TCONS_00001141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001141
Unique NameTCONS_00001141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001141 ID=TCONS_00001141|Name=TCONS_00001141|organism=Clytia hemisphaerica|type=transcript|length=1535bp
GAATGTTGGCAACAGAGCCCGCCCTCACGCCCTTCCTCGTACGAAATGAG
CGCCTTCTTCAAATCAACTGACATGATGACCCTCCGTGCACTGTACCCAA
GCAATCAAGATTCGATCTATCTGGAACATGTCACTTGCCATACTATTTGG
CACACTAATTTTCCCGGTAGGGTTTGCTTTGTTTtatttgtgttttattt
tagaactttaaagataacttttatgtacaaacaatATGAAGTAGGCCCTA
AATACTAATCtgtcaactactaacgaacaaaacttgatttacaagcggga
atatctaaccaaacgacgtttgatagttTGAACGGTCagcttgattttct
ttatgatgaaccatatagatgaacccatagtctgcggccgggtcagaaaa
actttttttttcacccggccggtttccggaaacactacatttttttattt
tcgcctaaaatctaaattttttcttaatgaAATGATTTTCGAATACCCGT
AAAGATAATTAATTTTGACAGTGATTTTTGCTGGCTAGTCTCTTTCAAAT
GAATTAATGGTCAAATGCTAAAGAAAAAACAACGTatttcttgaatattt
ttttccactCTTTCAAACCAAACAATTTAGGTATATAGAATACAAGTTAT
ATGGAAACCCATCTCATTTCTTGTAGTCGGTAGTTTGTGAGCTACTGATT
GATGAAAAGGAAGAATCGTGGTCTTCAAACTTGTAATGATTATTCTCATT
CTTCGACATTTTGCCATTTAGATGCTCAGGAGTGTACGTGTCTCCATCCT
TCTGCCCTTGGACACCGAAAAAGGATTTACCACCTTCTTTGTCTTTAGCA
CTTGTCCCTGTTTGCTCATAAGAAAGCTCATCTCTTGTTACCGCCATTGT
CTGTCCATGTTTCGTCCCTTCGACCCTTTCATTTGTGCCTGCGTATCTCA
GCTCCTTGTATTGTGTCTTATCGAAATCAGTTTTATGGttcatctttttg
tttacatgGTGGTCTCCTTCAAGGTGATGCTTTGCGAAGTGATCGGATGA
CATCTTGCTTTTGCTTTTAAAACTCGACTGCTGACTTGTGCTATTAACTG
TTTAAATTATTCACATACTAATTGGGCCATTTCAACTTATATCCATACAT
GGGATGGAAGAAcgtttccagggggtaaaatgttattttaaaatttccag
ggtgTAAAAGACTGATTTAAGCTCTTCCACCGTCACTTTAAttaaggtaa
taaaaatattatcCACACCCTGTCtggatttttaatggaacagcccatta
tGAAATATCGATATCGTggatttttgctttaaataatCAGTAGTCTCTCT
CAAAAGTCAATTTAGATTATTAACTGATAAAAGGTTCCCAGGAAGAACGC
TGGGAAAATATGAACTGACAACTGAAAATGTATTAACGACATAACAGAAA
AAGAtctttggtttttcgaaaaataaaaaaaaaagctactCGAACCTTCG
AATGCAATTGGATGGAAGTTAAATGAATCTTGGCG
Run BLAST on NCBI

transcript from alignment at sc0000007:489002..490536-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001141 ID=TCONS_00001141|Name=TCONS_00001141|organism=Clytia hemisphaerica|type=transcript|length=1535bp|location=Sequence derived from alignment at sc0000007:489002..490536- (Clytia hemisphaerica)
GAATGTTGGCAACAGAGCCCGCCCTCACGCCCTTCCTCGTACGAAATGAG
CGCCTTCTTCAAATCAACTGACATGATGACCCTCCGTGCACTGTACCCAA
GCAATCAAGATTCGATCTATCTGGAACATGTCACTTGCCATACTATTTGG
CACACTAATTTTCCCGGTAGGGTTTGCTTTGTTTTATTTGTGTTTTATTT
