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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001110 ID=TCONS_00001110|Name=TCONS_00001110|organism=Clytia hemisphaerica|type=transcript|length=3433bp
ATTGCAAGTCAAGAtaagaatttcttttctttcttgaacCACGATTCGCG
AGACGAAATCAACGATCGGATCCAACAACACCAACAAACGAATGGAGCAA
ATCACCAACCTGAATATATCAGCTCATTCAAAGGAACTCGAAGAACTCAA
GAAAACAATCACGATGTTGAGCATCACGAACATCACGATCACACACATGA
ACATGTAGATCACCATCACGACCACGCCCATCATCACCACCATCACCATG
ACGACCATGAAACAGATCACCATGACGACGAAGGTGATGGAGACGTAGAA
TACCATGATGATGGTGAAGGAGAGCAAAGTTATTACGGTGACCATGGTAA
CGGTGGAGGATATGGAGGGCATCACGATGGTTGTCATGATCACCATGACG
ACTGTCACCATGAAGACGTGCATCATCACCATGACCACCACCACCATCAT
CACGAGCACGTTCATCACGACCACGAACACCACCATCATCACCATCATCA
CGACCATCACGACCATCATCATGATCACCATCACCATGACGACCACGGTC
ACTATGGAGGGTATGGTGTGCACCACCGCTCCACAACAGAAGAAAGCATG
GTGGAATTTCAACGCAACCCATTAGATCCACACAGTGTGGACATCAGTGA
TCATCATGATCAGGACGAACATCACCACGAAGCTCTCATCTCACCCATAC
CTCAAGCTGTTGAACAAATCGCTGTCGATCCTTCCAATCACGTCCACTAC
TTGTCACGTGATGACTTGCATGATCTACATTATGATAACGGACTACTTCA
ACATCACGATATTGAACGGTTTCACGATGACGACCATCACCATGACGACC
ATGAAACCGAACACCATTACCATGACGACGATCACGAGGATCACCATGGA
GACGAGCACCATTACCATGACGACCATCACGATGATCACCATGGAGATGA
ACACCATAACAGCCACCATGAACATCACCATGACGACCATCATGATCAAG
GGgattgatttgtttttcttcaCAACAGATACGTAAAACATCACAATCCT
CACCAATACGAACACCATGAATTGGACCATCCAGCACGTGATCATTACCA
TCAGACGACTGACCATGGAAGTTTTCATGGATCTCACCATGGCAACGATG
ATCACCATGATGATGATTTGTATTACGAGCATGAGCACACTTTCCCTACA
CCTTTGCACCAGTCATACCACACACCTTTATTCGCACCACCACAAAGAGA
ACTTCCCATGTTTCAAGTCCGATATCCTCACCATGATGATGAATACCATG
ACCATCATCACCGAAGAACTAACATCCAAGACCACAACAACAACTTTCAA
CCGCTCATAAAGAGAATAATCAACAGTCTGAACATTGAAATTGTTGAtat
caagaaaaaataaaatcgagATTTTTGAATTCTTCTGTTGCAGACATCGA
ACAAATATGGTTGGTCGTATTTTTCGAATAATACTTTAACAGTGTTAAGA
CAACCTATGATACAGAGGCTTCTTTGTCGCAACCTTCTGCAAAAATAATG
AACTATGGATATTTAATTTCATGTTGTCATGAATTTCGATTGATACATGT
AATTCTtctggaaaaaaagaagagaatgaaAATTAACCTATGCACATGGT
GTTTAGTCCAAAACAAGATTTATGTAACATAGAAATAATAAATTATAAGA
TTTGTCAAATCTATTTACAGGGGTTGATCTACTTTAGATcggttattttt
ttaaagaaaaaattataaatacaaaaaacagttttttgggcTTTCTCTGA
AAAGAGTCAAACAATTTACAATTTCACGCATTACTGTGGGATTCTTAAAA
TTGATAATTAGCGTAAGGGATAAGGTCATATTTTAGCATATGAATTAGCA
AATTGTAacacatgaaaaaatattttaaaagttccCTATCTGATAACTTA
AGTTAGGTAAACAGCCAATATGTACATTCACTTGAGTAAGGGTGAACCTT
