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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001123 ID=TCONS_00001123|Name=TCONS_00001123|organism=Clytia hemisphaerica|type=transcript|length=2205bpRun BLAST on NCBI transcript from alignment at sc0000007:439248..459576- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001123 ID=TCONS_00001123|Name=TCONS_00001123|organism=Clytia hemisphaerica|type=transcript|length=20329bp|location=Sequence derived from alignment at sc0000007:439248..459576- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00001123 vs. Swiss-Prot (Human)
Match: ARHG8 (Neuroepithelial cell-transforming gene 1 protein OS=Homo sapiens GN=NET1 PE=1 SV=1) HSP 1 Score: 338.576 bits (867), Expect = 1.416e-105 Identity = 162/376 (43.09%), Postives = 245/376 (65.16%), Query Frame = 2 Query: 311 SQRKQRKTSCVTPARRRGSKLWVDSFEYDESDGWTPQQIKRQEAIYELYCGETDMVEDLKLLQEVYFNPVAKLKLLTEEDLASIFGNIQVLLPLHEDLVKRLEEVRTENGSIEEIGRILTEWIPTLRPYIPYCANQLQMKNMLLHKTKENKHFSDFLQRCLESPFSRKLDLWSFLDSPRSKLVKYPLLISNMHKYTPKEHPDNIILYQAIQELEVIIKEADKATGKSKSSFYKDRMYFLDEGDHREALSQAQVLLCHGSLKNKNGGKIEAFLFDTVFLITRPASRNGMEMYQVLSQPLLTNDMEYANVSDGELRLGGSFRSSLTKGPTAKFAFRVNPKELTRGKSIILQANDQHDKKQWLNAL-SKVASMPSKGDP 1435
+Q+ +++ TPA+RR S LW + + + T ++I+RQEAIYE+ GE D++EDLKL ++ Y +P+ KL +++EE+L IFG++ +PLHEDL+ R+ E +G++E+IG IL W+P L Y YC+NQL K LL + K++ DFLQRCLESPFSRKLDLWSFLD PRS+LVKYPLL+ + K+TPKEHPD +L AI ++ ++ + + G+S+ +Y D++ +LDE + ++VLLCHG L++K+G K+ FLF + ++TRP +RN YQV QP+ ++ ++ DG++R+GGSFR + + AK FR+ + + +S LQAND K+QW N + + +A S G P
Sbjct: 135 AQKFSSRSTVPTPAKRRSSALWSEMLDITMKESLTTREIRRQEAIYEMSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFGDLDSYIPLHEDLLTRIGEATKPDGTVEQIGHILVSWLPRLNAYRGYCSNQLAAK-ALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILKHTPKEHPDVQLLEDAILIIQGVLSDINLKKGESECQYYIDKLEYLDEKQRDPRIEASKVLLCHGELRSKSGHKLYIFLFQDILVLTRPVTRNERHSYQVYRQPIPVQELVLEDLQDGDVRMGGSFRGAFSNSEKAKNIFRIRFHDPSPAQSHTLQANDVFHKQQWFNCIRAAIAPFQSAGSP 509 The following BLAST results are available for this feature:
BLAST of TCONS_00001123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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TCONS_00001123 (transcript) - C. hemisphaerica
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Overview
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