|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001140 ID=TCONS_00001140|Name=TCONS_00001140|organism=Clytia hemisphaerica|type=transcript|length=9247bp transcript from alignment at sc0000007:479133..507861- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001140 ID=TCONS_00001140|Name=TCONS_00001140|organism=Clytia hemisphaerica|type=transcript|length=28729bp|location=Sequence derived from alignment at sc0000007:479133..507861- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00001140 vs. Swiss-Prot (Human)
Match: LRRK1 (Leucine-rich repeat serine/threonine-protein kinase 1 OS=Homo sapiens GN=LRRK1 PE=1 SV=3) HSP 1 Score: 708.368 bits (1827), Expect = 0.000e+0 Identity = 518/1719 (30.13%), Postives = 822/1719 (47.82%), Query Frame = 1
Query: 310 LLCVACILQNHTLVELLT-NRGVDV-NHGTTKHE----LLSPLYIACINEDIEMITYLMNNKAEVISVIAKEFPTLISQVLEKR-IEEYKVPRRKGKMKNSQKKKTMYRLCWENSHLHALNKDWFMVEKYNITRVELPRNKLTKLVDGFFQLLPLLEELDVASNHLMALP----SDHLANSKLKRLDVSSNQLRSLPESLFFNQNIVVIDASSNQLSSL--PHTHTNW-KCSALEKFVCSKNELTELPK-SIAGANRIQILNLSRNKFEVFNRWWKCPLVDVNLSFNHIKDFTLKTDSFWSKTIKTLNLTRNNLDFIPSSILHLTKLENLKLARNALKTLPRPDLWKTKRLLDLDLSYNQITTTPITDGFLDLETEEVEYNNT-------------CELPVKIFADTLQSLNLAHNLLDEIPETLCQLKALGRLDLSHNTGLTFLPPKLGLLKNIWSLNLSGLDIKNVPHKFEGLNHVKVLSFLRAKLRKSKPFNRIKLMLVGLQGRGKTTLVHAIQGKPPPPNI---STVGIIVEQFVLPLRNQYYFYSSPSPEIMFSVWDLAGQQVYYATHQCFLSGKTLYLVVYNVTHGSEGIDSLGSWLLNIQARAPNSRCIIVGTHVDKMPVYRKEETLIKYRKQIM------DKFMKEGFPAIS--KCVFVSGTSNENIEELREVVYKEAEAMNH-------QSDLGKLAPISYLELYDQIIMESVRRNEQQRPPVLTTEEMLQLAEQNTNNDIMDFEELCTASQFLHENGVLLHFNDHLRGLNNLFFIDPSWLIDIVALVVTVRQRNPYVQKGYITEQELLYILKNPWLPEKFIPQYLRLLERFEILLSLEDGKFLIPCMLSEEKPDIE-HKMLHVITSEEIRHHQINVERTTNYLTRNYHMQYVPAGFWARFIARLVIAVQKWSLQIQQDGNTGYTKQ---------------------------LWRKGLMVTYEDGYFLIESFHDQELRPKKWSNQGVSITVWSKTKDFSVMGFIVDHMEMLITEWYPGLEGINDYGDNLVQKLISCPICCAQKAIDLVQCCDQNTISLRNHYGSFFRNEFFINQFPLDTCAYAAIDHQEIICVKHPDQPVRLELLIPEIMMTDLPQKYCITEDSLDFDPHTSRKLGDGGAG-VVYLGRYDDEDVAIKRSHSVIMKESQQGEGAFDPSDRSVTQLLSLDDGRVVKSFWEMRQEVLVLCTLQHANIVKFLGVCFSPLCFVIEFAPMGSLFGILEKEQKKAELPILGMQLTYLILFQITEAIKYLHSWNIIYRDLKSENVLVMSLDPQQTINVKLSDYGIAAFATPQGVTGVAGTPAFQAPEIQKDYTYDEKVDIFSYGIWMYELLTGCLPYLEYRSSSEIKKAIQTGVRPDFRKEGYRLSYPYAELLMNECWQQSPPSRPSSYEMSAFFKSTDMMT-LRALYPSNQDSIYLEHVTCHTIWHTNFPDTMQCDPSDKILLWNNKKENRTFVLFDLKCHTIRYND-SLPGPRVSCACQVEENVWLGCETNRV----IEIFGFVNS-----EVPKVLWTF---SDFEDDILMMQKHESEGILTVFTTLANGTLVIFTKMVHH---RKSELIEEEDLWSRQVINLQTRGRPAKCMTITNNQTELWVGSGNCIVVLNIQTREIVDRLAVTKMSDQNALISVMC---GDGEDTVWTSLWKSGFVTQWNVKERTKTFEYYCSEDKPLH 5181
