATCGGTGGAGCTGTTTGAAAAGAA TGTAATGTAGAGATGAGTTCATAGAATGCATGACAGAAGCACGTGGTTGG AAGGGGAAATATCGCTGTTTCAAAGAAAGACGGGCTTGTGGAGAAGAATG CGACAAAAAGACGAAGAAGAAGAAGAAGGTTCTGGCAAACAACCAACGAT GAAGTATTTGGTAGTTCTTTGCTTTCTTTTCTGTGTAGCCTTTACTGCTG CAATTTTCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001174-exon-sc0000007-1575043694:703978..704303 | TCONS_00001174-exon-sc0000007-1575043694:703978..704303 | Clytia hemisphaerica | exon |
TCONS_00001174-exon-sc0000007-1575043694:703849..703886 | TCONS_00001174-exon-sc0000007-1575043694:703849..703886 | Clytia hemisphaerica | exon |
TCONS_00001174-exon-sc0000007-1575043694:703106..703210 | TCONS_00001174-exon-sc0000007-1575043694:703106..703210 | Clytia hemisphaerica | exon |
TCONS_00001174-exon-sc0000007-1575043694:702702..702923 | TCONS_00001174-exon-sc0000007-1575043694:702702..702923 | Clytia hemisphaerica | exon |
TCONS_00001174-exon-sc0000007-1510915933:703978..704303 | TCONS_00001174-exon-sc0000007-1510915933:703978..704303 | Clytia hemisphaerica | exon |
TCONS_00001174-exon-sc0000007-1510915933:703849..703886 | TCONS_00001174-exon-sc0000007-1510915933:703849..703886 | Clytia hemisphaerica | exon |
TCONS_00001174-exon-sc0000007-1510915933:703106..703210 | TCONS_00001174-exon-sc0000007-1510915933:703106..703210 | Clytia hemisphaerica | exon |
TCONS_00001174-exon-sc0000007-1510915933:702702..702923 | TCONS_00001174-exon-sc0000007-1510915933:702702..702923 | Clytia hemisphaerica | exon |
TCONS_00001174-exon-sc0000007-1491911889:703978..704303 | TCONS_00001174-exon-sc0000007-1491911889:703978..704303 | Clytia hemisphaerica | exon |
TCONS_00001174-exon-sc0000007-1491911889:703849..703886 | TCONS_00001174-exon-sc0000007-1491911889:703849..703886 | Clytia hemisphaerica | exon |
TCONS_00001174-exon-sc0000007-1491911889:703106..703210 | TCONS_00001174-exon-sc0000007-1491911889:703106..703210 | Clytia hemisphaerica | exon |
TCONS_00001174-exon-sc0000007-1491911889:702702..702923 | TCONS_00001174-exon-sc0000007-1491911889:702702..702923 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000007 | supercontig | sc0000007:702702..704303 - |
Blast
The following BLAST results are available for this feature:
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