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TCONS_00001169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001169
Unique NameTCONS_00001169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001169 ID=TCONS_00001169|Name=TCONS_00001169|organism=Clytia hemisphaerica|type=transcript|length=2482bp
TAATTATTTACTCATATTTTTGTgtaaaaacagcaatttttggCTTTCTA
CTTAGTTGATTCTTGCTTACTCAAACACTTCTTACTAACATCCTGAAAGT
TCGGATATATTAGCGATGCCCATTAAGAAAAATAATCGATTACTCAATGT
TATAACTTGCTCGAACTTACATTCTCAGCTTTCCGgttatttcaaaatat
cttctCCCATGATCACGTTAAGCAAGTTCAATATCTAATTAATTTGCAAA
TTAATGACACAAGGTTAATATAAATACTGCAACACTAACTTCTCTCGACA
TTATTCGATCAACTCATATTTATCATATGGTCGTGCTGAACTGGTTTTAC
AAACAAGCAAGAAATCAAGATGGTAGCTGCAGGCGCAATCAATGTGTCTT
TCGAGCCTGAAGAAGAACACCATCACACACGGGAGTTATCAAAGGATGGC
GACCTCAAACACCTTCAAGAACATTACGATGAAATTACAGACACAAAACT
CCCTGAAAATCTACACCGTGGTGACATCACAACTGTCAACCGTTTCCTTG
GTTACCATGATGCCATGATGGCTACCTGTGGGACCTTTCTCGTCTTACCA
TTACGTAACCTTAATAATTTTGTGAAAACCGAGATTTATGACGAGTTGGA
GAAGAACCATGAATTGCCACATGACCCCGTTGTCGTCGACGATTTGGCTG
AATATATAGATGCTACAAAAACTAAACTAATAATGTTCTTCCTTGGTTTT
CTCATTATTTGCACGATTTGGGAGACCAACATCATTCGAACAAACGTCAT
CAAAAGATACGATGATTTTATGGTCATGCTTGGACTCTTCCAGATGGCAG
CCATTGTGGTTCTCCCATTCTCCATCGCTTTGAATGGTGCATACCCAAGA
GAGGATGTGACTGTGCTCCTCACCATAACCATTTTGATcattatcaacat
tttcgaacTGATCATGATTTTGTACGGATTCTACTGTCCAAGGTTGCTCA
ATATGGCCATGAAAGACTGGAGCAATAAGGAGGTCCGACGGTTCATGCTG
AGAATGTGCATTAAGCCAATCGTTGAAATAGTTTTAGTGGGCGTTGCTGG
CGCATTTAGCTTGTTGAGGTATGAAATCTCATGGGTTTTACTGGCTCTTT
TGATCGCCGTGCCCTTGTTTCGAAGATTGGCTTTCTACTACGAGCGACAT
CACCACTCAAATGCCAAAGTTGAGAAATGCAGATTCTACTATTTCTTCAC
GAAAGGACAGATCAGTAAAGAAAGAGTAGAAGCATTTTCGGACGCAGCGA
TCGCAATCATTGCATGTGTATTGATTTTGGACATCACAGTTGAAGAGTTC
CCAACAGCTCACGACGTGAAAGAAAAAGGCTTGATTTCCGTACTCTCTCA
CTTAAGAATTGAAATAGGCGCCTTCTTCGGCACTTATTTGGCAGTTTCTT
TGCTGTGGTACGTCAACCATACTGTATTACATCTTTTCCATACCATCGAC
ATTGGCGCATTGTATTTGCAGAAAATCTTTCTTGCATTCCTCTGCCTTGC
TCCCATTCAAAACAACATGATGGTAAAGACAGCCAACAAGGGATCCGATG
CTGAAAAACAATTAGCCTTGCAATGGAGCAGTGGAACTGTTTTCGCTGCA
AGCTTCTCACAAGTTCTTATGGTGGCCTGGGGATTCTACCGCAAAGGGAA
ACTCTTCCATCGCTGGGCTACTTGTGAGAGTACATTCGACACTTTGATGA
ATCGTAAACAATCCATGTATATTCGTTTCAAAGTCGCAGCCATTCCCTTT
TGGTCATTTATCGgtattttttcatcatttgcATCCGGCGACATAGGATT
TATAATCACAATTGTATGCATCATCTCCACTATCCTCTCATTAATCCTGC
TCAAATTTATCTTCATGAATCACGTGAGTAAAAAGGACAAATTCCTTACC
AACGGTAAAACAATATCAAGAGATCAGTCGATCGAATCACTCGGTGACAT
TGAACTACGGAACAGTATGGCGGAGGAGATAGCGGATGGGAAAATGTACG
AGGATGAAAATGAGATGGAAAGAGAAGTGATGGAAGacacagaaaagaaa
aattgaagaaacaaaaaaatgaggAACGATAGGAAAAAGACATGGCTCAA
AACCATTCAGAAAATGGTAGATTACGTCATCACCGATAGAGACAATCATT
CTAAAATGAACGGTATTAAGTTTAAGGTGCAGGGATTTTAAACAGATAGT
TTGATATAAttatattatcaaaaaaattcgGAAAATGTAATAAAGTTTAG
AGTGATGACACATATCATTGataaaatctttgtttggttgGAAAACTatg
aacacccctgtctcaattacCCGGAGAATACCTAAACCAGTAGGGATGAC
