TCONS_00001126 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001126
Unique NameTCONS_00001126
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1278

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001126 ID=TCONS_00001126|Name=TCONS_00001126|organism=Clytia hemisphaerica|type=transcript|length=1278bp
aTTTTTAATGAAAGAAGGGAAAAAGATGAAGATAGTGTTAGATTGTAACT
GAAAACAAGATGGTGGAAAGAGGAGGTGTCAGGCGACCGATTACGTCATC
ATACCAAGAAGAAAGTGCAAGATTTGCTTCTgcagaaaatgaagatgaaa
atgagatGGGTGAAGTTATCAAGCAGAAATTGATGAAGTTCACCAGGCCA
CGAAAGTTACGTTCAAAAGACATTTTACTCGCTATCCAACCCAATGGAGA
AATCACCTCCACCAAAGACCCAGATAATCCTTATGCACTTCTACAAGTGA
TATCGATCAGTGCTAACATGATTGCCATGTGGGGGAAAGAAGCACAATTA
TATATGGCCGTCAACGAACTTGGTCAAGTCTACGCTACCGAGACAGAAGG
TCGTGATTGTGTCTTTGTGGAGTGTTTTACACCAGAGTTCTACAACACTT
ATGAAAGTTATCATTCAATAAACCATCCAACAGCTAAATATTACCTCACT
TTACCCACGCCTGGTGAATTGGTGCAAATGACACACGACATCACTCAAAC
ATCAACTTTTTATTGGGAAGTACCACAATTACATTATTCGAACATTCTAC
CATCTTCGTTGCCAATGACAACGAAAAATTCAATTAATAACAcaagaaaa
atggtcaaaaatgttGTTAGATGCACAAATATCGATCACCAGCTAGAAAG
ATGAGTAGTGGTAGTCCGCTGAACCATCCAATGTTCAATACGCCACCCAA
CGCGAGACTGTTGCTTAGACTTGTTCGGTAAAATAGACAAGGGGAAGCGT
ATCCAATCATTAGGAAGAGACACATACAATCTGCGATACCGAGACATCCA
GCGATCGTAAAATAAGTCTTGTCTTTAAACTTAGGACGTGTGAACACGAC
GAACATGAATAGAACGTACACCATGAGACCGAACAACGAAACGATGAGTA
GAAAGGCGCCACATATTTGACTGGTTTCTAACGAGAAGGCCAGATCTACC
GCCGTTGAGTTGTGATCCGCCATTGTTTCTCTGTTTCCTCGTCGAATAAA
CACCTAAAAGTTAGACAGAACAGAAAAATGACTTTTAgactttttatgat
tttattgaaGTTTAATCGATTGTAAAGTTTGTTTTAGAGTAGTAATTGTC
ACTTTTGATGTCTGATATATCCTTTTCAATTATACACTTTTAACCACTTC
ACTACATGACTTAGTAGATTTTAATATAAAACAAATTATTGTCATATCAA
CTCACTCAGAAATGATTTTGCGGAAAGT
Run BLAST on NCBI

transcript from alignment at sc0000007:479133..483549-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001126 ID=TCONS_00001126|Name=TCONS_00001126|organism=Clytia hemisphaerica|type=transcript|length=4417bp|location=Sequence derived from alignment at sc0000007:479133..483549- (Clytia hemisphaerica)
ATTTTTAATGAAAGAAGGGAAAAAGATGAAGGTTCGCTGAAGAAGGTTTT
CAATGTGCAACAGGCTGTTTTGTTTGTCGTTCACTCGCTCCTACATTTTC
CTTCCATTTCTAACATTTGAGAAATATTTTTTTATATGGTGTTTTATGAT
GTGTAGATCTCCAGTTAACCAAAAAAACATCTATGATTTTAATATTTCTT
TACTATACTATATATCTAGTTGGTTTTAGTGTTTTCTCTGTTTTATGAAT
AAAGAAACAAAATTTGTATCAGGATTCACTTGTTGTATTCATTCCATTCC
AGATAGTGTTAGATTGTAACTGAAAACAAGATGGTGGAAAGAGGAGGTGT
CAGGCGACCGATTACGTCATCATACCAAGAAGAAAGTGCAAGATTTGCTT
CTGCAGAAAATGAAGATGAAAATGAGATGGGTGAAGTTGTAAGTGCAAGA
AGATTCTTGCTTTTCACTTGAAAGTGGAGTGAAATTGTTTCACTAGATCT
CCTTTTGAAGTGAAGAAAATTCCTCTTCACCTAAAAATCGACTTTTAAGA
AGGTGACAAAACGAAGATGTTTTGGGAAGTATTATTTCATTCTCAGGGAG
GATTTCCTTCTGCTTTTTAATTTCAATTTTTGCTAGGAAAAAGTTATTCC
TATTTATATCACCTATTTTTGATAACCTTTTTCTGTTTTTTAGTTTCTCA
AGACACTTTAGATTCAGATTCTTTGAATTGATGTAGCTTTATGAATTTTA
GATCGATAATCTGGATAATCTGGATAATTTCCCCCCGTCAAAAGTTTTCC
ACACTTATCATTTGCAGATAAAAAAAAGAAGAAATTTTAGAATTAAAGAA
AACATGTTTATTTTGTGGGGACCATCTATTCCCTTCTTCGAATTTCATTT
TCAAATAAACTTCTATTTTTGTTGGTTCAACTGAATCAAATTCCATCCTT
CCCCTTCTTTTTGAACGTTCTTTTCATTTTTGAAAATCTCCCCACATGGT
GTTTATTGACAAGGTACTTCGTAAAAAGTGTAATCTCTTATTTTCCAAGC
CTGACTTACTGCTCGGATGGTTGTCCAGTCTTTAAGTATGAGCTCAACAA
TTAGATTGACTTTTTGGAAGTTTGAAAATGGTAATCTATGCTATCAGTTG
