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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001144 ID=TCONS_00001144|Name=TCONS_00001144|organism=Clytia hemisphaerica|type=transcript|length=3993bp
CATGAATTGATTAATTTCTTTTGAAGGCTTGTTTTTCAGCGAAACATGCA
AATGAAGAATAAGAAGGCTGGGAATGCATTACAATTCTTAATTATCAAAA
CAGTGCGAAACAGTGCGAAACGATTGAAAGTCACCTCTTGTTTGATGAAA
TAAGGAGATCATTTCGCTATTTCTGtttgtgaaaaatttgctttgagtAC
ACTCATAAAGCGATGTTGCTCTTGTTTGGTGTGTATCTTCTCCTTCCGTG
GACACCATTTGTCTTCACCAACACTGTCGATATTCTTGGTCTGTTCACCT
TCACAAACTGCAATGCTGATTCAGCAGAAGATTGCTCCAACGCTCTGGTC
AACGAGCGACGAATGTCTTTGCATAATGTTCAGAAAAAATACAGCGAGAA
TGTCCGCTTATGTTTCAAAGATGTCGAGAACGATCATGAGAAATTGTTCC
AGTTGCTCCTTCCCTTGATCGACGGTAAAGAGNGCAAGTTTTAAATCATT
CATGATccgaattttttatttttataacttattttttatgaaactttTAA
ATTAGATATGGGACAAGTATCAAATTATCATATTAATCTTAAAGCCTTTC
AAGGTAATTAAGCTTACATATCTTAATGCTGAAATTAGGTCCAAAATTAA
TATGACTTTCTTCAATTCGAAGCCTAACCGATGGCAATCGTTAAGATCAA
AGAGTATCAAAATGGATGTTGATTTATAGTTAGTCTATTATGTATTAGTC
GGCATCTTCCCGAACTCTTTTATGTGCGATTTCTCTCATTCTCACGTTTT
AGTTTTGTTATGGTTTATTCATACTAGGGAACATATTATAATCAGATCAC
ACGATATGATCACAGTTATATCTTTCCCATAATGAAATCTATAATCAAAT
AACTTCTACTCAAAATGATAATGgaatcaaaatcaaaagaataGAAGCAA
ATGAAAAGATGATTCTATCTTCAGTATTTAATTTCAACCATGAATTGATT
AATTTCTTTTGAAGGCTTGTTTTTCAGCGAAACATGCAAATGAAGAATAA
GAAGGCTGGGAATGCATTACAATTCTTAATTATCAAAACAGTGCGAAACA
GTGCGAAACGATTGAAAGTCACCTCTTGTTTGATGAAATAAGGAGATCAT
TTCGCTATTTCTGtttgtgaaaattttctttgagtACACTCATAAAGCGA
TGTTGCTCTTGTTTGGTGTGTACCTTCTCCTTCCGTGGACACCATTTGTC
TTCACCAACACTGTCGATATTCTTGGTCTGTTCACCTTCACAAACTGCAA
TGCTGATTCAGCAGAAGATTGCTCCAACGCTCTGGTCAACGAGCGACGAA
TGTCTTTGCATAATGTTCAGAAAAAATACAGCGAGAATGTCCGCTTATGT
TTCAAAGATGTCGAGAACGATCATGAGAAATTGTTCCAGTTGCTCCTTCC
CTTGATCGACGGTAAAGAGTACGTCATCCAATGTCGAAATAATCAAACTA
TGAAACTCAATTATGAGCGATTGTTTATCTTCACTTATCTATCGTTTGAT
TTGACCAGGATTGCCAGCTCCTTGCTTCTACCTCTGGACACGTTTCCAAT
GATCTCAGTGACTCACTACGTTATGTATCCAGCGTATTATTTGGACCATC
ATTTAGCAGTATATAGTTACCAGTCAAGCTTCGGTGAAGAAATGCATCGG
GAGGGCTTCATCAAACTGAAAAACCTTTACAACGTTACACTAGGTGCTAT
TGTGCGTCTACATAAGGGAGATAAAAACATCCATAATCCAGTTAATTGTG
TGCCTGGAGAGAGTACAGCCTGGTGTTTATACACAAGCGAAAGTCCTTCT
GACTGCTATAAAGAAACTTCTGTTGATGTGTACAACGAAACTGCCATCTC
GCTTACAAAGAAGCTGTTAGCAAAGGAGAGACTCTCCTTCATCATACTTG
AAGGCGAAAGTCATCTGGTGTCTCGTTTTGATGATATCAAATCAAGCAAA
GACGAATTCTATTTGCCATTcacaaaaaaaaccaaaactgCATTTAAAGG
GAGCCTGAACATGACACATTATctagaatcaaatattttggtgAGTTTTC
