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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001115 ID=TCONS_00001115|Name=TCONS_00001115|organism=Clytia hemisphaerica|type=transcript|length=3048bp
AAGCTTTGCCAATTGCAAACAAAATGGCTGCCATATTTACAAACTCGAAC
ATCTTAATTTTAATGGAAAGAATGTGAAAGGACGAAGAATGTGTATGGAA
TCATAAAGCAGCATgaaattaactgaaattttGCTCAGCCTTCTATTACT
AACAGTGGGTAGTTTCCGATGCAAAGAGAAGAGCAGGAGACCTCACATCA
CAAATAATGCCAGTTTGAAAGGGAATGTCAAAACAAGTGACCATTCCAAA
CGACAGACCATACATGGCCAAACTCACCCGAAGAAAAAGCTAGTCAACGA
AGAAGAAACATTTCTTCGTGGCTTTCTGAATGACGTAAAAGAGTTGAGTA
GTAGTGGTGAGCAggacaaaaatatatttgaattaTCCAGGACTTTGCAT
TCAGATACATTTTATAAGGCGTTGGACGAGAAGAAAATCAAAGTATCCTA
CCATCCAACGAAAGAGAGGGAAGCCAAAAAGAGGAAAATCAAACATCCAG
CCCCGCTCCTAAAACACCCAACCAAAGTGGTAGCAGctcaaacaaaatca
acttCAGTAAAACcagtaaacaaaaatattgcTTCAACAATATCAAATAA
ACAAACCAATTCTACCCAATATTCACACAAAATCGCCAGGAAACAAGCCA
TCGAAAAAGAACTTCATTTCCTTGAATATCTAAATCATAAATCACCAGAA
GCAAAGAATATAGATAACCACAACAAACGAGAGAATATCACTGTTCATAA
CTCTGTCCAAACCAGTGCCAAGTTAGATGGCGTCAAACTTGGGAAGCGAT
TTGATATTGCGACAAAAGATTTCAAACGAGAGAATATCACAGTTCATAAT
TCAGTAAAGAGCACTGCAAAGCTAGATGGAGTTTCTCTTGGAAAAAGACA
AcacattttgaaattgaaagttcaaGATCCAGTCTTTTCCAAGCGGGAGA
ACATTTCGATTCATAATGCAGTCAAAAGCAGCGCTAAATTAGACACAGTT
CCTCTGCATGCTCCAGGTTCGCAGAAGAGGCTTTTGAAAGATGTTTCAGC
TCAAAACAAAGATGATAAAAGACAATCAAAATCAATCGGCAATTTGCTTC
CTCAAAAATCAGTAATCCCACTAAATAAAAACAGCTTACAGCAAGAAACA
CCGATTGTTGACGGCAATATCAAAAGAGAAAACATCTCAGTTCACAACTC
CGTTCAAAGTAGTGCAAAATTAGATGGAGTCAAACTCGGAAAGCGTGGCA
ATATCAAAACCCAGACAGTAAATGTGCTCAACCAGAGAGCTATAGCACCG
CAAATTCTCACAAAACGTGAAAATATAACAGTTCACAACTCAGTAAAAAG
TACGGCGAAATTAGACGGGGTATCTCTCGGTAAAAGACAAAATATAGCTA
AATCATTCACCAAGCGAGAAAATGGAACGGTTCATGACCCAGTGAAAATT
ACAGGGAATATGGATGGTCTTTCCATAGGCAAAAGCAAAAGGCAAAAGTT
AACCAAAGCAGAAAAGTCTCTTAGCCAAATTAAGAACCAAATAAAAAGTA
GGTCAGTGTCGGTAAACCAGAGACGTGATAAATCACCATCTTTTAGTGCA
GTGTCCAAGAAAACTGTAAGTGAAGCAGATAACACAAATGTCTCTATAAA
AAAGAGCACTACGACGTCCAACGCGATGCCAGAGTTGAACAGCAAAATAA
CTTCTGGTCAAAAGCAACCCAACCTCCAAGCAGAGATGGAGATGTTCAAT
CAAATCACAGAAACTCCTTTCGACCAAATGGAATTGAGTGAAAACATGGG
TTCTGTCGTAACCCAAGCTAAGATGCCGGAattgaaaacgaagaagaaaa
aaggcACAGTGGTAAACGAAAATACAACAAAGAAGTTGAAGAATGAAATG
AAAACACCGACTCTTAAAAGCTTCATAGGACCTATCGGTGTCACCTCACG
AATGGTTGGCTCGATGAAGAAAACAAACCACAACAATATAACACAGGCTC
ATCCTTACCAAAGACATACAATCACACCCGCACGTGTTCCAACTGTAACc
cgatcgggaaatcggaataCATCAATGGCAGATTCCTCTACGATAAGCCG
TAAATCTGATCTCGTGTCTGGGCAAAGAAGAAAGAACACTGTAGTTTCGT
