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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001109 ID=TCONS_00001109|Name=TCONS_00001109|organism=Clytia hemisphaerica|type=transcript|length=4280bp
CTCGAAGAACTCAAGAAAACAATCACGATGTTGAGCATCACGAACATCAC
GATCACACACATGAACATGTAGATCACCATCACGACCACGCCCATCATCA
CCACCATCACCATGACGACCATGAAACAGATCACCATGACGACGAAGGTG
ATGGAGACGTAGAATACCATGATGATGGTGAAGGAGAGCAAAGTTATTAC
GGTGACCATGGTAACGGTGGAGGATATGGAGGGCATCACGATGGTTGTCA
TGATCACCATGACGACTGTCACCATGAAGACGTGCATCATCACCATGACC
ACCACCACCATCATCACGAGCACGTTCATCACGACCACGAACACCACCAT
CATCACCATCATCACGACCATCACGACCATCATCATGATCACCATCACCA
TGACGACCACGGTCACTATGGAGGGTATGGTGTGCACCACCGCTCCACAA
CAGAAGAAAGCATGGTGGAATTTCAACGCAACCCATTAGATCCACACAGT
GTGGACATCAGTGATCATCATGATCAGGACGAACATCACCACGAAGCTCT
CATCTCACCCATACCTCAAGCTGTTGAACAAATCGCTGTCGATCCTTCCA
ATCACGTCCACTACTTGTCACGTGATGACTTGCATGATCTACATTATGAT
AACGGACTACTTCAACATCACGATATTGAACGGTTTCACGATGACGACCA
TCACCATGACGACCATGAAACCGAACACCATTACCATGACGACGATCACG
AGGATCACCATGGAGACGAGCACCATTACCATGACGACCATCACGATGAT
CACCATGGAGATGAACACNAGCCCCACGCAAAACTCACAGCCACGGTCAC
CCCTATGGACACAACACACCATATCTTGCTGGTGACGGAATGGAGTCGGA
CCATGAAGGAGCGAACGAAGATGAGGGTGATGGAAGAGAGAATGTCGTTG
AAAGTGTTCATGGTGATCTCTGTGTAGAGAAACGAGATGGAATATGCTCA
TACAGTGGAACTCGAAGAACTCAAGAAAACAATCACGATGTTGAGCATCA
CGAACATCACGATCACACACATGAACATGTAGATCACCATCACGACCACG
CCCATCATCACCACCATCACCATGACGACCATGAAACAGATCACCATGAC
GACGAAGGTGATGGAGACGTAGAATACCATGATGATGGTGAAGGAGAGCA
AAGTTATTACGGTGACCATGGTAACGGTGGAGGATATGGAGGGCATCACG
ATGGTTGTCATGATCACCATGACGACTGTCACCATGAAGACGTGCATCAT
CACCATGACCACCACCACCATCATCACGAGCACGTTCATCACGACCACGA
ACACCACCATCATCACCATCATCACGACCATCACGACCATCATCATGATC
ACCATCACCATGACGACCACGGTCACTATGGAGGGTATGGTGTGCACCAC
CGCTCCACAACAGAAGAAAGCATGGTGGAATTTCAACGCAACCCATTAGA
TCCACACAGTGTGGACATCAGTGATCATCATGATCAGGACGAACATCACC
ACGAAGCTCTCATCTCACCCATACCTCAAGCTGTTGAACAAATCGCTGTC
GATCCTTCCAATCACGTCCACTACTTGTCACGTGATGACTTGCATGATCT
ACATTATGATAACGGACTACTTCAACATCACGATATTGAACGGTTTCACG
ATGACGACCATCACCATGACGACCATGAAACCGAACACCATTACCATGAC
GACGATCACGAGGATCACCATGGAGACGAGCACCATTACCATGACGACCA
TCACGATGATCACCATGGAGATGAACACCATAACAGCCACCATGAACATC
ACCATGACGACCATCATGATCAAGGATACGTAAAACATCACAATCCTCAC
CAATACGAACACCATGAATTGGACCATCCAGCACGTGATCATTACCATCA
