TCONS_00001170 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001170
Unique NameTCONS_00001170
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length961

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001170 ID=TCONS_00001170|Name=TCONS_00001170|organism=Clytia hemisphaerica|type=transcript|length=961bp
TACAGTCGAAGAGTTCCCAACACGTCACGACGTTTACGAACATGGCTTAC
TTTCAGTTCTCGCACACATGGAATTCGAGTTTGGCGCTTTTTTTGGCACT
TACATGGCAGTGTCCTTTTTGTGGTACGTCAACCATACTATATTACATCT
TTTCCATACCATCGACATTGGCGCATTGTATTTGCAGAAAATCTTTCTTG
CATTCCTCTGCCTTGCTCCCATTCAAAACAACATGATGGTAAAGACAGCC
AACAAGGGATCCGATGCTGAAAAACAATTAGCCTTGCAATGGAGCAGTGG
AACTGTTTTCGCTGCAAGCTTCTCACAAGTTCTTATGGTGGCCTGGGGAT
TCTACCGCAAAGGGAAACTCTTCCATCGCTGGGCTACTTGTGAGAGTACA
TTCGACACTTTGATGAATCGTAAACAATCCATGTATATTCGTTTCAAAGT
CGCAGCCATTCCCTTTTGGTCATTTATCGgtattttttcatcatttgcAT
CCGGCGACATAGGATTTATAATCACAATTGTATGCATCATCTCCACTATC
CTCTCATTAATCCTGCTCAAATTTATCTTCATGAATCACGTGAGTAAAAA
GGACAAATTCCTTACCAACGGTAAAACAATATCAAGAGATCAGTCGATCG
AATCACTCGGTGACATTGAACTACGGAACAGTATGGCGGAGGAGATAGCG
GATGGGAAAATGTACGAGGATGAAAATGAGATGGAAAGAGAAGTGATGGA
AGacacagaaaagaaaaattgaagaaacaaaaaaatgaggAACGATAGGA
AAAAGACATGGCTCAAAACCATTCAGAAAATGGTAGATTACGTCATCACC
GATAGAGACAATCATTCTAAAATGAACGGTATTAAGTTTAAGGTGCAGGG
ATTTTAAACAGATAGTTTGATATAAttatattatcaaaaaaattcgGAAA
ATGTAATAAAG
Run BLAST on NCBI

protein sequence of TCONS_00001170-protein

>TCONS_00001170-protein ID=TCONS_00001170-protein|Name=TCONS_00001170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
TVEEFPTRHDVYEHGLLSVLAHMEFEFGAFFGTYMAVSFLWYVNHTILHL
FHTIDIGALYLQKIFLAFLCLAPIQNNMMVKTANKGSDAEKQLALQWSSG
TVFAASFSQVLMVAWGFYRKGKLFHRWATCESTFDTLMNRKQSMYIRFKV
AAIPFWSFIGIFSSFASGDIGFIITIVCIISTILSLILLKFIFMNHVSKK
DKFLTNGKTISRDQSIESLGDIELRNSMAEEIADGKMYEDENEMEREVME
DTEKKN
Run BLAST on NCBI

transcript from alignment at sc0000007:654647..658945-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001170 ID=TCONS_00001170|Name=TCONS_00001170|organism=Clytia hemisphaerica|type=transcript|length=4299bp|location=Sequence derived from alignment at sc0000007:654647..658945- (Clytia hemisphaerica)
TACAGTCGAAGAGTTCCCAACACGTCACGACGTTTACGAACATGGCTTAC
TTTCAGTTCTCGCACACATGGAATTCGAGTTTGGCGCTTTTTTTGGCACT
TACATGGCAGTGTCCTTTTTGTGGTACGTCAACCATACTATATTACATCT
TTTTCATACCATCGACATTGGCGCATTGTATTTGCAGAAAATCTTTCTTG
CATTTCTTTGTTTTGCACCCATATTGAACAATATGATGGTGGAGTTTGAA
TTCGGTCATGGTACAGAATCAGAGAAGCGAACAGCCTTGCAATGGAGCAG
TGGAATGTTATTTGCCGCAAGTTTAACGCAACTCCTGATGGTTATTTGGG
