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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001109 ID=TCONS_00001109|Name=TCONS_00001109|organism=Clytia hemisphaerica|type=transcript|length=4280bp CTCGAAGAACTCAAGAAAACAATCACGATGTTGAGCATCACGAACATCAC GATCACACACATGAACATGTAGATCACCATCACGACCACGCCCATCATCA CCACCATCACCATGACGACCATGAAACAGATCACCATGACGACGAAGGTG ATGGAGACGTAGAATACCATGATGATGGTGAAGGAGAGCAAAGTTATTAC GGTGACCATGGTAACGGTGGAGGATATGGAGGGCATCACGATGGTTGTCA TGATCACCATGACGACTGTCACCATGAAGACGTGCATCATCACCATGACC ACCACCACCATCATCACGAGCACGTTCATCACGACCACGAACACCACCAT CATCACCATCATCACGACCATCACGACCATCATCATGATCACCATCACCA TGACGACCACGGTCACTATGGAGGGTATGGTGTGCACCACCGCTCCACAA CAGAAGAAAGCATGGTGGAATTTCAACGCAACCCATTAGATCCACACAGT GTGGACATCAGTGATCATCATGATCAGGACGAACATCACCACGAAGCTCT CATCTCACCCATACCTCAAGCTGTTGAACAAATCGCTGTCGATCCTTCCA ATCACGTCCACTACTTGTCACGTGATGACTTGCATGATCTACATTATGAT AACGGACTACTTCAACATCACGATATTGAACGGTTTCACGATGACGACCA TCACCATGACGACCATGAAACCGAACACCATTACCATGACGACGATCACG AGGATCACCATGGAGACGAGCACCATTACCATGACGACCATCACGATGAT CACCATGGAGATGAACACNAGCCCCACGCAAAACTCACAGCCACGGTCAC CCCTATGGACACAACACACCATATCTTGCTGGTGACGGAATGGAGTCGGA CCATGAAGGAGCGAACGAAGATGAGGGTGATGGAAGAGAGAATGTCGTTG AAAGTGTTCATGGTGATCTCTGTGTAGAGAAACGAGATGGAATATGCTCA TACAGTGGAACTCGAAGAACTCAAGAAAACAATCACGATGTTGAGCATCA CGAACATCACGATCACACACATGAACATGTAGATCACCATCACGACCACG CCCATCATCACCACCATCACCATGACGACCATGAAACAGATCACCATGAC GACGAAGGTGATGGAGACGTAGAATACCATGATGATGGTGAAGGAGAGCA AAGTTATTACGGTGACCATGGTAACGGTGGAGGATATGGAGGGCATCACG ATGGTTGTCATGATCACCATGACGACTGTCACCATGAAGACGTGCATCAT CACCATGACCACCACCACCATCATCACGAGCACGTTCATCACGACCACGA ACACCACCATCATCACCATCATCACGACCATCACGACCATCATCATGATC ACCATCACCATGACGACCACGGTCACTATGGAGGGTATGGTGTGCACCAC CGCTCCACAACAGAAGAAAGCATGGTGGAATTTCAACGCAACCCATTAGA TCCACACAGTGTGGACATCAGTGATCATCATGATCAGGACGAACATCACC ACGAAGCTCTCATCTCACCCATACCTCAAGCTGTTGAACAAATCGCTGTC GATCCTTCCAATCACGTCCACTACTTGTCACGTGATGACTTGCATGATCT ACATTATGATAACGGACTACTTCAACATCACGATATTGAACGGTTTCACG ATGACGACCATCACCATGACGACCATGAAACCGAACACCATTACCATGAC GACGATCACGAGGATCACCATGGAGACGAGCACCATTACCATGACGACCA TCACGATGATCACCATGGAGATGAACACCATAACAGCCACCATGAACATC ACCATGACGACCATCATGATCAAGGATACGTAAAACATCACAATCCTCAC CAATACGAACACCATGAATTGGACCATCCAGCACGTGATCATTACCATCA GACGACTGACCATGGAAGTTTTCATGGATCTCACCATGGCAACGATGATC ACCATGATGATGATTTGTATTACGAGCATGAGCACACTTTCCCTACACCT TTGCACCAGTCATACCACACACCTTTATTCGCACCACCACAAAGAGAACT TCCCATGTTTCAAGTCCGATATCCTCACCATGATGATGAATACCATGACC ATCATCACCGAAGAACTAACATCCAAGACCACAACAACAACTTTCAACCG CTCATAAAGAGAATAATCAACAGTCTGAACATTGAAATTGTTGAtatcaa gaaaaaataaaatcgagATTTTTGAATTCTTCTGTTGCAGACATCGAACA AATATGGTTGGTCGTATTTTTCGAATAATACTTTAACAGTGTTAAGACAA CCTATGATACAGAGGCTTCTTTGTCGCAACCTTCTGCAAAAATAATGAAC TATGGATATTTAATTTCATGTTGTCATGAATTTCGATTGATACATGTAAT