GACGACTGACCATGGAAGTTTTCATGGATCTCACCATGGCAACGATGATC
ACCATGATGATGATTTGTATTACGAGCATGAGCACACTTTCCCTACACCT
TTGCACCAGTCATACCACACACCTTTATTCGCACCACCACAAAGAGAACT
TCCCATGTTTCAAGTCCGATATCCTCACCATGATGATGAATACCATGACC
ATCATCACCGAAGAACTAACATCCAAGACCACAACAACAACTTTCAACCG
CTCATAAAGAGAATAATCAACAGTCTGAACATTGAAATTGTTGAtatcaa
gaaaaaataaaatcgagATTTTTGAATTCTTCTGTTGCAGACATCGAACA
AATATGGTTGGTCGTATTTTTCGAATAATACTTTAACAGTGTTAAGACAA
CCTATGATACAGAGGCTTCTTTGTCGCAACCTTCTGCAAAAATAATGAAC
TATGGATATTTAATTTCATGTTGTCATGAATTTCGATTGATACATGTAAT
TCTtctggaaaaaaagaagagaatgaaAATTAACCTATGCACATGGTGTT
TAGTCCAAAACAAGATTTATGTAACATAGAAATAATAAATTATAAGATTT
GTCAAATCTATTTACAGGGGTTGATCTACTTTAGATcggttattttttta
aagaaaaaattataaatacaaaaaacagttttttgggcTTTCTCTGAAAA
GAGTCAAACAATTTACAATTTCACGCATTACTGTGGGATTCTTAAAATTG
ATAATTAGCGTAAGGGATAAGGTCATATTTTAGCATATGAATTAGCAAAT
TGTAacacatgaaaaaatattttaaaagttccCTATCTGATAACTTAAGT
TAGGTAAACAGCCAATATGTACATTCACTTGAGTAAGGGTGAACCTTGTA
ATGTAatgactcttattataagaaTTCCCAGGCTgttaaaaatttacttt
tcatgaaaatatataaatatgagAATTTCtgtctaaaaaaataaaattac
taTGTACATTGTCAATgcttaaagaaaatttcaaataacaCTATTGTCGA
AAAGCCAATCCCTACATTGCATTTCACAGTATATCTCCTGAATTTCGAAA
CCTAACTATAACTCCTATTTCTCCTAAATTCAaattaatacactcttctc
gagatgcataaatttattgttgccctcgttttcaaacagattttattgct
ataaaattacatattcacaatgataattgtgttgttcacacctcatgaga
cattttgaatttcaagtacttttgttgccttttgggaatttaaattggtt
taaatgtataatttcatagcaatgaaatgtgttgaaaacgaggacaacaa
taaatttatgcatctcgagaagagcgTATTGGTACAGtaaaaatttcgtg
aaaatgcaaaacaacatttttacaaaaacattACTGAAAGAGGAATCTAA
TAAATCGGATCAGAACCCAAAACCTAAATGCCGCATTACCTCGCACCATA
AAGTAAATGGAAACCTTGCTATGCTTTTTCCTTAATATTTGAGCACTGGA
TATTTTATATAGATGCAGAAATGGCTCATATATTAGTTAGTTGGAATACT
AAAAGGATATGTTTATTATCATGTATCTcagtgtttttctttaaaacctG
TATTATGGGGGAAAGCATGTAAGCATTAGTAAATAGTATTCAATGATCCC
TAAAAACGAAACAAAACACCAACAAAAAAGCGACGATAATCAGCTTAAGA
TGTTATCCCCCGTCCCATCAAATGATGACTAATGATGACTATTGAATATT
GGACGGGAACTGTCAATTTTAACATATACTCAAATACAAGTATTTTCTGC
GTTCGACGAGAAATGAAGAGTGGCTACCCTTTTCTAGATTCGAGTCGTAT
TCCGGGCAGTTCGTTATCATTTTGTGCGTGTCAGAATGTGACATTAGTTA
GTACACCAGTCAATAGAGTAGCAAACTTTTTATTCGGAATTTTTTCACCG
CTCACCTTATAATGATACGAAATCGTATTCTATTACCACCACCCCCGCCA
CCACCACCGCCTccattttcatcatcatcatcatctccGTCGTCACTACT
GAAAGAGTCCTCATCGCTGGAAAATGTTCGATgctttttcaatgaaactg