CATCTCAGGAAGCGGAACAATCGCTGAATACCGGTTCGTCTCGCTCAAGA
CAAAAAAGACAGATCAAACTTCTAGGGCAGAATACAAGACAAATAACAAC
GGACATTGCAAGTCAAGAtaagaatttcttttctttcttgaacCACGATT
CGCGAGACGAAATCAACGATCGGATCCAACAACACCAACAAACGAATGGA
GCAAATCACCAACCTGAATATATCAGCTCATTCAAAGATAACTTTGCAGC
TGAAAAGAACGTGTTACCAGTGCGTTCGAACTCTACTGGAGGGtttgatg
atgaagatgaaaatgaagggACACATTACTTTGACCCTGGTACTCCTCTG
CCACAGGCCAACAGTGAGGAGGAGGATCAACCTGCCGAAGGGCGGTCCAC
TTCCAAACCAACACGACATGGGGATGGAGGGCACGGTGATTGGTGGAAGG
ACTATTTCCCACACCATGGAACATGGGATGATCCTAACCACGTCTATGGA
GATGCTCAGATGGTCCACCATGTCCCTTGGAATGCCATGTTTCCTCGCCA
CAGCTACCTTCCACATGAAGACCTTTTGAATCATCAGCAACATTCTTACA
TGGGGAACCAATTTCACCATTCATACGAGCGCCATAATCCAAAACAGAAC
CCAGGTTTTCTTGGAGCGAGCCCAGCGAGTGCAGAAGTCAATTTCTACGA
TGGTTCCTTAGTGGAAGGGGCCCCACGCAAAACTCACAGACATGGTCACC
CTTATGGACACAACACACCATATCTTGCTGGTGACGGAATGGAGTCGGAC
CATGAAGGAGCGAACGAAGATGAGGGTGATGGAAGAGAGGATGTCGTTGA
AAGTGTTCATGGTGATCTCTGTGTAGAGAAACGAGATGGAATATGCTC Run BLAST on NCBI transcript from alignment at sc0000007:353498..357408- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001115 ID=TCONS_00001115|Name=TCONS_00001115|organism=Clytia hemisphaerica|type=transcript|length=3911bp|location=Sequence derived from alignment at sc0000007:353498..357408- (Clytia hemisphaerica)
AAGCTTTGCCAATTGCAAACAAAATGGCTGCCATATTTACAAACTCGAAC
ATCTTAATTTTAATGGAAAGAATGTGAAAGGACGAAGAATGTGTATGGAA
TCATAAAGCAGCATGAAATTAACTGAAATTTTGCTCAGCCTTCTATTACT
AACAGGTAAGGAAAGGTATCAATCTTCAGCACGTAATGCAAATACCAAAT
ATTACTGGAAAATGATGCTGGAATATCATGCAATTATTAAAGGTCAATAT
GGCGAAGACTAGAGTTTCATTGAGAACCTACATAGATTTAAGGGATGTTT
TTAGGAGACATCTGTAAATGAGATTTTGTCATTCTTTTTTAGTGGGTAGT
TTCCGATGCAAAGAGAAGAGCAGGAGACCTCACATCACAAATAATGCCAG
TTTGAAAGGGAATGTCAAAACAAGTGACCATTCCAAACGACAGACCATAC
ATGGCCAAACTCACCCGAAGAAAAAGCTAGTCAACGAAGAAGAAACATTT
CTTCGTGGCTTTCTGAATGACGTAAAAGAGTTGAGTAGTAGTGGTGAGCA
GGACAAAAATATATTTGAATTATCCAGGACTTTGCATTCAGATACATTTT
ATAAGGCGTTGGACGAGAAGAAAATCAAAGTATCCTACCATCCAACGAAA
GAGAGGGAAGCCAAAAAGAGGAAAATCAAACATCCAGCCCCGCTCCTAAA
ACACCCAACCAAAGTGGTAGCAGCTCAAACAAAATCAACTTCAGTAAAAC
CAGTAAACAAAAATATTGCTTCAACAATATCAAATAAACAAACCAATTCT
ACCCAATATTCACACAAAATCGCCAGGAAACAAGCCATCGAAAAAGAACT
TCATTTCCTTGAATATCTAAATCATAAATCACCAGAAGCAAAGAATATAG
ATAACCACAACAAACGAGAGAATATCACTGTTCATAACTCTGTCCAAACC
AGTGCCAAGTTAGATGGCGTCAAACTTGGGAAGCGATTTGATATTGCGAC
AAAAGATTTCAAACGAGAGAATATCACAGTTCATAATTCAGTAAAGAGCA
CTGCAAAGCTAGATGGAGTTTCTCTTGGAAAAAGACAACACATTTTGAAA
TTGAAAGTTCAAGATCCAGTCTTTTCCAAGCGGGAGAACATTTCGATTCA