ATTAAGATGCTGAATGCCGATAAGGGGGATTcttgttttgaatttcaatt
gttATTGAGGAAGACCTAAAACATATTCTGAT
Run BLAST on NCBI

transcript from alignment at sc0000007:654460..656941-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001169 ID=TCONS_00001169|Name=TCONS_00001169|organism=Clytia hemisphaerica|type=transcript|length=2482bp|location=Sequence derived from alignment at sc0000007:654460..656941- (Clytia hemisphaerica)
TAATTATTTACTCATATTTTTGTGTAAAAACAGCAATTTTTGGCTTTCTA CTTAGTTGATTCTTGCTTACTCAAACACTTCTTACTAACATCCTGAAAGT TCGGATATATTAGCGATGCCCATTAAGAAAAATAATCGATTACTCAATGT TATAACTTGCTCGAACTTACATTCTCAGCTTTCCGGTTATTTCAAAATAT CTTCTCCCATGATCACGTTAAGCAAGTTCAATATCTAATTAATTTGCAAA TTAATGACACAAGGTTAATATAAATACTGCAACACTAACTTCTCTCGACA TTATTCGATCAACTCATATTTATCATATGGTCGTGCTGAACTGGTTTTAC AAACAAGCAAGAAATCAAGATGGTAGCTGCAGGCGCAATCAATGTGTCTT TCGAGCCTGAAGAAGAACACCATCACACACGGGAGTTATCAAAGGATGGC GACCTCAAACACCTTCAAGAACATTACGATGAAATTACAGACACAAAACT CCCTGAAAATCTACACCGTGGTGACATCACAACTGTCAACCGTTTCCTTG GTTACCATGATGCCATGATGGCTACCTGTGGGACCTTTCTCGTCTTACCA TTACGTAACCTTAATAATTTTGTGAAAACCGAGATTTATGACGAGTTGGA GAAGAACCATGAATTGCCACATGACCCCGTTGTCGTCGACGATTTGGCTG AATATATAGATGCTACAAAAACTAAACTAATAATGTTCTTCCTTGGTTTT CTCATTATTTGCACGATTTGGGAGACCAACATCATTCGAACAAACGTCAT CAAAAGATACGATGATTTTATGGTCATGCTTGGACTCTTCCAGATGGCAG CCATTGTGGTTCTCCCATTCTCCATCGCTTTGAATGGTGCATACCCAAGA GAGGATGTGACTGTGCTCCTCACCATAACCATTTTGATCATTATCAACAT TTTCGAACTGATCATGATTTTGTACGGATTCTACTGTCCAAGGTTGCTCA ATATGGCCATGAAAGACTGGAGCAATAAGGAGGTCCGACGGTTCATGCTG AGAATGTGCATTAAGCCAATCGTTGAAATAGTTTTAGTGGGCGTTGCTGG CGCATTTAGCTTGTTGAGGTATGAAATCTCATGGGTTTTACTGGCTCTTT TGATCGCCGTGCCCTTGTTTCGAAGATTGGCTTTCTACTACGAGCGACAT CACCACTCAAATGCCAAAGTTGAGAAATGCAGATTCTACTATTTCTTCAC GAAAGGACAGATCAGTAAAGAAAGAGTAGAAGCATTTTCGGACGCAGCGA TCGCAATCATTGCATGTGTATTGATTTTGGACATCACAGTTGAAGAGTTC CCAACAGCTCACGACGTGAAAGAAAAAGGCTTGATTTCCGTACTCTCTCA CTTAAGAATTGAAATAGGCGCCTTCTTCGGCACTTATTTGGCAGTTTCTT TGCTGTGGTACGTCAACCATACTGTATTACATCTTTTCCATACCATCGAC ATTGGCGCATTGTATTTGCAGAAAATCTTTCTTGCATTCCTCTGCCTTGC TCCCATTCAAAACAACATGATGGTAAAGACAGCCAACAAGGGATCCGATG CTGAAAAACAATTAGCCTTGCAATGGAGCAGTGGAACTGTTTTCGCTGCA AGCTTCTCACAAGTTCTTATGGTGGCCTGGGGATTCTACCGCAAAGGGAA ACTCTTCCATCGCTGGGCTACTTGTGAGAGTACATTCGACACTTTGATGA ATCGTAAACAATCCATGTATATTCGTTTCAAAGTCGCAGCCATTCCCTTT TGGTCATTTATCGGTATTTTTTCATCATTTGCATCCGGCGACATAGGATT TATAATCACAATTGTATGCATCATCTCCACTATCCTCTCATTAATCCTGC TCAAATTTATCTTCATGAATCACGTGAGTAAAAAGGACAAATTCCTTACC AACGGTAAAACAATATCAAGAGATCAGTCGATCGAATCACTCGGTGACAT TGAACTACGGAACAGTATGGCGGAGGAGATAGCGGATGGGAAAATGTACG AGGATGAAAATGAGATGGAAAGAGAAGTGATGGAAGACACAGAAAAGAAA AATTGAAGAAACAAAAAAATGAGGAACGATAGGAAAAAGACATGGCTCAA AACCATTCAGAAAATGGTAGATTACGTCATCACCGATAGAGACAATCATT CTAAAATGAACGGTATTAAGTTTAAGGTGCAGGGATTTTAAACAGATAGT TTGATATAATTATATTATCAAAAAAATTCGGAAAATGTAATAAAGTTTAG AGTGATGACACATATCATTGATAAAATCTTTGTTTGGTTGGAAAACTATG AACACCCCTGTCTCAATTACCCGGAGAATACCTAAACCAGTAGGGATGAC ATTAAGATGCTGAATGCCGATAAGGGGGATTCTTGTTTTGAATTTCAATT GTTATTGAGGAAGACCTAAAACATATTCTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000635XLOC_000635Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001169-exon-sc0000007-1575043694:654460..656941TCONS_00001169-exon-sc0000007-1575043694:654460..656941Clytia hemisphaericaexon