gcTTAGGGTGGTTGGCGTCGCGAAAATATCGCAAATATTTGATCAATATT
CTAGGTAATGGTAAGTCATCTAAAATATCTAGTTGAGCGAAGGAGATTTC
ATCTTCGGGTGCGGTCAAAGTGAAGACACTTTGTAGAATGATTTGACGAG
AAAGTTCTTTCAGTGTTGGTGGTTGTGTAT Run BLAST on NCBI transcript from alignment at sc0000007:345099..349601- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001109 ID=TCONS_00001109|Name=TCONS_00001109|organism=Clytia hemisphaerica|type=transcript|length=4503bp|location=Sequence derived from alignment at sc0000007:345099..349601- (Clytia hemisphaerica)
CTCGAAGAACTCAAGAAAACAATCACGATGTTGAGCATCACGAACATCAC
GATCACACACATGAACATGTAGATCACCATCACGACCACGCCCATCATCA
CCACCATCACCATGACGACCATGAAACAGATCACCATGACGACGAAGGTG
ATGGAGACGTAGAATACCATGATGATGGTGAAGGAGAGCAAAGTTATTAC
GGTGACCATGGTAACGGTGGAGGATATGGAGGGCATCACGATGGTTGTCA
TGATCACCATGACGACTGTCACCATGAAGACGTGCATCATCACCATGACC
ACCACCACCATCATCACGAGCACGTTCATCACGACCACGAACACCACCAT
CATCACCATCATCACGACCATCACGACCATCATCATGATCACCATCACCA
TGACGACCACGGTCACTATGGAGGGTATGGTGTGCACCACCGCTCCACAA
CAGAAGAAAGCATGGTGGAATTTCAACGCAACCCATTAGATCCACACAGT
GTGGACATCAGTGATCATCATGATCAGGACGAACATCACCACGAAGCTCT
CATCTCACCCATACCTCAAGCTGTTGAACAAATCGCTGTCGATCCTTCCA
ATCACGTCCACTACTTGTCACGTGATGACTTGCATGATCTACATTATGAT
AACGGACTACTTCAACATCACGATATTGAACGGTTTCACGATGACGACCA
TCACCATGACGACCATGAAACCGAACACCATTACCATGACGACGATCACG
AGGATCACCATGGAGACGAGCACCATTACCATGACGACCATCACGATGAT
CACCATGGAGATGAACACNAGCCCCACGCAAAACTCACAGCCACGGTCAC
CCCTATGGACACAACACACCATATCTTGCTGGTGACGGAATGGAGTCGGA
CCATGAAGGAGCGAACGAAGATGAGGGTGATGGAAGAGAGAATGTCGTTG
AAAGTGTTCATGGTGATCTCTGTGTAGAGAAACGAGATGGAATATGCTCA
TACAGTGGTAAGTAGAGACGTAGTTCAAGAAACACCATCTTAGAACAAAC
TTATATTTTGAGGCCATCAGGATATTCGAAGGAAGTCCTTCACCTTTGTA
GCATTATTATCTTATCATTTCAGGAACTCGAAGAACTCAAGAAAACAATC
ACGATGTTGAGCATCACGAACATCACGATCACACACATGAACATGTAGAT
CACCATCACGACCACGCCCATCATCACCACCATCACCATGACGACCATGA
AACAGATCACCATGACGACGAAGGTGATGGAGACGTAGAATACCATGATG
ATGGTGAAGGAGAGCAAAGTTATTACGGTGACCATGGTAACGGTGGAGGA
TATGGAGGGCATCACGATGGTTGTCATGATCACCATGACGACTGTCACCA
TGAAGACGTGCATCATCACCATGACCACCACCACCATCATCACGAGCACG
TTCATCACGACCACGAACACCACCATCATCACCATCATCACGACCATCAC
GACCATCATCATGATCACCATCACCATGACGACCACGGTCACTATGGAGG
GTATGGTGTGCACCACCGCTCCACAACAGAAGAAAGCATGGTGGAATTTC
AACGCAACCCATTAGATCCACACAGTGTGGACATCAGTGATCATCATGAT
CAGGACGAACATCACCACGAAGCTCTCATCTCACCCATACCTCAAGCTGT
