Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001122 ID=TCONS_00001122|Name=TCONS_00001122|organism=Clytia hemisphaerica|type=transcript|length=2871bpRun BLAST on NCBI transcript from alignment at sc0000007:439248..459555- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001122 ID=TCONS_00001122|Name=TCONS_00001122|organism=Clytia hemisphaerica|type=transcript|length=20308bp|location=Sequence derived from alignment at sc0000007:439248..459555- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Blast
BLAST of TCONS_00001122 vs. Swiss-Prot (Human)
Match: ARHG8 (Neuroepithelial cell-transforming gene 1 protein OS=Homo sapiens GN=NET1 PE=1 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 1.877e-84 Identity = 136/298 (45.64%), Postives = 201/298 (67.45%), Query Frame = 2 Query: 290 SQRKQRKTSCVTPARRRGSKLWVDSFEYDESDGWTPQQIKRQEAIYELYCGETDMVEDLKLLQEVYFNPVAKLKLLTEEDLASIFGNIQVLLPLHEDLVKRLEEVRTENGSIEEIGRILTEWIPTLRPYIPYCANQLQMKNMLLHKTKENKHFSDFLQRCLESPFSRKLDLWSFLDSPRSKLVKYPLLISNMHKYTPKEHPDNIILYQAIQELEVIIKEADKATGKSKSSFYKDRMYFLDEGDHREALSQAQVLLCHGSLKNKNGGKIEAFLFDTVFLITRPASRNGMEMYQVLSQVI 1183 +Q+ +++ TPA+RR S LW + + + T ++I+RQEAIYE+ GE D++EDLKL ++ Y +P+ KL +++EE+L IFG++ +PLHEDL+ R+ E +G++E+IG IL W+P L Y YC+NQL K LL + K++ DFLQRCLESPFSRKLDLWSFLD PRS+LVKYPLL+ + K+TPKEHPD +L AI ++ ++ + + G+S+ +Y D++ +LDE + ++VLLCHG L++K+G K+ FLF + ++TRP +RN YQV Q I Sbjct: 135 AQKFSSRSTVPTPAKRRSSALWSEMLDITMKESLTTREIRRQEAIYEMSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFGDLDSYIPLHEDLLTRIGEATKPDGTVEQIGHILVSWLPRLNAYRGYCSNQLAAK-ALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILKHTPKEHPDVQLLEDAILIIQGVLSDINLKKGESECQYYIDKLEYLDEKQRDPRIEASKVLLCHGELRSKSGHKLYIFLFQDILVLTRPVTRNERHSYQVYRQPI 431 The following BLAST results are available for this feature:
BLAST of TCONS_00001122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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