GATCAATGCGAAAAGACAAACTTCTACACCGGTGGGCAACTCATGAAGAC
AAGAACCATAAGAATAAGATGAATCGAAAACAATTCATGTACATTCGATT
GAAAATCATTGTTGTTCCTTTCTGGACTCTTGTTGGTATCTTCAGCTCAT
ATGCTTCTGGTAACGCAGCTATGATCATCACCTGTGCGTGTATAGCTGGT
ACCCTACTCTCCTTTATCATACTCAAGTTTGTCTTCATAAATCACATCAA
CAAACCAGCTATATTCACCACCCAAAACAGTAGTTCCGGTAAGCATTTAT
CCCTCGGTGACATTGAACTACGGAACAGTATGGCGGAGGAGATAGCGGAT
GGGAAAGTGTACGAGGATGAAAATGAGATGGAGAGAGAAGTTCTGGAAGA
GGCGGAAAAGAAAGAAATTAAAGACGAACTAAAGGAAGAACGACAGGAAA
ATGATATGGCTGAAACTGTTCTAAATGAAGAATCAAATGAGGACACTATT
ATGTAATATTGAAAAAGAATTTTAGTTTTATCTACTAAGAATTTCTATTG
ATTATTGATAGGATCAAAACATAATCATTTAATCCTTAACTTAGATTTAT
TTCTGGCTGGCCGTAGTAGTTCCGCTCTTGTCTGGAAGCTTTCTCCTTTG
TGTATATCATAAGTTAAAAAGGATTTGCTCAGTTTTTGAACACGCTACCA
CGTACTCTTCTTAGCATTGGTTTAAGATTTAGTCTCATGATCAAAAAGTG
AGCAAAACAAACTAATTTCTAAAAAACAATGTGAAAGAAACAAAAGGCTT
CCAGTTTTTTTATACGGACTATAGTTCTAAACAATCTAAACATAAAATAT
TTTTGTAAATATTGGCTTTATCAACAATAAATTTTTCACGGAAGGACCAT
CTTTCTAGTTTAGTAGATTTGTGAAATCTCTAGGGTGTTAAAGGTTTTGT
TCCTAAATAAGAGTGATATCGTTTGCTTACTCATCAATTTCAATTCACAA
GCTTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTAACCTATGTTTGT
TCGTCCGTTCGTCCGTTCGTCCGTCCGTTCGTCTGTTACCAACTTTTCTC
AGGATTGAATCATAGGAATCTTTTGATTTTTGGTATAAAGGTGCAAAATG
GTGGTGGACAAAATGTGATGCCCGATTTTCGAAAAAAAAATTTTGGGGGC
AAATTTAGGCCAAAAAACGGCTAAAAAACGGGTTTTTTGTACTTTGTATT
TTTGATGAGATAGATGTATTTCTTGCTCACGAAGTCTTGAATATGAAAGA
ATATTTCAAGGGCATGAAATTTTGGTTTCTAAACGTTTTTTTATAAGAAA
CAAACGACTAATTTTAATAGATCGTCACTATTTGTGTTCTGAATGATTGT
TTAACGGTCATGCTCACGTAGATATCAATTATATGTGTTAAATGCATAAC
CAGGTAGGTCCATAAAAGTATCACTTGTTCACATTGGATTGACACGGATG
TGGAGCAAGATTGGTCAGAAAATAAACATTACAACATAACAATAGGCAGA
CACTGTCCTTATATGAAATATGTGCCTGATATGAAACGGAAACGCTTATC
TAAAAATAAAACCTTTAACCGTTAAAATATTTTATAATAATGGTCTTTTA
TTACTAATTATTTACTCATATTTTTGTGTAAAAACAGCAATTTTTGGCTT
TCTACTTAGTTGATTCTTGCTTACTCAAACACTTCTTACTAACATCCTGA
AAGTTCGGATATATTAGCGATGCCCATTAAGAAAAATAATCGATTACTCA
ATGTTATAACTTGCTCGAACTTACATTCTCAGCTTTCCGGTTATTTCAAA
ATATCTTCTCCCATGATCACGTTAAGCAAGTTCAATATCTAATTAATTTG
CAAATTAATGACACAAGGTTAATATAAATACTGCAACACTAACTTCTCTC
GACATTATTCGATCAACTCATATTTATCATATGGTCGTGCTGAACTGGTT
TTACAAACAAGCAAGAAATCAAGATGGTAGCTGCAGGCGCAATCAATGTG
TCTTTCGAGCCTGAAGAAGAACACCATCACACACGGGAGTTATCAAAGGA
TGGCGACCTCAAACACCTTCAAGAACATTACGATGAAATTACAGACACAA
AACTCCCTGAAAATCTACACCGTGGTGACATCACAACTGTCAACCGTTTC
CTTGGTTACCATGATGCCATGATGGCTACCTGTGGGACCTTTCTCGTCTT
ACCATTACGTAACCTTAATAATTTTGTGAAAACCGAGATTTATGACGAGT
TGGAGAAGAACCATGAATTGCCACATGACCCCGTTGTCGTCGACGATTTG