TGAACAAATCGCTGTCGATCCTTCCAATCACGTCCACTACTTGTCACGTG
ATGACTTGCATGATCTACATTATGATAACGGACTACTTCAACATCACGAT
ATTGAACGGTTTCACGATGACGACCATCACCATGACGACCATGAAACCGA
ACACCATTACCATGACGACGATCACGAGGATCACCATGGAGACGAGCACC
ATTACCATGACGACCATCACGATGATCACCATGGAGATGAACACCATAAC
AGCCACCATGAACATCACCATGACGACCATCATGATCAAGGGTAAGTTTA
ACCTTTTGAACCTATCAAAACGTGTTTTAATTCACACAAAAGATCTATCT
TCAACTACACATTGTATAAAGGGATTGATTTGTTTTTCTTCACAACAGAT
ACGTAAAACATCACAATCCTCACCAATACGAACACCATGAATTGGACCAT
CCAGCACGTGATCATTACCATCAGACGACTGACCATGGAAGTTTTCATGG
ATCTCACCATGGCAACGATGATCACCATGATGATGATTTGTATTACGAGC
ATGAGCACACTTTCCCTACACCTTTGCACCAGTCATACCACACACCTTTA
TTCGCACCACCACAAAGAGAACTTCCCATGTTTCAAGTCCGATATCCTCA
CCATGATGATGAATACCATGACCATCATCACCGAAGAACTAACATCCAAG
ACCACAACAACAACTTTCAACCGCTCATAAAGAGAATAATCAACAGTCTG
AACATTGAAATTGTTGATATCAAGAAAAAATAAAATCGAGATTTTTGAAT
TCTTCTGTTGCAGACATCGAACAAATATGGTTGGTCGTATTTTTCGAATA
ATACTTTAACAGTGTTAAGACAACCTATGATACAGAGGCTTCTTTGTCGC
AACCTTCTGCAAAAATAATGAACTATGGATATTTAATTTCATGTTGTCAT
GAATTTCGATTGATACATGTAATTCTTCTGGAAAAAAAGAAGAGAATGAA
AATTAACCTATGCACATGGTGTTTAGTCCAAAACAAGATTTATGTAACAT
AGAAATAATAAATTATAAGATTTGTCAAATCTATTTACAGGGGTTGATCT
ACTTTAGATCGGTTATTTTTTTAAAGAAAAAATTATAAATACAAAAAACA
GTTTTTTGGGCTTTCTCTGAAAAGAGTCAAACAATTTACAATTTCACGCA
TTACTGTGGGATTCTTAAAATTGATAATTAGCGTAAGGGATAAGGTCATA
TTTTAGCATATGAATTAGCAAATTGTAACACATGAAAAAATATTTTAAAA
GTTCCCTATCTGATAACTTAAGTTAGGTAAACAGCCAATATGTACATTCA
CTTGAGTAAGGGTGAACCTTGTAATGTAATGACTCTTATTATAAGAATTC
CCAGGCTGTTAAAAATTTACTTTTCATGAAAATATATAAATATGAGAATT
TCTGTCTAAAAAAATAAAATTACTATGTACATTGTCAATGCTTAAAGAAA
ATTTCAAATAACACTATTGTCGAAAAGCCAATCCCTACATTGCATTTCAC
AGTATATCTCCTGAATTTCGAAACCTAACTATAACTCCTATTTCTCCTAA
ATTCAAATTAATACACTCTTCTCGAGATGCATAAATTTATTGTTGCCCTC
GTTTTCAAACAGATTTTATTGCTATAAAATTACATATTCACAATGATAAT
TGTGTTGTTCACACCTCATGAGACATTTTGAATTTCAAGTACTTTTGTTG
CCTTTTGGGAATTTAAATTGGTTTAAATGTATAATTTCATAGCAATGAAA
TGTGTTGAAAACGAGGACAACAATAAATTTATGCATCTCGAGAAGAGCGT
ATTGGTACAGTAAAAATTTCGTGAAAATGCAAAACAACATTTTTACAAAA
ACATTACTGAAAGAGGAATCTAATAAATCGGATCAGAACCCAAAACCTAA
ATGCCGCATTACCTCGCACCATAAAGTAAATGGAAACCTTGCTATGCTTT
TTCCTTAATATTTGAGCACTGGATATTTTATATAGATGCAGAAATGGCTC
ATATATTAGTTAGTTGGAATACTAAAAGGATATGTTTATTATCATGTATC
TCAGTGTTTTTCTTTAAAACCTGTATTATGGGGGAAAGCATGTAAGCATT