CAGGCACATTTGCCATCAATCACATGTTTTACTTTATCTTTCATCTGACA
GGACATTTAATGTACTGGGAGAGTATTTGGGTTGGAATATTACCTGATAC
CAAAGTGCAAAAGTTTATCAAGAAAAATCTGCCTTGTCCTTTAGTGAAGT
TCTACGTGAGTACTTACCGTTGTGGGGATGACTTCACTTATACTTTATGG
ACAAGTATTCCAACACAAGTCCGAACAATGCTGGTCAACCGAATCGTGAA
AGAGAAAGTCATTGTTGGGTCTATGTTCGACTTATTCAAACGGAGGTATT
ATATGCAAGAAATCGATCACATGCAACTTACAACACAGTACGAGTTCAAT
CCAAGCAGAGCATTGAAAATGAAACCTTTTTGTCATTTGAGGATACCATC
TTGTCGAGCTGGAGAACAATTGGTTCATTCTTATTACAAAGAACCTCATT
GGCAACGAAGCAAGGGTTGGAATTGCCAGCTTTGTCCACGGCACCGTTAC
AAACCATTGGCTGGTAATAAGGAGAAATGCATTTCATGTGATTACCCTTT
CGCCACAAACGCTAATCGTTCGTCATGTCACGATCCTTtccaattgaaaa
aaattgatgctTCGGATCCTGTCATGATTTGTGTTCTTGTATTCTCCACT
TTTGTTTTCaccctcattttactgaccatgTTCATTTTCTACGGTAACCG
AAAAACCCCTATCGTTTTATCATCGAATCGGCAAATGACTATTCTTCAAC
TAACCACGCACTTGGTGTTGACAGCAGCACCACTTTACTTATACCTCAGT
GAATTAACGCTCACTAAATGCATCTTAAGGCAAGTGGTCATCGGGATGAG
TTTTTCGATCACAATTTCagtcaatatttcaaaaacacaGAAAATCTTCA
TGATTGCAAACAAAACAACTCTGATGACTCGTTCAGAAATCCTCTTAACG
AAAGCTTCAGAATGGATGATTATCGGGACTGCACTTTTTTTCAACATGGC
GTTACACTTGACAACAGCTCTGTACTATTCTTTCAGTATACAAACCAAAT
ACCATGATCACACAATCACAAAAGAGCATTACTGTAGCAATGGTCAAATG
ACTTCATACCAGCTATTTTACGCTGCTTTTCTTAGTGTTATTAACGGTGT
TCAAGGAATTCGCGGTCGCAAACTTCCATCGCGATTTCGCGAAACCACCC
ACGTGATTTATTCTTTTTTCATCTCCTTTATTGTGATCGTATCGACGGGA
GGAATATATGTCACTAgggtgtattttacagaccaggcGGTCATAGTGTT
TGTTGTGACGATTGTTCTGAACACTGTTCACTTCGCACTGTTGTATATTT
ATAAAGTCTACATCATCTTGTTCAAACCATCCACCAACACAAGAAGCAAT
ATGAATCAACAACGAATCTCACGCATGCAATCTAACTTTCGAAAATCGAC
AATGCTACCAACTTCAAGCATTGAGAGTTCTTCTTGAAGTCCTGTAGATA
AGATATATTTTTCACATTCTTTCACATGTTTACATTCTTAAAAGGTTTCG
ATTCCCTGTTAAGTCTTAAACCATCAACGGTTAATGATAACTTTGGCTCG
CGAATTGCTCTGTGATAATAATCTATGAAATTTGCAGGAAATACCTTCCT
TCTAAGGCTTTTTAGGTTTAGTGACCTTTAGTGACAATACAAATGACTTA
ATCTGATTTATCTCTCGTATTTCTTTTGGGAttgtaaatatgtttttatt
aattaaatATCATAATTTTACTCGAGAAACTTAATTACGAATCTTTATTT
TGACAATGTTTGAAAATTaggaattattttttgaaattttattttgtggg
atatttttgtaaaaagacgAAATCTAGTAAATCAAACAAAGAC Run BLAST on NCBI transcript from alignment at sc0000007:508570..512562- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001144 ID=TCONS_00001144|Name=TCONS_00001144|organism=Clytia hemisphaerica|type=transcript|length=3993bp|location=Sequence derived from alignment at sc0000007:508570..512562- (Clytia hemisphaerica)
CATGAATTGATTAATTTCTTTTGAAGGCTTGTTTTTCAGCGAAACATGCA