GCTGAATATATAGATGCTACAAAAACTAAACTAATAATGTTCTTCCTTGG
TTTTCTCATTATTTGCACGATTTGGGAGACCAACATCATTCGAACAAACG
TCATCAAAAGATACGATGATTTTATGGTCATGCTTGGACTCTTCCAGATG
GCAGCCATTGTGGTTCTCCCATTCTCCATCGCTTTGAATGGTGCATACCC
AAGAGAGGATGTGACTGTGCTCCTCACCATAACCATTTTGATCATTATCA
ACATTTTCGAACTGATCATGATTTTGTACGGATTCTACTGTCCAAGGTTG
CTCAATATGGCCATGAAAGACTGGAGCAATAAGGAGGTCCGACGGTTCAT
GCTGAGAATGTGCATTAAGCCAATCGTTGAAATAGTTTTAGTGGGCGTTG
CTGGCGCATTTAGCTTGTTGAGGTATGAAATCTCATGGGTTTTACTGGCT
CTTTTGATCGCCGTGCCCTTGTTTCGAAGATTGGCTTTCTACTACGAGCG
ACATCACCACTCAAATGCCAAAGTTGAGAAATGCAGATTCTACTATTTCT
TCACGAAAGGACAGATCAGTAAAGAAAGAGTAGAAGCATTTTCGGACGCA
GCGATCGCAATCATTGCATGTGTATTGATTTTGGACATCACAGTTGAAGA
GTTCCCAACAGCTCACGACGTGAAAGAAAAAGGCTTGATTTCCGTACTCT
CTCACTTAAGAATTGAAATAGGCGCCTTCTTCGGCACTTATTTGGCAGTT
TCTTTGCTGTGGTACGTCAACCATACTGTATTACATCTTTTCCATACCAT
CGACATTGGCGCATTGTATTTGCAGAAAATCTTTCTTGCATTCCTCTGCC
TTGCTCCCATTCAAAACAACATGATGGTAAAGACAGCCAACAAGGGATCC
GATGCTGAAAAACAATTAGCCTTGCAATGGAGCAGTGGAACTGTTTTCGC
TGCAAGCTTCTCACAAGTTCTTATGGTGGCCTGGGGATTCTACCGCAAAG
GGAAACTCTTCCATCGCTGGGCTACTTGTGAGAGTACATTCGACACTTTG
ATGAATCGTAAACAATCCATGTATATTCGTTTCAAAGTCGCAGCCATTCC
CTTTTGGTCATTTATCGGTATTTTTTCATCATTTGCATCCGGCGACATAG
GATTTATAATCACAATTGTATGCATCATCTCCACTATCCTCTCATTAATC
CTGCTCAAATTTATCTTCATGAATCACGTGAGTAAAAAGGACAAATTCCT
TACCAACGGTAAAACAATATCAAGAGATCAGTCGATCGAATCACTCGGTG
ACATTGAACTACGGAACAGTATGGCGGAGGAGATAGCGGATGGGAAAATG
TACGAGGATGAAAATGAGATGGAAAGAGAAGTGATGGAAGACACAGAAAA
GAAAAATTGAAGAAACAAAAAAATGAGGAACGATAGGAAAAAGACATGGC
TCAAAACCATTCAGAAAATGGTAGATTACGTCATCACCGATAGAGACAAT
CATTCTAAAATGAACGGTATTAAGTTTAAGGTGCAGGGATTTTAAACAGA
TAGTTTGATATAATTATATTATCAAAAAAATTCGGAAAATGTAATAAAG

Coding sequence (CDS) from alignment at sc0000007:654647..658945-

>TCONS_00001170 ID=TCONS_00001170|Name=TCONS_00001170|organism=Clytia hemisphaerica|type=CDS|length=1542bp|location=Sequence derived from alignment at sc0000007:654647..658945- (Clytia hemisphaerica)
ATCTTTTCCATACCATCGACATTGGCGCATTGTATTTGCAGAAAATCTTT
CTTGCATTCCTCTGCCTTGCTCCCATTCAAAACAACATGATGGTAAAGAC
AGCCAACAAGGGATCCGATGCTGAAAAACAATTAGCCTTGCAATGGAGCA
GTGGAACTGTTTTCGCTGCAAGCTTCTCACAAGTTCTTATGGTGGCCTGG
GGATTCTACCGCAAAGGGAAACTCTTCCATCGCTGGGCTACTTGTGAGAG
TACATTCGACACTTTGATGAATCGTAAACAATCCATGTATATTCGTTTCA
AAGTCGCAGCCATTCCCTTTTGGTCATTTATCGGTATTTTTTCATCATTT
GCATCCGGCGACATAGGATTTATAATCACAATTGTATGCATCATCTCCAC
TATCCTCTCATTAATCCTGCTCAAATTTATCTTCATGAATCACGTGAGTA
AAAAGGACAAATTCCTTACCAACGGTAAAACAATATCAAGAGATCAGTCG
ATCGAATCACTCGGTGACATTGAACTACGGAACAGTATGGCGGAGGAGAT