TCONS_00001169-exon-sc0000007-1510915933:654460..656941TCONS_00001169-exon-sc0000007-1510915933:654460..656941Clytia hemisphaericaexon
TCONS_00001169-exon-sc0000007-1491911889:654460..656941TCONS_00001169-exon-sc0000007-1491911889:654460..656941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:654460..656941 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0476991 0.0704713 0 0.0172898 3.63518 2.8029 2.97531 3.89472 12.1181 4.16793 5.73124 27.709 1.13913 1.07456 1.13083 1.56438 0.270723 0.454738 2.23355 1.7515 0.603089 0.622711 0.393638 0.539666 0.716198 0.908736 2.72404 3.69389 0.112754 0.136597
Blast
BLAST of TCONS_00001169 vs. Swiss-Prot (Human)
Match: TM175 (Endosomal/lysomomal potassium channel TMEM175 OS=Homo sapiens GN=TMEM175 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.296e-23
Identity = 103/393 (26.21%), Postives = 182/393 (46.31%), Query Frame = 1
Query:  526 ITTVNRFLGYHDAMMATCGTFLVLPLRNLNNFVKTEIYDELEKNHELPHDPVVVDDLAEYIDATKTKLIMFFLGFLIICTIWETNIIRTNVIKRYDDFMVMLGLFQMAAIVVLPFSIALNGAYPREDVXXXXXXXXXXXXXXXXXXXXXYGFYCPRLLNMAMKDWSNKEVRRFMLRMCIKPIVEIVLVG-----VAGAFSLLRYEISWVLLALLIAVPLFRRLAFYYERH--HHSNAKVEKCRFYYFFTKGQISKERVEAFSDXXXXXXXCVLILDITVEEFPTAHDVKEK---GLISVLSHLRIEIGAFFGTYLAVSLLWYVNHTV-LHLFHTIDIGALYLQKIFLAFLCLAPIQNNMMVKTANKGSDAEKQLALQWSSGTVFAASFSQVLM 1671
            I    R L + DA+++   T ++LP+ +      TEI  E + +         V  L        T++ ++ + FLI+   W  +     V+ + DD + +L L  M  I  LP++ +L   +P   + + L    +I I + + +++ Y F+ P LL+  ++  +++ + R       + ++ IVL G      A  FSL    +S++L+  +I +P   ++  +       H          + F     +SKERVEAFSD   AI+A +LILDI  +  P   DVKE+    L++ LS       A+FG++  V LLW+ +H++ LH+        L L  + LAF+   P+        A +  D  ++  ++ S   +F AS  Q+ M
Sbjct:   30 IQCSQRMLSFSDALLSIIATVMILPVTH------TEISPEQQFDRS-------VQRL------LATRIAVYLMTFLIVTVAWAAHTRLFQVVGKTDDTLALLNLACMMTITFLPYTFSLMVTFPDVPLGIFLFCVCVIAIGVVQALIVGYAFHFPHLLSPQIQRSAHRALYR-------RHVLGIVLQGPALCFAAAIFSLFFVPLSYLLMVTVILLPYVSKVTGWCRDRLLGHREPSAHPVEVFSFDLHEPLSKERVEAFSDGVYAIVATLLILDICEDNVPDPKDVKERFSGSLVAALSATGPRFLAYFGSFATVGLLWFAHHSLFLHVRKATRAMGL-LNTLSLAFVGGLPLAYQQTSAFARQPRDELER--VRVSCTIIFLASIFQLAM 393          
The following BLAST results are available for this feature:
BLAST of TCONS_00001169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1758.296e-2326.21Endosomal/lysomomal potassium channel TMEM175 OS=H... [more]
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