AATGAAGAATAAGAAGGCTGGGAATGCATTACAATTCTTAATTATCAAAA
CAGTGCGAAACAGTGCGAAACGATTGAAAGTCACCTCTTGTTTGATGAAA
TAAGGAGATCATTTCGCTATTTCTGTTTGTGAAAAATTTGCTTTGAGTAC
ACTCATAAAGCGATGTTGCTCTTGTTTGGTGTGTATCTTCTCCTTCCGTG
GACACCATTTGTCTTCACCAACACTGTCGATATTCTTGGTCTGTTCACCT
TCACAAACTGCAATGCTGATTCAGCAGAAGATTGCTCCAACGCTCTGGTC
AACGAGCGACGAATGTCTTTGCATAATGTTCAGAAAAAATACAGCGAGAA
TGTCCGCTTATGTTTCAAAGATGTCGAGAACGATCATGAGAAATTGTTCC
AGTTGCTCCTTCCCTTGATCGACGGTAAAGAGNGCAAGTTTTAAATCATT
CATGATCCGAATTTTTTATTTTTATAACTTATTTTTTATGAAACTTTTAA
ATTAGATATGGGACAAGTATCAAATTATCATATTAATCTTAAAGCCTTTC
AAGGTAATTAAGCTTACATATCTTAATGCTGAAATTAGGTCCAAAATTAA
TATGACTTTCTTCAATTCGAAGCCTAACCGATGGCAATCGTTAAGATCAA
AGAGTATCAAAATGGATGTTGATTTATAGTTAGTCTATTATGTATTAGTC
GGCATCTTCCCGAACTCTTTTATGTGCGATTTCTCTCATTCTCACGTTTT
AGTTTTGTTATGGTTTATTCATACTAGGGAACATATTATAATCAGATCAC
ACGATATGATCACAGTTATATCTTTCCCATAATGAAATCTATAATCAAAT
AACTTCTACTCAAAATGATAATGGAATCAAAATCAAAAGAATAGAAGCAA
ATGAAAAGATGATTCTATCTTCAGTATTTAATTTCAACCATGAATTGATT
AATTTCTTTTGAAGGCTTGTTTTTCAGCGAAACATGCAAATGAAGAATAA
GAAGGCTGGGAATGCATTACAATTCTTAATTATCAAAACAGTGCGAAACA
GTGCGAAACGATTGAAAGTCACCTCTTGTTTGATGAAATAAGGAGATCAT
TTCGCTATTTCTGTTTGTGAAAATTTTCTTTGAGTACACTCATAAAGCGA
TGTTGCTCTTGTTTGGTGTGTACCTTCTCCTTCCGTGGACACCATTTGTC
TTCACCAACACTGTCGATATTCTTGGTCTGTTCACCTTCACAAACTGCAA
TGCTGATTCAGCAGAAGATTGCTCCAACGCTCTGGTCAACGAGCGACGAA
TGTCTTTGCATAATGTTCAGAAAAAATACAGCGAGAATGTCCGCTTATGT
TTCAAAGATGTCGAGAACGATCATGAGAAATTGTTCCAGTTGCTCCTTCC
CTTGATCGACGGTAAAGAGTACGTCATCCAATGTCGAAATAATCAAACTA
TGAAACTCAATTATGAGCGATTGTTTATCTTCACTTATCTATCGTTTGAT
TTGACCAGGATTGCCAGCTCCTTGCTTCTACCTCTGGACACGTTTCCAAT
GATCTCAGTGACTCACTACGTTATGTATCCAGCGTATTATTTGGACCATC
ATTTAGCAGTATATAGTTACCAGTCAAGCTTCGGTGAAGAAATGCATCGG
GAGGGCTTCATCAAACTGAAAAACCTTTACAACGTTACACTAGGTGCTAT
TGTGCGTCTACATAAGGGAGATAAAAACATCCATAATCCAGTTAATTGTG
TGCCTGGAGAGAGTACAGCCTGGTGTTTATACACAAGCGAAAGTCCTTCT
GACTGCTATAAAGAAACTTCTGTTGATGTGTACAACGAAACTGCCATCTC
GCTTACAAAGAAGCTGTTAGCAAAGGAGAGACTCTCCTTCATCATACTTG
AAGGCGAAAGTCATCTGGTGTCTCGTTTTGATGATATCAAATCAAGCAAA
GACGAATTCTATTTGCCATTCACAAAAAAAACCAAAACTGCATTTAAAGG
GAGCCTGAACATGACACATTATCTAGAATCAAATATTTTGGTGAGTTTTC
CAGGCACATTTGCCATCAATCACATGTTTTACTTTATCTTTCATCTGACA
GGACATTTAATGTACTGGGAGAGTATTTGGGTTGGAATATTACCTGATAC
CAAAGTGCAAAAGTTTATCAAGAAAAATCTGCCTTGTCCTTTAGTGAAGT
TCTACGTGAGTACTTACCGTTGTGGGGATGACTTCACTTATACTTTATGG
ACAAGTATTCCAACACAAGTCCGAACAATGCTGGTCAACCGAATCGTGAA