TTATTCTCTTAATTTTCTTGGAAATAATACATCCTTTCAATCTTTTTTGC
ACCGCAAGGCATTGACATTAAAAACGCTTGATATTCTTCGTTGATATTCT
TTTCCCTTTCCACTCTTCAGATCAAGCAGAAATTGATGAAGTTCACCAGG
CCACGAAAGTTACGTTCAAAAGACATTTTACTCGCTATCCAACCCAATGG
AGAAATCACCTCCACCAAAGACCCAGATAATCCTTATGGTAGGTAATATG
TACCATCGTTGGTTTGATTAAGAAGTTGGACTTTTCAACCCCTGTCTCGG
TAGATATTCAAACCAGCTTCATTTTGGGACGTAAGACATGAAAAACGATC
AGATAAAGCCTAAGTATATAAAGATCAAAACAAGAGACTTTATTTACCTT
TACGTTTTGATACTTACATTTCGATTACCCTTTTCTCCAACTCTCTATTT
TCATTTTTACTAATGTGAGTTGAGATCATTGAGAAATTAATGCATGGATG
ATTTTTTTCATGTGACATCTTAATATCTACTTCTTTCCATTAAAGCACTT
CTACAAGTGATATCGATCAGTGCTAACATGATTGCCATGTGGGGGAAAGA
AGCACAATTATATATGGCCGTCAACGAACTTGGTCAAGTCTACGCTACCG
TAAGTCTGACATTTAATTCATTAATCCACATTTAGTTCCTTCANCGCTAC
CGTAAGTCCACATTTTATTCATTAATCCACATTTAGTTCCTTCAAATATA
TACTCTGTAAAAGACCCCTGTCTCAATGCACTATGCATGTTCTTCGACAG
TTTTATGTGATCGTTGGACGTGGGATTAGGGCTTTGCCTGGAAATTAGTA
TCATCATTAAATTAGTATCATCATGCTAGCCAGCCTTTATTCACGAAGGA
AAAATAGCCTTCCATTGATCAAAAACATTTTTCTTTTTTTGACCCCCTCC
TCCCCTCCTCAAAGGGAAGTGAAATAATTGGTGCAAATTTCCTAGAATCA
TTTTTGAGAATGGGACTAAATTTTAAAACTAGGTAAAATTAAGACAAATA
ATCGTCAAAACTTTCTGATTTTACTTCCATTTTATACCCGACACCGCTTA
ACCTTATATATTTTCAGGAGACAGAAGGTCGTGATTGTGTCTTTGTGGAG
TGTTTTACACCAGAGTTCTACAACACTTATGAAAGTTATCATTCAATAAA
CCATCCAACAGCTAAATATTACCTCACTTTACCCACGCCTGGTGAATTGG
TGCAAATGACACACGACATCACTCAAACATCAACTTTTTATTGGGAAGTA
CCACAATTACATTATTCGAACATTCTACCATCTTCGTTGCCAATGACAAC
GAAAAATTCAATTAATAACACAAGAAAAATGGTCAAAAATGTTGTTAGGT
GATATTTGTTTCAAGAGTTTTATAAACGAGAGAAATCCAGGCAATTTCCT
TATTAATTGGAGGGAAGAGAAATCGAATGCAAATTTCTGAGGTTAGCCTA
CCAGAAAGACTGAGAAAGAGACTCTCAAACGGTCACTCCAAACACCAACA
TGACTTTTAGATATCATGAAAATTTCCAATAAACAGTTTTTGACAAACCT
TGCATTTTAACACACGCACGCATATATACAATTTGTAAAAAAAGTAACTA
AACAATAAAAAGATGTGTTCAATGCTAAAATCAATATACAAATAAATTCA
CAAGTTTTTCAAAACCCTCTCTTAATTAAGGATGGTATCCACCCTATGCG
GATGAAGTGTTGCCTTGTTTTAAACGGAAATTTTCCACCTCAGATTTTTT
AGTATCCTTTCGTTGTCTAACGATAGTTTTGCGACCTTGATCACTCATTT
CCGTATCTGCACGTATCCGATATCCACGCCGACAGATCTCTCGGATCTCA
CGTTTGACAGTTTTGTTCATGAAGCAATAAACCCATCCATTGATGGAGCA
ATTGATGGTGTAAGCTAACGTGACGAAATAACCCAACCAGTGTGACGGGT
TCTCAATGTAACCGATCGTGATGAAGGGTACATCAAACACCACCAACCAA
ATAGTGGTGATGAAGAATTGGATAAACACTTTACGTTCACGTGCGCTCTT
ACGCTGCTCGTGTACGGCGTCTAAAGACGTGTTACGTTGAGCTTCTCGAA
GTGCTCTGAAACGTAAACAAAAAGAATATGTTTGAACTACTTCTGGAGGA
AAAAACACGGATTAAATGGAATTCTGGAGTTCCATATCAGACTGATTTGT
CAAGGGAACTTTTCGATCCCTTGCAACCATAAACGAACAATAACCTCGGA
ATATGTTTTGGTGAAGAGAAAGTGTTATTATTTGACTGGCTGATGGTATT
TAATCAGATGAAAGAAACTATTCGTAGTTTAAAACGTAACATAATTTTTT
TTACCTGAAAACGAGGCCGTTGAGGAAGTAAGTGATTGATGTGATGATGA
CTACCATGGTTATTTCACCCAAAGCTAATGTTTTGGCGCCATCGAAGTCT
ATACTCCAGCCCCATGACATCAAGGTGTAATCGAAATGTAGAGAACAGCA
TGGGAAGAAGGAGGGGATGGAATAAGCAATACCAAACACCCAACATCCTA
TACAGTACATGTTCGTCAAACGTTTCTTGTAAAACCTGCTGTACAAATCT
TTGTTACAGATGCACAAATATCGATCACCAGCTAGAAAGATGAGTAGTGG
TAGTCCGCTGAACCATCCAATGTTCAATACGCCACCCAACGCGAGACTGT
TGCTTAGACTTGTTCGGTAAAATAGACAAGGGGAAGCGTATCCAATCATT
AGGAAGAGACACATACAATCTGCGATACCGAGACATCCAGCGATCGTAAA
ATAAGTCTTGTCTTTAAACTTAGGACGTGTGAACACGACGAACATGAATA
GAACGTACACCATGAGACCGAACAACGAAACGATGAGTAGAAAGGCGCCA
CATATTTGACTGGTTTCTAACGAGAAGGCCAGATCTACCGCCGTTGAGTT
GTGATCCGCCATTGTTTCTCTGTTTCCTCGTCGAATAAACACCTAAAAGT
TAGACAGAACAGAAAAATGACTTTTAGACTTTTTATGATTTTATTGAAGT
