TCONS_00001109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001109
Unique NameTCONS_00001109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001109 ID=TCONS_00001109|Name=TCONS_00001109|organism=Clytia hemisphaerica|type=transcript|length=4280bp
CTCGAAGAACTCAAGAAAACAATCACGATGTTGAGCATCACGAACATCAC
GATCACACACATGAACATGTAGATCACCATCACGACCACGCCCATCATCA
CCACCATCACCATGACGACCATGAAACAGATCACCATGACGACGAAGGTG
ATGGAGACGTAGAATACCATGATGATGGTGAAGGAGAGCAAAGTTATTAC
GGTGACCATGGTAACGGTGGAGGATATGGAGGGCATCACGATGGTTGTCA
TGATCACCATGACGACTGTCACCATGAAGACGTGCATCATCACCATGACC
ACCACCACCATCATCACGAGCACGTTCATCACGACCACGAACACCACCAT
CATCACCATCATCACGACCATCACGACCATCATCATGATCACCATCACCA
TGACGACCACGGTCACTATGGAGGGTATGGTGTGCACCACCGCTCCACAA
CAGAAGAAAGCATGGTGGAATTTCAACGCAACCCATTAGATCCACACAGT
GTGGACATCAGTGATCATCATGATCAGGACGAACATCACCACGAAGCTCT
CATCTCACCCATACCTCAAGCTGTTGAACAAATCGCTGTCGATCCTTCCA
ATCACGTCCACTACTTGTCACGTGATGACTTGCATGATCTACATTATGAT
AACGGACTACTTCAACATCACGATATTGAACGGTTTCACGATGACGACCA
TCACCATGACGACCATGAAACCGAACACCATTACCATGACGACGATCACG
AGGATCACCATGGAGACGAGCACCATTACCATGACGACCATCACGATGAT
CACCATGGAGATGAACACNAGCCCCACGCAAAACTCACAGCCACGGTCAC
CCCTATGGACACAACACACCATATCTTGCTGGTGACGGAATGGAGTCGGA
CCATGAAGGAGCGAACGAAGATGAGGGTGATGGAAGAGAGAATGTCGTTG
AAAGTGTTCATGGTGATCTCTGTGTAGAGAAACGAGATGGAATATGCTCA
TACAGTGGAACTCGAAGAACTCAAGAAAACAATCACGATGTTGAGCATCA
CGAACATCACGATCACACACATGAACATGTAGATCACCATCACGACCACG
CCCATCATCACCACCATCACCATGACGACCATGAAACAGATCACCATGAC
GACGAAGGTGATGGAGACGTAGAATACCATGATGATGGTGAAGGAGAGCA
AAGTTATTACGGTGACCATGGTAACGGTGGAGGATATGGAGGGCATCACG
ATGGTTGTCATGATCACCATGACGACTGTCACCATGAAGACGTGCATCAT
CACCATGACCACCACCACCATCATCACGAGCACGTTCATCACGACCACGA
ACACCACCATCATCACCATCATCACGACCATCACGACCATCATCATGATC
ACCATCACCATGACGACCACGGTCACTATGGAGGGTATGGTGTGCACCAC
CGCTCCACAACAGAAGAAAGCATGGTGGAATTTCAACGCAACCCATTAGA
TCCACACAGTGTGGACATCAGTGATCATCATGATCAGGACGAACATCACC
ACGAAGCTCTCATCTCACCCATACCTCAAGCTGTTGAACAAATCGCTGTC
GATCCTTCCAATCACGTCCACTACTTGTCACGTGATGACTTGCATGATCT
ACATTATGATAACGGACTACTTCAACATCACGATATTGAACGGTTTCACG
ATGACGACCATCACCATGACGACCATGAAACCGAACACCATTACCATGAC
GACGATCACGAGGATCACCATGGAGACGAGCACCATTACCATGACGACCA
TCACGATGATCACCATGGAGATGAACACCATAACAGCCACCATGAACATC
ACCATGACGACCATCATGATCAAGGATACGTAAAACATCACAATCCTCAC
CAATACGAACACCATGAATTGGACCATCCAGCACGTGATCATTACCATCA