GTAATGTAatgactcttattataagaaTTCCCAGGCTgttaaaaatttac
ttttcatgaaaatatataaatatgagAATTTCtgtctaaaaaaataaaat
tactaTGTACATTGTCAATgcttaaagaaaatttcaaataacaCTATTGT
CGAAAAGCCAATCCCTACATTGCATTTCACAGTATATCTCCTGAATTTCG
AAACCTAACTATAACTCCTATTTCTCCTAAATTCAaattaatacactctt
ctcgagatgcataaatttattgttgccctcgttttcaaacagattttatt
gctataaaattacatattcacaatgataattgtgttgttcacacctcatg
agacattttgaatttcaagtacttttgttgccttttgggaatttaaattg
gtttaaatgtataatttcatagcaatgaaatgtgttgaaaacgaggacaa
caataaatttatgcatctcgagaagagcgTATTGGTACAGtaaaaatttc
gtgaaaatgcaaaacaacatttttacaaaaacattACTGAAAGAGGAATC
TAATAAATCGGATCAGAACCCAAAACCTAAATGCCGCATTACCTCGCACC
ATAAAGTAAATGGAAACCTTGCTATGCTTTTTCCTTAATATTTGAGCACT
GGATATTTTATATAGATGCAGAAATGGCTCATATATTAGTTAGTTGGAAT
ACTAAAAGGATATGTTTATTATCATGTATCTcagtgtttttctttaaaac
ctGTATTATGGGGGAAAGCATGTAAGCATTAGTAAATAGTATTCAATGAT
CCCTAAAAACGAAACAAAACACCAACAAAAAAGCGACGATAATCAGCTTA
AGATGTTATCCCCCGTCCCATCAAATGATGACTAATGATGACTATTGAAT
ATTGGACGGGAACTGTCAATTTTAACATATACTCAAATACAAGTATTTTC
TGCGTTCGACGAGAAATGAAGAGTGGCTACCCTTTTCTAGATTCGAGTCG
TATTCCGGGCAGTTCGTTATCATTTTGTGCGTGTCAGAATGTGACATTAG
TTAGTACACCAGTCAATAGAGTAGCAAACTTTTTATTCGGAATTTTTTCA
CCGCTCACCTTATAATGATACGAAATCGTATTCTATTACCACCACCCCCG
CCACCACCACCGCCTccattttcatcatcatcatcatctccGTCGTCACT
ACTGAAAGAGTCCTCATCGCTGGAAAATGTTCGATgctttttcaatgaaa
ctggcTTAGGGTGGTTGGCGTCGCGAAAATATCGCAAATATTTGATCAAT
ATTCTAGGTAATGGTAAGTCATCTAAAATATCTAGTTGAGCGAAGGAGAT
TTCATCTTCGGGTGCGGTCAAAGTGAAGACACTTTGTAGAATGATTTGAC
GAGAAAGTTCTTTCAGTGTTGGTGGTTGTGTAT Run BLAST on NCBI transcript from alignment at sc0000007:345099..350641- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001110 ID=TCONS_00001110|Name=TCONS_00001110|organism=Clytia hemisphaerica|type=transcript|length=5543bp|location=Sequence derived from alignment at sc0000007:345099..350641- (Clytia hemisphaerica)
ATTGCAAGTCAAGATAAGAATTTCTTTTCTTTCTTGAACCACGATTCGCG
AGACGAAATCAACGATCGGATCCAACAACACCAACAAACGAATGGAGCAA
ATCACCAACCTGAATATATCAGCTCATTCAAAGGTAAGTAAACCATATTC
ATAATGAAGGAAATGACTTTAACAGCCAAATATAGGTAGCAGAACTCGAA
GAAGCGAGATATTGTCTATCCTTGTTCAGTCTAAACACCCCTTCCTTTTC
AGATAACTTCGCAGCTGAAAAGAACGTGTTACCAGTGCGTTCAAACTCTA
CTGGAGGGTTTGATGATGAAGATGAAAATGAAGGGACACATTACTTTGAC
CCTGGTACTCCTCTGCCACAGGCCAACAGTGAGGAGGAGGATCAACCTGC
CGAAGGGCGGTCCACTTCCAAACCAACACGACATGGGGATGGAGGGCACG