+L +AC + +V+LL G D ++ K+E + PLY A + + ++ +L+ + A S I + P +L K IE +P +S KT R+ W + L ++ DW + IT ++L N L L L L +L+++ NHL LP SD + S+L +D+SSN+L LP + + AS N L L TNW L++ S N+LTELP + + LN+SRN +VF W CPL S N ++ K FW +K ++ + N L +P + L L L+L N L LP + W ++L LDLS NQ+ DG L+T+ + + T E P +++L+ L L N LD +P ++C LK+L L L +N GL LPP+LG L N+W L+ L I NVP + + +LS+LRA+LRK++ +K+++VG +GK+TL+ +Q P + +T+ + P ++ S + F+VWD+ G +QCF + K LY+VV+N+ G E + +L WLLNI+A+APN+ ++VGTH+D + + E + R ++ GFP I+ +S S E E LR++++ +M Q G+L P SYL L + ++ E RR+ LT ++ QL EQ +NDI D+E+L +A FL E G LLHF D GL NL+F+DP WL + + + ++ + G I ++L +L ++ QY + L +FEI L + + +L+P +L KP ++ H M H T N + R + M +VP GFW RFIAR++I++ + LQ+ ++ ++ W++GL+VT++ GY +ES ++ KK + G+ I S+ +DFS M FI DH+ LI +W+P L G L+++ + CP+C A Q D + S Y F ++ C AI+ I C +HPD PV L+ L+PE+ MTD P + + L+ LG GG+G V+Y RY + VA+KR H K A P+D + L + D +K+F E RQE +L LQH IV +G+ PLCF +E AP+ SL +L + + + LG LT I +QI + YLH NII+ DLKS+N+LV SLD ++ IN+KLSDYGI+ + +G GV GTP +QAPEI+ YDEKVD+FSYG+ +YELL+G P L + +I K + G+RP + + + + LM ECW P RP + + + K T + L Q + + +T ++ W+ K+E+R + + + + + PG +VSC QV+ ++W E ++ ++ +N+ + P V+ F + + ++ ++G++ VF + + + H R I +ED +RQ P K M + N+ +E+W +G ++V++ + EI RL + + SV+C G GE+ VW K+ + ++ Y+C PL
Sbjct: 156 MLALACQRGHLGVVKLLVLTHGADPESYAVRKNEFPVIVRLPLYAAIKSGNEDIAIFLLRHGAYFCSYILLDSPDPSKHLLRKYFIEASPLP-------SSYPGKTALRVKWSHLRLPWVDLDWLIDISCQITELDLSANCLATLPSVIPWGLINLRKLNLSDNHLGELPGVQSSDEIICSRLLEIDISSNKLSHLPPGFLHLSKLQKLTASKNCLEKLFEEENATNWIGLRKLQELDISDNKLTELPALFLHSFKSLNSLNVSRNNLKVFPDPWACPLKCCKASRNALECLPDKMAVFWKNHLKDVDFSENALKEVPLGLFQLDALMFLRLQGNQLAALPPQEKWTCRQLKTLDLSRNQLGKN--EDG---LKTKRIAFFTTRGRQRSGTEAASVLEFPA-FLSESLEVLCLNDNHLDTVPPSVCLLKSLSELYLGNNPGLRELPPELGQLGNLWQLDTEDLTISNVPAEIQKEGPKAMLSYLRAQLRKAEKCKLMKMIIVGPPRQGKSTLLEILQTGRAPQVVHGEATIRTTKWELQRPAGSRAKVES-----VEFNVWDIGGPASMATVNQCFFTDKALYVVVWNLALGEEAVANLQFWLLNIEAKAPNAVVLVVGTHLDLIEAKFRVERIATLRAYVLALCRSPSGSRATGFPDITFKHLHEISCKSLEGQEGLRQLIFHVTCSMKDVGSTIGCQRLAGRLIPRSYLSLQEAVLAEQQRRSRDDDVQYLTDRQLEQLVEQTPDNDIKDYEDLQSAISFLIETGTLLHFPDTSHGLRNLYFLDPIWLSECLQRIFNIKGSRSVAKNGVIRAEDLRMLLVGTGFTQQTEEQYFQFLAKFEIALPVANDSYLLPHLLP-SKPGLDTHGMRHP---------------TANTIQRVFKMSFVPVGFWQRFIARMLISLAEMDLQLFENKKNTKSRNRKVTIYSFTGNQRNRCSTFRVKRNQTIYWQEGLLVTFDGGYLSVES---SDVNWKKKKSGGMKIVCQSEVRDFSAMAFITDHVNSLIDQWFPALTATESDGTPLMEQYVPCPVCETAWA----QHTDPSEKSEDVQY------------FDMEDCVLTAIERDFISCPRHPDLPVPLQELVPELFMTDFPARLFLENSKLEHSEDEGSVLGQGGSGTVIYRARYQGQPVAVKRFHIKKFKNF-----ANVPADTMLRHLRATD---AMKNFSEFRQEASMLHALQHPCIVALIGISIHPLCFALELAPLSSLNTVLSENARDSSFIPLGHMLTQKIAYQIASGLAYLHKKNIIFCDLKSDNILVWSLDVKEHINIKLSDYGISRQSFHEGALGVEGTPGYQAPEIRPRIVYDEKVDMFSYGMVLYELLSGQRPALGHH-QLQIAKKLSKGIRPVL-GQPEEVQFRRLQALMMECWDTKPEKRPLALSVVSQMKDPTFATFMYELCCGKQTAFFSSQGQEYT-----------------VVFWDGKEESRNYTVVNTEKGLMEVQRMCCPGMKVSCQLQVQRSLWTATEDQKIYIYTLKGMCPLNTPQQALDTPAVVTCFLAVPVIKKNSYLVLAGLADGLVAVFPVVRGTPKDSCSYLCSHTANRSKFSIADED--ARQ------NPYPVKAMEVVNSGSEVWYSNGPGLLVIDCASLEICRRL--EPYMAPSMVTSVVCSSEGRGEEVVWCLDDKANSLVMYHSTTYQLCARYFCGVPSPLR 1784 The following BLAST results are available for this feature:
BLAST of TCONS_00001140 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.