GACGACTGACCATGGAAGTTTTCATGGATCTCACCATGGCAACGATGATC
ACCATGATGATGATTTGTATTACGAGCATGAGCACACTTTCCCTACACCT
TTGCACCAGTCATACCACACACCTTTATTCGCACCACCACAAAGAGAACT
TCCCATGTTTCAAGTCCGATATCCTCACCATGATGATGAATACCATGACC
ATCATCACCGAAGAACTAACATCCAAGACCACAACAACAACTTTCAACCG
CTCATAAAGAGAATAATCAACAGTCTGAACATTGAAATTGTTGAtatcaa
gaaaaaataaaatcgagATTTTTGAATTCTTCTGTTGCAGACATCGAACA
AATATGGTTGGTCGTATTTTTCGAATAATACTTTAACAGTGTTAAGACAA
CCTATGATACAGAGGCTTCTTTGTCGCAACCTTCTGCAAAAATAATGAAC
TATGGATATTTAATTTCATGTTGTCATGAATTTCGATTGATACATGTAAT
TCTtctggaaaaaaagaagagaatgaaAATTAACCTATGCACATGGTGTT
TAGTCCAAAACAAGATTTATGTAACATAGAAATAATAAATTATAAGATTT
GTCAAATCTATTTACAGGGGTTGATCTACTTTAGATcggttattttttta
aagaaaaaattataaatacaaaaaacagttttttgggcTTTCTCTGAAAA
GAGTCAAACAATTTACAATTTCACGCATTACTGTGGGATTCTTAAAATTG
ATAATTAGCGTAAGGGATAAGGTCATATTTTAGCATATGAATTAGCAAAT
TGTAacacatgaaaaaatattttaaaagttccCTATCTGATAACTTAAGT
TAGGTAAACAGCCAATATGTACATTCACTTGAGTAAGGGTGAACCTTGTA
ATGTAatgactcttattataagaaTTCCCAGGCTgttaaaaatttacttt
tcatgaaaatatataaatatgagAATTTCtgtctaaaaaaataaaattac
taTGTACATTGTCAATgcttaaagaaaatttcaaataacaCTATTGTCGA
AAAGCCAATCCCTACATTGCATTTCACAGTATATCTCCTGAATTTCGAAA
CCTAACTATAACTCCTATTTCTCCTAAATTCAaattaatacactcttctc
gagatgcataaatttattgttgccctcgttttcaaacagattttattgct
ataaaattacatattcacaatgataattgtgttgttcacacctcatgaga
cattttgaatttcaagtacttttgttgccttttgggaatttaaattggtt
taaatgtataatttcatagcaatgaaatgtgttgaaaacgaggacaacaa
taaatttatgcatctcgagaagagcgTATTGGTACAGtaaaaatttcgtg
aaaatgcaaaacaacatttttacaaaaacattACTGAAAGAGGAATCTAA
TAAATCGGATCAGAACCCAAAACCTAAATGCCGCATTACCTCGCACCATA
AAGTAAATGGAAACCTTGCTATGCTTTTTCCTTAATATTTGAGCACTGGA
TATTTTATATAGATGCAGAAATGGCTCATATATTAGTTAGTTGGAATACT
AAAAGGATATGTTTATTATCATGTATCTcagtgtttttctttaaaacctG
TATTATGGGGGAAAGCATGTAAGCATTAGTAAATAGTATTCAATGATCCC
TAAAAACGAAACAAAACACCAACAAAAAAGCGACGATAATCAGCTTAAGA
TGTTATCCCCCGTCCCATCAAATGATGACTAATGATGACTATTGAATATT
GGACGGGAACTGTCAATTTTAACATATACTCAAATACAAGTATTTTCTGC
GTTCGACGAGAAATGAAGAGTGGCTACCCTTTTCTAGATTCGAGTCGTAT
TCCGGGCAGTTCGTTATCATTTTGTGCGTGTCAGAATGTGACATTAGTTA
GTACACCAGTCAATAGAGTAGCAAACTTTTTATTCGGAATTTTTTCACCG
CTCACCTTATAATGATACGAAATCGTATTCTATTACCACCACCCCCGCCA
CCACCACCGCCTccattttcatcatcatcatcatctccGTCGTCACTACT
GAAAGAGTCCTCATCGCTGGAAAATGTTCGATgctttttcaatgaaactg
gcTTAGGGTGGTTGGCGTCGCGAAAATATCGCAAATATTTGATCAATATT