GTGATTGGTGGAAGGACTATTTCCCACACCATGGAACATGGGATGATCCT
AACCACGTCTATGGAGATGCTCAGATGGTCCACCATGTCCCTTGGAATGC
CATGTTTCCTCGCCACAGCTACCTTCCACATGAAGACCTTTTGAATCATC
AGCAACATTCTTACATGGGGAACCAATTTCACCATTCATACGAGCGCCAT
AATCCAAAACAGAACCCAGGTTTTCTTGGAGCGAGCCCAGCGAGTGCAGA
AGTCAATTTCTACGATGGTTCCTTAGTGGAAGGGGCCCCACGCAAAACTC
ACAGACATGGTCACCCTTATGGACACAACACACCATATCTTGCTGGTGAC
GGAATGGAGTCGGACCATGAAGGAGCGAACGAAGATGAGGGTGATGGAAG
AGAGGATGTCGTTGAAAGTGTTCATGGTGATCTCTGTGTAGAGAAACGAG
ATGGAATATGCTCATATAGTGGTAAGTAGAGACGTAGTTCAAGAAACACC
ATCTTAGAACAAACTTATATTTTGAGGCCATTAGGATATTAGAAGGAAGT
CCTTCACCTTTGTAGCATTATTATCTTATCATTTCAGGAACTCGAAGAAC
TCAAGAAAACAATCACGATGTTGAGCATCACGAACATCACGATCACACAC
ATGAACATGTAGATCACCATCACGACCACGCCCATCATCACCACCATCAC
CATGACGACCATGAAACAGATCACCATGACGACGAAGGTGATGGAGACGT
AGAATACCATGATGATGGTGAAGGAGAGCAAAGTTATTACGGTGACCATG
GTAACGGTGGAGGATATGGAGGGCATCACGATGGTTGTCATGATCACCAT
GACGACTGTCACCATGAAGACGTGCATCATCACCATGACCACCACCACCA
TCATCACGAGCACGTTCATCACGACCACGAACACCACCATCATCACCATC
ATCACGACCATCACGACCATCATCATGATCACCATCACCATGACGACCAC
GGTCACTATGGAGGGTATGGTGTGCACCACCGCTCCACAACAGAAGAAAG
CATGGTGGAATTTCAACGCAACCCATTAGATCCACACAGTGTGGACATCA
GTGATCATCATGATCAGGACGAACATCACCACGAAGCTCTCATCTCACCC
ATACCTCAAGCTGTTGAACAAATCGCTGTCGATCCTTCCAATCACGTCCA
CTACTTGTCACGTGATGACTTGCATGATCTACATTATGATAACGGACTAC
TTCAACATCACGATATTGAACGGTTTCACGATGACGACCATCACCATGAC
GACCATGAAACCGAACACCATTACCATGACGACGATCACGAGGATCACCA
TGGAGACGAGCACCATTACCATGACGACCATCACGATGATCACCATGGAG
ATGAACACNAGCCCCACGCAAAACTCACAGCCACGGTCACCCCTATGGAC
ACAACACACCATATCTTGCTGGTGACGGAATGGAGTCGGACCATGAAGGA
GCGAACGAAGATGAGGGTGATGGAAGAGAGAATGTCGTTGAAAGTGTTCA
TGGTGATCTCTGTGTAGAGAAACGAGATGGAATATGCTCATACAGTGGTA
AGTAGAGACGTAGTTCAAGAAACACCATCTTAGAACAAACTTATATTTTG
AGGCCATCAGGATATTCGAAGGAAGTCCTTCACCTTTGTAGCATTATTAT
CTTATCATTTCAGGAACTCGAAGAACTCAAGAAAACAATCACGATGTTGA
GCATCACGAACATCACGATCACACACATGAACATGTAGATCACCATCACG
ACCACGCCCATCATCACCACCATCACCATGACGACCATGAAACAGATCAC
CATGACGACGAAGGTGATGGAGACGTAGAATACCATGATGATGGTGAAGG
AGAGCAAAGTTATTACGGTGACCATGGTAACGGTGGAGGATATGGAGGGC
ATCACGATGGTTGTCATGATCACCATGACGACTGTCACCATGAAGACGTG
CATCATCACCATGACCACCACCACCATCATCACGAGCACGTTCATCACGA
CCACGAACACCACCATCATCACCATCATCACGACCATCACGACCATCATC
ATGATCACCATCACCATGACGACCACGGTCACTATGGAGGGTATGGTGTG
CACCACCGCTCCACAACAGAAGAAAGCATGGTGGAATTTCAACGCAACCC