TAATGCAGTCAAAAGCAGCGCTAAATTAGACACAGTTCCTCTGCATGCTC
CAGGTTCGCAGAAGAGGCTTTTGAAAGATGTTTCAGCTCAAAACAAAGAT
GATAAAAGACAATCAAAATCAATCGGCAATTTGCTTCCTCAAAAATCAGT
AATCCCACTAAATAAAAACAGCTTACAGCAAGAAACACCGATTGTTGACG
GCAATATCAAAAGAGAAAACATCTCAGTTCACAACTCCGTTCAAAGTAGT
GCAAAATTAGATGGAGTCAAACTCGGAAAGCGTGGCAATATCAAAACCCA
GACAGTAAATGTGCTCAACCAGAGAGCTATAGCACCGCAAATTCTCACAA
AACGTGAAAATATAACAGTTCACAACTCAGTAAAAAGTACGGCGAAATTA
GACGGGGTATCTCTCGGTAAAAGACAAAATATAGCTAAATCATTCACCAA
GCGAGAAAATGGAACGGTTCATGACCCAGTGAAAATTACAGGGAATATGG
ATGGTCTTTCCATAGGCAAAAGCAAAAGGCAAAAGTTAACCAAAGCAGAA
AAGTCTCTTAGCCAAATTAAGAACCAAATAAAAAGTAGGTCAGTGTCGGT
AAACCAGAGACGTGATAAATCACCATCTTTTAGTGCAGTGTCCAAGAAAA
CTGTAAGTGAAGCAGATAACACAAATGTCTCTATAAAAAAGAGCACTACG
ACGTCCAACGCGATGCCAGAGTTGAACAGCAAAATAACTTCTGGTCAAAA
GCAACCCAACCTCCAAGCAGAGATGGAGATGTTCAATCAAATCACAGAAA
CTCCTTTCGACCAAATGGAATTGAGTGAAAACATGGGTTCTGTCGTAACC
CAAGCTAAGATGCCGGAATTGAAAACGAAGAAGAAAAAAGGCACAGTGGT
AAACGAAAATACAACAAAGAAGTTGAAGAATGAAATGAAAACACCGACTC
TTAAAAGCTTCATAGGACCTATCGGTGTCACCTCACGAATGGTTGGCTCG
ATGAAGAAAACAAACCACAACAATATAACACAGGCTCATCCTTACCAAAG
ACATACAATCACACCCGCACGTGTTCCAACTGTAACCCGATCGGGAAATC
GGAATACATCAATGGCAGATTCCTCTACGATAAGCCGTAAATCTGATCTC
GTGTCTGGGCAAAGAAGAAAGAACACTGTAGTTTCGTCATCTCAGGAAGC
GGAACAATCGCTGAATACCGGTTCGTCTCGCTCAAGACAAAAAAGACAGA
TCAAACTTCTAGGGCAGAATACAAGACAAATAACAAGTGAGTCAATATTT
CAACATCTATTTGAGAAAAAGTGTCAATAATGTCAATGCTTATAGATCAA
AATACACAAAACGTTTAGAATGTTTTTAAAAGGGCACAAAATGACGCACC
TCTTTCCAAAAAACTGAAAGATTCTAATTTGGACTGACAGTAATAACTTT
CAGCTACAAGGGAAAAAAACTTCACTGATTTAATCACAATTCAAAGAAAT
GTCCTTGCTGATAGATAGACTGACTGAAAATTACTGAAAGCTAATTAAAA
AAAGTTCATAAACAAATTTGTTTGAACACGTTATTGACTTGGCATACATA
TATAGAATTTCACAGAAATGACTTGCTCAATTCGAATATTAGGGAGATAA
AAATCCTGACCGTGTGATTCATTGAGATTAGTTGAATTCTTAACATTCCA
TGGACAGACAATAAGAATGATGAAGTATAAAGCGTTAACAATTACTTAAC
AATGACTGAAAACAGAGCTACCGTTACTTTCAACATTAAGCAATAAGTGA
GCAACCCAAGGCACTTTTTGATCTTATAAATATGTTCTTTCAGCGGACAT
TGCAAGTCAAGATAAGAATTTCTTTTCTTTCTTGAACCACGATTCGCGAG
ACGAAATCAACGATCGGATCCAACAACACCAACAAACGAATGGAGCAAAT
CACCAACCTGAATATATCAGCTCATTCAAAGGTAAGTAAACCATATTCAT
AATGAAGGAAATGACTTTAACAGCCAAATATAGGTAGCAGAACTCGAAGA
AGCGAGATATTATCTATCCTTGTTCAGTCTAAACACCCCTTCCTTTTCAG
ATAACTTTGCAGCTGAAAAGAACGTGTTACCAGTGCGTTCGAACTCTACT
GGAGGGTTTGATGATGAAGATGAAAATGAAGGGACACATTACTTTGACCC
TGGTACTCCTCTGCCACAGGCCAACAGTGAGGAGGAGGATCAACCTGCCG
AAGGGCGGTCCACTTCCAAACCAACACGACATGGGGATGGAGGGCACGGT
GATTGGTGGAAGGACTATTTCCCACACCATGGAACATGGGATGATCCTAA