TTAATCGATTGTAAAGTTTGTTTTAGAGTAGTAATTGTCACTTTTGATGT
CTGATATATCCTTTTCAATTATACACTTTTAACCACTTCACTACATGACT
TAGTAGATTTTAATATAAAACAAATTATTGTCATATCAACTCACTCAGAA
ATGATTTTGCGGAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000630XLOC_000630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001126-exon-sc0000007-1575043694:483519..483549TCONS_00001126-exon-sc0000007-1575043694:483519..483549Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1575043694:483112..483247TCONS_00001126-exon-sc0000007-1575043694:483112..483247Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1575043694:482162..482279TCONS_00001126-exon-sc0000007-1575043694:482162..482279Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1575043694:481751..481854TCONS_00001126-exon-sc0000007-1575043694:481751..481854Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1575043694:481002..481282TCONS_00001126-exon-sc0000007-1575043694:481002..481282Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1575043694:479133..479740TCONS_00001126-exon-sc0000007-1575043694:479133..479740Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1510915933:483519..483549TCONS_00001126-exon-sc0000007-1510915933:483519..483549Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1510915933:483112..483247TCONS_00001126-exon-sc0000007-1510915933:483112..483247Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1510915933:482162..482279TCONS_00001126-exon-sc0000007-1510915933:482162..482279Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1510915933:481751..481854TCONS_00001126-exon-sc0000007-1510915933:481751..481854Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1510915933:481002..481282TCONS_00001126-exon-sc0000007-1510915933:481002..481282Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1510915933:479133..479740TCONS_00001126-exon-sc0000007-1510915933:479133..479740Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1491911889:483519..483549TCONS_00001126-exon-sc0000007-1491911889:483519..483549Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1491911889:483112..483247TCONS_00001126-exon-sc0000007-1491911889:483112..483247Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1491911889:482162..482279TCONS_00001126-exon-sc0000007-1491911889:482162..482279Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1491911889:481751..481854TCONS_00001126-exon-sc0000007-1491911889:481751..481854Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1491911889:481002..481282TCONS_00001126-exon-sc0000007-1491911889:481002..481282Clytia hemisphaericaexon
TCONS_00001126-exon-sc0000007-1491911889:479133..479740TCONS_00001126-exon-sc0000007-1491911889:479133..479740Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:479133..483549 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.196985	0.222643	0.485432	0.455019	0	0.101163	0.276924	0.135825	0.0311068	0.0255673	0	0.459045	1.77717	1.25433	3.16837	1.73165	0.0710166	0.384779	0.182018	0.684851	0.0666012	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001126 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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