AGCGGATGGGAAAATGTACGAGGATGAAAATGAGATGGAAAGAGAAGTGA
TGGAAGACACAGAAAAGAAAAATTGAACAGTCGAAGAGTTCCCAACACGT
CACGACGTTTACGAACATGGCTTACTTTCAGTTCTCGCACACATGGAATT
CGAGTTTGGCGCTTTTTTTGGCACTTACATGGCAGTGTCCTTTTTGTGGT
ACGTCAACCATACTATATTACATCTTTTCCATACCATCGACATTGGCGCA
TTGTATTTGCAGAAAATCTTTCTTGCATTCCTCTGCCTTGCTCCCATTCA
AAACAACATGATGGTAAAGACAGCCAACAAGGGATCCGATGCTGAAAAAC
AATTAGCCTTGCAATGGAGCAGTGGAACTGTTTTCGCTGCAAGCTTCTCA
CAAGTTCTTATGGTGGCCTGGGGATTCTACCGCAAAGGGAAACTCTTCCA
TCGCTGGGCTACTTGTGAGAGTACATTCGACACTTTGATGAATCGTAAAC
AATCCATGTATATTCGTTTCAAAGTCGCAGCCATTCCCTTTTGGTCATTT
ATCGGTATTTTTTCATCATTTGCATCCGGCGACATAGGATTTATAATCAC
AATTGTATGCATCATCTCCACTATCCTCTCATTAATCCTGCTCAAATTTA
TCTTCATGAATCACGTGAGTAAAAAGGACAAATTCCTTACCAACGGTAAA
ACAATATCAAGAGATCAGTCGATCGAATCACTCGGTGACATTGAACTACG
GAACAGTATGGCGGAGGAGATAGCGGATGGGAAAATGTACGAGGATGAAA
ATGAGATGGAAAGAGAAGTGATGGAAGACACAGAAAAGAAAAATTGAACA
GTCGAAGAGTTCCCAACACGTCACGACGTTTACGAACATGGCTTACTTTC
AGTTCTCGCACACATGGAATTCGAGTTTGGCGCTTTTTTTGGCACTTACA
TGGCAGTGTCCTTTTTGTGGTACGTCAACCATACTATATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000635XLOC_000635Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001170-proteinTCONS_00001170-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001170-exon-sc0000007-1575043694:658800..658945TCONS_00001170-exon-sc0000007-1575043694:658800..658945Clytia hemisphaericaexon
TCONS_00001170-exon-sc0000007-1575043694:654647..655461TCONS_00001170-exon-sc0000007-1575043694:654647..655461Clytia hemisphaericaexon
TCONS_00001170-exon-sc0000007-1510915933:658800..658945TCONS_00001170-exon-sc0000007-1510915933:658800..658945Clytia hemisphaericaexon
TCONS_00001170-exon-sc0000007-1510915933:654647..655461TCONS_00001170-exon-sc0000007-1510915933:654647..655461Clytia hemisphaericaexon
TCONS_00001170-exon-sc0000007-1491911889:658800..658945TCONS_00001170-exon-sc0000007-1491911889:658800..658945Clytia hemisphaericaexon
TCONS_00001170-exon-sc0000007-1491911889:654647..655461TCONS_00001170-exon-sc0000007-1491911889:654647..655461Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:654647..658945 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0744564	0	0	0	1.57379	2.74901	3.3933	1.73393	1.364	13.6198	0	0	0.119701	0	0.0312466	0	0	0	0	0	0	0	0	0	1.27531	0.0745455	0.0624143	0.0768043
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001170 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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