CCACGTCTATGGAGATGCTCAGATGGTCCACCATGTCCCTTGGAATGCCA
TGTTTCCTCGCCACAGCTACCTTCCACATGAAGACCTTTTGAATCATCAG
CAACATTCTTACATGGGGAACCAATTTCACCATTCATACGAGCGCCATAA
TCCAAAACAGAACCCAGGTTTTCTTGGAGCGAGCCCAGCGAGTGCAGAAG
TCAATTTCTACGATGGTTCCTTAGTGGAAGGGGCCCCACGCAAAACTCAC
AGACATGGTCACCCTTATGGACACAACACACCATATCTTGCTGGTGACGG
AATGGAGTCGGACCATGAAGGAGCGAACGAAGATGAGGGTGATGGAAGAG
AGGATGTCGTTGAAAGTGTTCATGGTGATCTCTGTGTAGAGAAACGAGAT
GGAATATGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001115-exon-sc0000007-1575043694:357254..357408 | TCONS_00001115-exon-sc0000007-1575043694:357254..357408 | Clytia hemisphaerica | exon |
| TCONS_00001115-exon-sc0000007-1575043694:354973..357066 | TCONS_00001115-exon-sc0000007-1575043694:354973..357066 | Clytia hemisphaerica | exon |
| TCONS_00001115-exon-sc0000007-1575043694:354278..354415 | TCONS_00001115-exon-sc0000007-1575043694:354278..354415 | Clytia hemisphaerica | exon |
| TCONS_00001115-exon-sc0000007-1575043694:353498..354158 | TCONS_00001115-exon-sc0000007-1575043694:353498..354158 | Clytia hemisphaerica | exon |
| TCONS_00001115-exon-sc0000007-1510915933:357254..357408 | TCONS_00001115-exon-sc0000007-1510915933:357254..357408 | Clytia hemisphaerica | exon |
| TCONS_00001115-exon-sc0000007-1510915933:354973..357066 | TCONS_00001115-exon-sc0000007-1510915933:354973..357066 | Clytia hemisphaerica | exon |
| TCONS_00001115-exon-sc0000007-1510915933:354278..354415 | TCONS_00001115-exon-sc0000007-1510915933:354278..354415 | Clytia hemisphaerica | exon |
| TCONS_00001115-exon-sc0000007-1510915933:353498..354158 | TCONS_00001115-exon-sc0000007-1510915933:353498..354158 | Clytia hemisphaerica | exon |
| TCONS_00001115-exon-sc0000007-1491911889:357254..357408 | TCONS_00001115-exon-sc0000007-1491911889:357254..357408 | Clytia hemisphaerica | exon |
| TCONS_00001115-exon-sc0000007-1491911889:354973..357066 | TCONS_00001115-exon-sc0000007-1491911889:354973..357066 | Clytia hemisphaerica | exon |
| TCONS_00001115-exon-sc0000007-1491911889:354278..354415 | TCONS_00001115-exon-sc0000007-1491911889:354278..354415 | Clytia hemisphaerica | exon |
| TCONS_00001115-exon-sc0000007-1491911889:353498..354158 | TCONS_00001115-exon-sc0000007-1491911889:353498..354158 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:353498..357408 - |
Blast
The following BLAST results are available for this feature:
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