CTAGGTAATGGTAAGTCATCTAAAATATCTAGTTGAGCGAAGGAGATTTC
ATCTTCGGGTGCGGTCAAAGTGAAGACACTTTGTAGAATGATTTGACGAG
AAAGTTCTTTCAGTGTTGGTGGTTGTGTAT
Run BLAST on NCBI

transcript from alignment at sc0000007:345099..349601-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001109 ID=TCONS_00001109|Name=TCONS_00001109|organism=Clytia hemisphaerica|type=transcript|length=4503bp|location=Sequence derived from alignment at sc0000007:345099..349601- (Clytia hemisphaerica)
CTCGAAGAACTCAAGAAAACAATCACGATGTTGAGCATCACGAACATCAC GATCACACACATGAACATGTAGATCACCATCACGACCACGCCCATCATCA CCACCATCACCATGACGACCATGAAACAGATCACCATGACGACGAAGGTG ATGGAGACGTAGAATACCATGATGATGGTGAAGGAGAGCAAAGTTATTAC GGTGACCATGGTAACGGTGGAGGATATGGAGGGCATCACGATGGTTGTCA TGATCACCATGACGACTGTCACCATGAAGACGTGCATCATCACCATGACC ACCACCACCATCATCACGAGCACGTTCATCACGACCACGAACACCACCAT CATCACCATCATCACGACCATCACGACCATCATCATGATCACCATCACCA TGACGACCACGGTCACTATGGAGGGTATGGTGTGCACCACCGCTCCACAA CAGAAGAAAGCATGGTGGAATTTCAACGCAACCCATTAGATCCACACAGT GTGGACATCAGTGATCATCATGATCAGGACGAACATCACCACGAAGCTCT CATCTCACCCATACCTCAAGCTGTTGAACAAATCGCTGTCGATCCTTCCA ATCACGTCCACTACTTGTCACGTGATGACTTGCATGATCTACATTATGAT AACGGACTACTTCAACATCACGATATTGAACGGTTTCACGATGACGACCA TCACCATGACGACCATGAAACCGAACACCATTACCATGACGACGATCACG AGGATCACCATGGAGACGAGCACCATTACCATGACGACCATCACGATGAT CACCATGGAGATGAACACNAGCCCCACGCAAAACTCACAGCCACGGTCAC CCCTATGGACACAACACACCATATCTTGCTGGTGACGGAATGGAGTCGGA CCATGAAGGAGCGAACGAAGATGAGGGTGATGGAAGAGAGAATGTCGTTG AAAGTGTTCATGGTGATCTCTGTGTAGAGAAACGAGATGGAATATGCTCA TACAGTGGTAAGTAGAGACGTAGTTCAAGAAACACCATCTTAGAACAAAC TTATATTTTGAGGCCATCAGGATATTCGAAGGAAGTCCTTCACCTTTGTA GCATTATTATCTTATCATTTCAGGAACTCGAAGAACTCAAGAAAACAATC ACGATGTTGAGCATCACGAACATCACGATCACACACATGAACATGTAGAT CACCATCACGACCACGCCCATCATCACCACCATCACCATGACGACCATGA AACAGATCACCATGACGACGAAGGTGATGGAGACGTAGAATACCATGATG ATGGTGAAGGAGAGCAAAGTTATTACGGTGACCATGGTAACGGTGGAGGA TATGGAGGGCATCACGATGGTTGTCATGATCACCATGACGACTGTCACCA TGAAGACGTGCATCATCACCATGACCACCACCACCATCATCACGAGCACG TTCATCACGACCACGAACACCACCATCATCACCATCATCACGACCATCAC GACCATCATCATGATCACCATCACCATGACGACCACGGTCACTATGGAGG GTATGGTGTGCACCACCGCTCCACAACAGAAGAAAGCATGGTGGAATTTC AACGCAACCCATTAGATCCACACAGTGTGGACATCAGTGATCATCATGAT CAGGACGAACATCACCACGAAGCTCTCATCTCACCCATACCTCAAGCTGT TGAACAAATCGCTGTCGATCCTTCCAATCACGTCCACTACTTGTCACGTG