AGAGAAAGTCATTGTTGGGTCTATGTTCGACTTATTCAAACGGAGGTATT
ATATGCAAGAAATCGATCACATGCAACTTACAACACAGTACGAGTTCAAT
CCAAGCAGAGCATTGAAAATGAAACCTTTTTGTCATTTGAGGATACCATC
TTGTCGAGCTGGAGAACAATTGGTTCATTCTTATTACAAAGAACCTCATT
GGCAACGAAGCAAGGGTTGGAATTGCCAGCTTTGTCCACGGCACCGTTAC
AAACCATTGGCTGGTAATAAGGAGAAATGCATTTCATGTGATTACCCTTT
CGCCACAAACGCTAATCGTTCGTCATGTCACGATCCTTTCCAATTGAAAA
AAATTGATGCTTCGGATCCTGTCATGATTTGTGTTCTTGTATTCTCCACT
TTTGTTTTCACCCTCATTTTACTGACCATGTTCATTTTCTACGGTAACCG
AAAAACCCCTATCGTTTTATCATCGAATCGGCAAATGACTATTCTTCAAC
TAACCACGCACTTGGTGTTGACAGCAGCACCACTTTACTTATACCTCAGT
GAATTAACGCTCACTAAATGCATCTTAAGGCAAGTGGTCATCGGGATGAG
TTTTTCGATCACAATTTCAGTCAATATTTCAAAAACACAGAAAATCTTCA
TGATTGCAAACAAAACAACTCTGATGACTCGTTCAGAAATCCTCTTAACG
AAAGCTTCAGAATGGATGATTATCGGGACTGCACTTTTTTTCAACATGGC
GTTACACTTGACAACAGCTCTGTACTATTCTTTCAGTATACAAACCAAAT
ACCATGATCACACAATCACAAAAGAGCATTACTGTAGCAATGGTCAAATG
ACTTCATACCAGCTATTTTACGCTGCTTTTCTTAGTGTTATTAACGGTGT
TCAAGGAATTCGCGGTCGCAAACTTCCATCGCGATTTCGCGAAACCACCC
ACGTGATTTATTCTTTTTTCATCTCCTTTATTGTGATCGTATCGACGGGA
GGAATATATGTCACTAGGGTGTATTTTACAGACCAGGCGGTCATAGTGTT
TGTTGTGACGATTGTTCTGAACACTGTTCACTTCGCACTGTTGTATATTT
ATAAAGTCTACATCATCTTGTTCAAACCATCCACCAACACAAGAAGCAAT
ATGAATCAACAACGAATCTCACGCATGCAATCTAACTTTCGAAAATCGAC
AATGCTACCAACTTCAAGCATTGAGAGTTCTTCTTGAAGTCCTGTAGATA
AGATATATTTTTCACATTCTTTCACATGTTTACATTCTTAAAAGGTTTCG
ATTCCCTGTTAAGTCTTAAACCATCAACGGTTAATGATAACTTTGGCTCG
CGAATTGCTCTGTGATAATAATCTATGAAATTTGCAGGAAATACCTTCCT
TCTAAGGCTTTTTAGGTTTAGTGACCTTTAGTGACAATACAAATGACTTA
ATCTGATTTATCTCTCGTATTTCTTTTGGGATTGTAAATATGTTTTTATT
AATTAAATATCATAATTTTACTCGAGAAACTTAATTACGAATCTTTATTT
TGACAATGTTTGAAAATTAGGAATTATTTTTTGAAATTTTATTTTGTGGG
ATATTTTTGTAAAAAGACGAAATCTAGTAAATCAAACAAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001144-exon-sc0000007-1575043694:508570..512562 | TCONS_00001144-exon-sc0000007-1575043694:508570..512562 | Clytia hemisphaerica | exon |
| TCONS_00001144-exon-sc0000007-1510915933:508570..512562 | TCONS_00001144-exon-sc0000007-1510915933:508570..512562 | Clytia hemisphaerica | exon |
| TCONS_00001144-exon-sc0000007-1491911889:508570..512562 | TCONS_00001144-exon-sc0000007-1491911889:508570..512562 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:508570..512562 - |
Blast
The following BLAST results are available for this feature:
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