TAGAACTTTAAAGATAACTTTTATGTACAAACAATATGAAGTAGGCCCTA
AATACTAATCTGTCAACTACTAACGAACAAAACTTGATTTACAAGCGGGA
ATATCTAACCAAACGACGTTTGATAGTTTGAACGGTCAGCTTGATTTTCT
TTATGATGAACCATATAGATGAACCCATAGTCTGCGGCCGGGTCAGAAAA
ACTTTTTTTTTCACCCGGCCGGTTTCCGGAAACACTACATTTTTTTATTT
TCGCCTAAAATCTAAATTTTTTCTTAATGAAATGATTTTCGAATACCCGT
AAAGATAATTAATTTTGACAGTGATTTTTGCTGGCTAGTCTCTTTCAAAT
GAATTAATGGTCAAATGCTAAAGAAAAAACAACGTATTTCTTGAATATTT
TTTTCCACTCTTTCAAACCAAACAATTTAGGTATATAGAATACAAGTTAT
ATGGAAACCCATCTCATTTCTTGTAGTCGGTAGTTTGTGAGCTACTGATT
GATGAAAAGGAAGAATCGTGGTCTTCAAACTTGTAATGATTATTCTCATT
CTTCGACATTTTGCCATTTAGATGCTCAGGAGTGTACGTGTCTCCATCCT
TCTGCCCTTGGACACCGAAAAAGGATTTACCACCTTCTTTGTCTTTAGCA
CTTGTCCCTGTTTGCTCATAAGAAAGCTCATCTCTTGTTACCGCCATTGT
CTGTCCATGTTTCGTCCCTTCGACCCTTTCATTTGTGCCTGCGTATCTCA
GCTCCTTGTATTGTGTCTTATCGAAATCAGTTTTATGGTTCATCTTTTTG
TTTACATGGTGGTCTCCTTCAAGGTGATGCTTTGCGAAGTGATCGGATGA
CATCTTGCTTTTGCTTTTAAAACTCGACTGCTGACTTGTGCTATTAACTG
TTTAAATTATTCACATACTAATTGGGCCATTTCAACTTATATCCATACAT
GGGATGGAAGAACGTTTCCAGGGGGTAAAATGTTATTTTAAAATTTCCAG
GGTGTAAAAGACTGATTTAAGCTCTTCCACCGTCACTTTAATTAAGGTAA
TAAAAATATTATCCACACCCTGTCTGGATTTTTAATGGAACAGCCCATTA
TGAAATATCGATATCGTGGATTTTTGCTTTAAATAATCAGTAGTCTCTCT
CAAAAGTCAATTTAGATTATTAACTGATAAAAGGTTCCCAGGAAGAACGC
TGGGAAAATATGAACTGACAACTGAAAATGTATTAACGACATAACAGAAA
AAGATCTTTGGTTTTTCGAAAAATAAAAAAAAAAGCTACTCGAACCTTCG
AATGCAATTGGATGGAAGTTAAATGAATCTTGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000630XLOC_000630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001141-exon-sc0000007-1575043694:489002..490536TCONS_00001141-exon-sc0000007-1575043694:489002..490536Clytia hemisphaericaexon
TCONS_00001141-exon-sc0000007-1510915933:489002..490536TCONS_00001141-exon-sc0000007-1510915933:489002..490536Clytia hemisphaericaexon
TCONS_00001141-exon-sc0000007-1491911889:489002..490536TCONS_00001141-exon-sc0000007-1491911889:489002..490536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:489002..490536 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.639107	0.488426	1.44098	1.59795	0.907971	0.613712	0.907625	1.16423	0.665496	0.847003	0.514781	0.615301	15.2137	12.6302	0.64737	1.15467	0.826824	1.0531	6.90738	6.73625	0.387626	0.459221	0.640271	0.581466	1.04513	1.06706	1.29162	0.827576	0.6716	0.622678
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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