ATTAGATCCACACAGTGTGGACATCAGTGATCATCATGATCAGGACGAAC
ATCACCACGAAGCTCTCATCTCACCCATACCTCAAGCTGTTGAACAAATC
GCTGTCGATCCTTCCAATCACGTCCACTACTTGTCACGTGATGACTTGCA
TGATCTACATTATGATAACGGACTACTTCAACATCACGATATTGAACGGT
TTCACGATGACGACCATCACCATGACGACCATGAAACCGAACACCATTAC
CATGACGACGATCACGAGGATCACCATGGAGACGAGCACCATTACCATGA
CGACCATCACGATGATCACCATGGAGATGAACACCATAACAGCCACCATG
AACATCACCATGACGACCATCATGATCAAGGGTAAGTTTAACCTTTTGAA
CCTATCAAAACGTGTTTTAATTCACACAAAAGATCTATCTTCAACTACAC
ATTGTATAAAGGGATTGATTTGTTTTTCTTCACAACAGATACGTAAAACA
TCACAATCCTCACCAATACGAACACCATGAATTGGACCATCCAGCACGTG
ATCATTACCATCAGACGACTGACCATGGAAGTTTTCATGGATCTCACCAT
GGCAACGATGATCACCATGATGATGATTTGTATTACGAGCATGAGCACAC
TTTCCCTACACCTTTGCACCAGTCATACCACACACCTTTATTCGCACCAC
CACAAAGAGAACTTCCCATGTTTCAAGTCCGATATCCTCACCATGATGAT
GAATACCATGACCATCATCACCGAAGAACTAACATCCAAGACCACAACAA
CAACTTTCAACCGCTCATAAAGAGAATAATCAACAGTCTGAACATTGAAA
TTGTTGATATCAAGAAAAAATAAAATCGAGATTTTTGAATTCTTCTGTTG
CAGACATCGAACAAATATGGTTGGTCGTATTTTTCGAATAATACTTTAAC
AGTGTTAAGACAACCTATGATACAGAGGCTTCTTTGTCGCAACCTTCTGC
AAAAATAATGAACTATGGATATTTAATTTCATGTTGTCATGAATTTCGAT
TGATACATGTAATTCTTCTGGAAAAAAAGAAGAGAATGAAAATTAACCTA
TGCACATGGTGTTTAGTCCAAAACAAGATTTATGTAACATAGAAATAATA
AATTATAAGATTTGTCAAATCTATTTACAGGGGTTGATCTACTTTAGATC
GGTTATTTTTTTAAAGAAAAAATTATAAATACAAAAAACAGTTTTTTGGG
CTTTCTCTGAAAAGAGTCAAACAATTTACAATTTCACGCATTACTGTGGG
ATTCTTAAAATTGATAATTAGCGTAAGGGATAAGGTCATATTTTAGCATA
TGAATTAGCAAATTGTAACACATGAAAAAATATTTTAAAAGTTCCCTATC
TGATAACTTAAGTTAGGTAAACAGCCAATATGTACATTCACTTGAGTAAG
GGTGAACCTTGTAATGTAATGACTCTTATTATAAGAATTCCCAGGCTGTT
AAAAATTTACTTTTCATGAAAATATATAAATATGAGAATTTCTGTCTAAA
AAAATAAAATTACTATGTACATTGTCAATGCTTAAAGAAAATTTCAAATA
ACACTATTGTCGAAAAGCCAATCCCTACATTGCATTTCACAGTATATCTC
CTGAATTTCGAAACCTAACTATAACTCCTATTTCTCCTAAATTCAAATTA
ATACACTCTTCTCGAGATGCATAAATTTATTGTTGCCCTCGTTTTCAAAC
AGATTTTATTGCTATAAAATTACATATTCACAATGATAATTGTGTTGTTC
ACACCTCATGAGACATTTTGAATTTCAAGTACTTTTGTTGCCTTTTGGGA
ATTTAAATTGGTTTAAATGTATAATTTCATAGCAATGAAATGTGTTGAAA
ACGAGGACAACAATAAATTTATGCATCTCGAGAAGAGCGTATTGGTACAG
TAAAAATTTCGTGAAAATGCAAAACAACATTTTTACAAAAACATTACTGA
AAGAGGAATCTAATAAATCGGATCAGAACCCAAAACCTAAATGCCGCATT
ACCTCGCACCATAAAGTAAATGGAAACCTTGCTATGCTTTTTCCTTAATA
TTTGAGCACTGGATATTTTATATAGATGCAGAAATGGCTCATATATTAGT
TAGTTGGAATACTAAAAGGATATGTTTATTATCATGTATCTCAGTGTTTT