AGTAAATAGTATTCAATGATCCCTAAAAACGAAACAAAACACCAACAAAA
AAGCGACGATAATCAGCTTAAGATGTTATCCCCCGTCCCATCAAATGATG
ACTAATGATGACTATTGAATATTGGACGGGAACTGTCAATTTTAACATAT
ACTCAAATACAAGTATTTTCTGCGTTCGACGAGAAATGAAGAGTGGCTAC
CCTTTTCTAGATTCGAGTCGTATTCCGGGCAGTTCGTTATCATTTTGTGC
GTGTCAGAATGTGACATTAGTTAGTACACCAGTCAATAGAGTAGCAAACT
TTTTATTCGGAATTTTTTCACCGCTCACCTTATAATGATACGAAATCGTA
TTCTATTACCACCACCCCCGCCACCACCACCGCCTCCATTTTCATCATCA
TCATCATCTCCGTCGTCACTACTGAAAGAGTCCTCATCGCTGGAAAATGT
TCGATGCTTTTTCAATGAAACTGGCTTAGGGTGGTTGGCGTCGCGAAAAT
ATCGCAAATATTTGATCAATATTCTAGGTAATGGTAAGTCATCTAAAATA
TCTAGTTGAGCGAAGGAGATTTCATCTTCGGGTGCGGTCAAAGTGAAGAC
ACTTTGTAGAATGATTTGACGAGAAAGTTCTTTCAGTGTTGGTGGTTGTG
TAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001109-exon-sc0000007-1575043694:348595..349601 | TCONS_00001109-exon-sc0000007-1575043694:348595..349601 | Clytia hemisphaerica | exon |
| TCONS_00001109-exon-sc0000007-1575043694:347611..348478 | TCONS_00001109-exon-sc0000007-1575043694:347611..348478 | Clytia hemisphaerica | exon |
| TCONS_00001109-exon-sc0000007-1575043694:345099..347503 | TCONS_00001109-exon-sc0000007-1575043694:345099..347503 | Clytia hemisphaerica | exon |
| TCONS_00001109-exon-sc0000007-1510915933:348595..349601 | TCONS_00001109-exon-sc0000007-1510915933:348595..349601 | Clytia hemisphaerica | exon |
| TCONS_00001109-exon-sc0000007-1510915933:347611..348478 | TCONS_00001109-exon-sc0000007-1510915933:347611..348478 | Clytia hemisphaerica | exon |
| TCONS_00001109-exon-sc0000007-1510915933:345099..347503 | TCONS_00001109-exon-sc0000007-1510915933:345099..347503 | Clytia hemisphaerica | exon |
| TCONS_00001109-exon-sc0000007-1491911889:348595..349601 | TCONS_00001109-exon-sc0000007-1491911889:348595..349601 | Clytia hemisphaerica | exon |
| TCONS_00001109-exon-sc0000007-1491911889:347611..348478 | TCONS_00001109-exon-sc0000007-1491911889:347611..348478 | Clytia hemisphaerica | exon |
| TCONS_00001109-exon-sc0000007-1491911889:345099..347503 | TCONS_00001109-exon-sc0000007-1491911889:345099..347503 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:345099..349601 - |
Blast
The following BLAST results are available for this feature:
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