ATGACTTGCATGATCTACATTATGATAACGGACTACTTCAACATCACGAT ATTGAACGGTTTCACGATGACGACCATCACCATGACGACCATGAAACCGA ACACCATTACCATGACGACGATCACGAGGATCACCATGGAGACGAGCACC ATTACCATGACGACCATCACGATGATCACCATGGAGATGAACACCATAAC AGCCACCATGAACATCACCATGACGACCATCATGATCAAGGGTAAGTTTA ACCTTTTGAACCTATCAAAACGTGTTTTAATTCACACAAAAGATCTATCT TCAACTACACATTGTATAAAGGGATTGATTTGTTTTTCTTCACAACAGAT ACGTAAAACATCACAATCCTCACCAATACGAACACCATGAATTGGACCAT CCAGCACGTGATCATTACCATCAGACGACTGACCATGGAAGTTTTCATGG ATCTCACCATGGCAACGATGATCACCATGATGATGATTTGTATTACGAGC ATGAGCACACTTTCCCTACACCTTTGCACCAGTCATACCACACACCTTTA TTCGCACCACCACAAAGAGAACTTCCCATGTTTCAAGTCCGATATCCTCA CCATGATGATGAATACCATGACCATCATCACCGAAGAACTAACATCCAAG ACCACAACAACAACTTTCAACCGCTCATAAAGAGAATAATCAACAGTCTG AACATTGAAATTGTTGATATCAAGAAAAAATAAAATCGAGATTTTTGAAT TCTTCTGTTGCAGACATCGAACAAATATGGTTGGTCGTATTTTTCGAATA ATACTTTAACAGTGTTAAGACAACCTATGATACAGAGGCTTCTTTGTCGC AACCTTCTGCAAAAATAATGAACTATGGATATTTAATTTCATGTTGTCAT GAATTTCGATTGATACATGTAATTCTTCTGGAAAAAAAGAAGAGAATGAA AATTAACCTATGCACATGGTGTTTAGTCCAAAACAAGATTTATGTAACAT AGAAATAATAAATTATAAGATTTGTCAAATCTATTTACAGGGGTTGATCT ACTTTAGATCGGTTATTTTTTTAAAGAAAAAATTATAAATACAAAAAACA GTTTTTTGGGCTTTCTCTGAAAAGAGTCAAACAATTTACAATTTCACGCA TTACTGTGGGATTCTTAAAATTGATAATTAGCGTAAGGGATAAGGTCATA TTTTAGCATATGAATTAGCAAATTGTAACACATGAAAAAATATTTTAAAA GTTCCCTATCTGATAACTTAAGTTAGGTAAACAGCCAATATGTACATTCA CTTGAGTAAGGGTGAACCTTGTAATGTAATGACTCTTATTATAAGAATTC CCAGGCTGTTAAAAATTTACTTTTCATGAAAATATATAAATATGAGAATT TCTGTCTAAAAAAATAAAATTACTATGTACATTGTCAATGCTTAAAGAAA ATTTCAAATAACACTATTGTCGAAAAGCCAATCCCTACATTGCATTTCAC AGTATATCTCCTGAATTTCGAAACCTAACTATAACTCCTATTTCTCCTAA ATTCAAATTAATACACTCTTCTCGAGATGCATAAATTTATTGTTGCCCTC GTTTTCAAACAGATTTTATTGCTATAAAATTACATATTCACAATGATAAT TGTGTTGTTCACACCTCATGAGACATTTTGAATTTCAAGTACTTTTGTTG CCTTTTGGGAATTTAAATTGGTTTAAATGTATAATTTCATAGCAATGAAA TGTGTTGAAAACGAGGACAACAATAAATTTATGCATCTCGAGAAGAGCGT ATTGGTACAGTAAAAATTTCGTGAAAATGCAAAACAACATTTTTACAAAA ACATTACTGAAAGAGGAATCTAATAAATCGGATCAGAACCCAAAACCTAA ATGCCGCATTACCTCGCACCATAAAGTAAATGGAAACCTTGCTATGCTTT TTCCTTAATATTTGAGCACTGGATATTTTATATAGATGCAGAAATGGCTC ATATATTAGTTAGTTGGAATACTAAAAGGATATGTTTATTATCATGTATC TCAGTGTTTTTCTTTAAAACCTGTATTATGGGGGAAAGCATGTAAGCATT AGTAAATAGTATTCAATGATCCCTAAAAACGAAACAAAACACCAACAAAA