TCTTTAAAACCTGTATTATGGGGGAAAGCATGTAAGCATTAGTAAATAGT
ATTCAATGATCCCTAAAAACGAAACAAAACACCAACAAAAAAGCGACGAT
AATCAGCTTAAGATGTTATCCCCCGTCCCATCAAATGATGACTAATGATG
ACTATTGAATATTGGACGGGAACTGTCAATTTTAACATATACTCAAATAC
AAGTATTTTCTGCGTTCGACGAGAAATGAAGAGTGGCTACCCTTTTCTAG
ATTCGAGTCGTATTCCGGGCAGTTCGTTATCATTTTGTGCGTGTCAGAAT
GTGACATTAGTTAGTACACCAGTCAATAGAGTAGCAAACTTTTTATTCGG
AATTTTTTCACCGCTCACCTTATAATGATACGAAATCGTATTCTATTACC
ACCACCCCCGCCACCACCACCGCCTCCATTTTCATCATCATCATCATCTC
CGTCGTCACTACTGAAAGAGTCCTCATCGCTGGAAAATGTTCGATGCTTT
TTCAATGAAACTGGCTTAGGGTGGTTGGCGTCGCGAAAATATCGCAAATA
TTTGATCAATATTCTAGGTAATGGTAAGTCATCTAAAATATCTAGTTGAG
CGAAGGAGATTTCATCTTCGGGTGCGGTCAAAGTGAAGACACTTTGTAGA
ATGATTTGACGAGAAAGTTCTTTCAGTGTTGGTGGTTGTGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001110-exon-sc0000007-1575043694:350509..350641 | TCONS_00001110-exon-sc0000007-1575043694:350509..350641 | Clytia hemisphaerica | exon |
| TCONS_00001110-exon-sc0000007-1575043694:347611..348478 | TCONS_00001110-exon-sc0000007-1575043694:347611..348478 | Clytia hemisphaerica | exon |
| TCONS_00001110-exon-sc0000007-1575043694:345099..347530 | TCONS_00001110-exon-sc0000007-1575043694:345099..347530 | Clytia hemisphaerica | exon |
| TCONS_00001110-exon-sc0000007-1510915933:350509..350641 | TCONS_00001110-exon-sc0000007-1510915933:350509..350641 | Clytia hemisphaerica | exon |
| TCONS_00001110-exon-sc0000007-1510915933:347611..348478 | TCONS_00001110-exon-sc0000007-1510915933:347611..348478 | Clytia hemisphaerica | exon |
| TCONS_00001110-exon-sc0000007-1510915933:345099..347530 | TCONS_00001110-exon-sc0000007-1510915933:345099..347530 | Clytia hemisphaerica | exon |
| TCONS_00001110-exon-sc0000007-1491911889:350509..350641 | TCONS_00001110-exon-sc0000007-1491911889:350509..350641 | Clytia hemisphaerica | exon |
| TCONS_00001110-exon-sc0000007-1491911889:347611..348478 | TCONS_00001110-exon-sc0000007-1491911889:347611..348478 | Clytia hemisphaerica | exon |
| TCONS_00001110-exon-sc0000007-1491911889:345099..347530 | TCONS_00001110-exon-sc0000007-1491911889:345099..347530 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:345099..350641 - |
Blast
The following BLAST results are available for this feature:
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