AAGCGACGATAATCAGCTTAAGATGTTATCCCCCGTCCCATCAAATGATG ACTAATGATGACTATTGAATATTGGACGGGAACTGTCAATTTTAACATAT ACTCAAATACAAGTATTTTCTGCGTTCGACGAGAAATGAAGAGTGGCTAC CCTTTTCTAGATTCGAGTCGTATTCCGGGCAGTTCGTTATCATTTTGTGC GTGTCAGAATGTGACATTAGTTAGTACACCAGTCAATAGAGTAGCAAACT TTTTATTCGGAATTTTTTCACCGCTCACCTTATAATGATACGAAATCGTA TTCTATTACCACCACCCCCGCCACCACCACCGCCTCCATTTTCATCATCA TCATCATCTCCGTCGTCACTACTGAAAGAGTCCTCATCGCTGGAAAATGT TCGATGCTTTTTCAATGAAACTGGCTTAGGGTGGTTGGCGTCGCGAAAAT ATCGCAAATATTTGATCAATATTCTAGGTAATGGTAAGTCATCTAAAATA TCTAGTTGAGCGAAGGAGATTTCATCTTCGGGTGCGGTCAAAGTGAAGAC ACTTTGTAGAATGATTTGACGAGAAAGTTCTTTCAGTGTTGGTGGTTGTG TAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000626XLOC_000626Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001109-exon-sc0000007-1575043694:348595..349601TCONS_00001109-exon-sc0000007-1575043694:348595..349601Clytia hemisphaericaexon
TCONS_00001109-exon-sc0000007-1575043694:347611..348478TCONS_00001109-exon-sc0000007-1575043694:347611..348478Clytia hemisphaericaexon
TCONS_00001109-exon-sc0000007-1575043694:345099..347503TCONS_00001109-exon-sc0000007-1575043694:345099..347503Clytia hemisphaericaexon
TCONS_00001109-exon-sc0000007-1510915933:348595..349601TCONS_00001109-exon-sc0000007-1510915933:348595..349601Clytia hemisphaericaexon
TCONS_00001109-exon-sc0000007-1510915933:347611..348478TCONS_00001109-exon-sc0000007-1510915933:347611..348478Clytia hemisphaericaexon
TCONS_00001109-exon-sc0000007-1510915933:345099..347503TCONS_00001109-exon-sc0000007-1510915933:345099..347503Clytia hemisphaericaexon
TCONS_00001109-exon-sc0000007-1491911889:348595..349601TCONS_00001109-exon-sc0000007-1491911889:348595..349601Clytia hemisphaericaexon
TCONS_00001109-exon-sc0000007-1491911889:347611..348478TCONS_00001109-exon-sc0000007-1491911889:347611..348478Clytia hemisphaericaexon
TCONS_00001109-exon-sc0000007-1491911889:345099..347503TCONS_00001109-exon-sc0000007-1491911889:345099..347503Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:345099..349601 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.0164329 0 0 0 0 0 0 0.143376 0.122771 0.164467 0 0 0.0631758 0 0.216832 0 0.0602034 0.0610938 0 0 0 0.104672 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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