TCTtctggaaaaaaagaagagaatgaaAATTAACCTATGCACATGGTGTT TAGTCCAAAACAAGATTTATGTAACATAGAAATAATAAATTATAAGATTT GTCAAATCTATTTACAGGGGTTGATCTACTTTAGATcggttattttttta aagaaaaaattataaatacaaaaaacagttttttgggcTTTCTCTGAAAA GAGTCAAACAATTTACAATTTCACGCATTACTGTGGGATTCTTAAAATTG ATAATTAGCGTAAGGGATAAGGTCATATTTTAGCATATGAATTAGCAAAT TGTAacacatgaaaaaatattttaaaagttccCTATCTGATAACTTAAGT TAGGTAAACAGCCAATATGTACATTCACTTGAGTAAGGGTGAACCTTGTA ATGTAatgactcttattataagaaTTCCCAGGCTgttaaaaatttacttt tcatgaaaatatataaatatgagAATTTCtgtctaaaaaaataaaattac taTGTACATTGTCAATgcttaaagaaaatttcaaataacaCTATTGTCGA AAAGCCAATCCCTACATTGCATTTCACAGTATATCTCCTGAATTTCGAAA CCTAACTATAACTCCTATTTCTCCTAAATTCAaattaatacactcttctc gagatgcataaatttattgttgccctcgttttcaaacagattttattgct ataaaattacatattcacaatgataattgtgttgttcacacctcatgaga cattttgaatttcaagtacttttgttgccttttgggaatttaaattggtt taaatgtataatttcatagcaatgaaatgtgttgaaaacgaggacaacaa taaatttatgcatctcgagaagagcgTATTGGTACAGtaaaaatttcgtg aaaatgcaaaacaacatttttacaaaaacattACTGAAAGAGGAATCTAA TAAATCGGATCAGAACCCAAAACCTAAATGCCGCATTACCTCGCACCATA AAGTAAATGGAAACCTTGCTATGCTTTTTCCTTAATATTTGAGCACTGGA TATTTTATATAGATGCAGAAATGGCTCATATATTAGTTAGTTGGAATACT AAAAGGATATGTTTATTATCATGTATCTcagtgtttttctttaaaacctG TATTATGGGGGAAAGCATGTAAGCATTAGTAAATAGTATTCAATGATCCC TAAAAACGAAACAAAACACCAACAAAAAAGCGACGATAATCAGCTTAAGA TGTTATCCCCCGTCCCATCAAATGATGACTAATGATGACTATTGAATATT GGACGGGAACTGTCAATTTTAACATATACTCAAATACAAGTATTTTCTGC GTTCGACGAGAAATGAAGAGTGGCTACCCTTTTCTAGATTCGAGTCGTAT TCCGGGCAGTTCGTTATCATTTTGTGCGTGTCAGAATGTGACATTAGTTA GTACACCAGTCAATAGAGTAGCAAACTTTTTATTCGGAATTTTTTCACCG CTCACCTTATAATGATACGAAATCGTATTCTATTACCACCACCCCCGCCA CCACCACCGCCTccattttcatcatcatcatcatctccGTCGTCACTACT GAAAGAGTCCTCATCGCTGGAAAATGTTCGATgctttttcaatgaaactg gcTTAGGGTGGTTGGCGTCGCGAAAATATCGCAAATATTTGATCAATATT CTAGGTAATGGTAAGTCATCTAAAATATCTAGTTGAGCGAAGGAGATTTC ATCTTCGGGTGCGGTCAAAGTGAAGACACTTTGTAGAATGATTTGACGAG AAAGTTCTTTCAGTGTTGGTGGTTGTGTAT Run BLAST on NCBI transcript from alignment at sc0000007:345099..349601- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001109 ID=TCONS_00001109|Name=TCONS_00001109|organism=Clytia hemisphaerica|type=transcript|length=4503bp|location=Sequence derived from alignment at sc0000007:345099..349601- (Clytia hemisphaerica) CTCGAAGAACTCAAGAAAACAATCACGATGTTGAGCATCACGAACATCAC
GATCACACACATGAACATGTAGATCACCATCACGACCACGCCCATCATCA
CCACCATCACCATGACGACCATGAAACAGATCACCATGACGACGAAGGTG
ATGGAGACGTAGAATACCATGATGATGGTGAAGGAGAGCAAAGTTATTAC
GGTGACCATGGTAACGGTGGAGGATATGGAGGGCATCACGATGGTTGTCA
TGATCACCATGACGACTGTCACCATGAAGACGTGCATCATCACCATGACC
ACCACCACCATCATCACGAGCACGTTCATCACGACCACGAACACCACCAT
CATCACCATCATCACGACCATCACGACCATCATCATGATCACCATCACCA
TGACGACCACGGTCACTATGGAGGGTATGGTGTGCACCACCGCTCCACAA
CAGAAGAAAGCATGGTGGAATTTCAACGCAACCCATTAGATCCACACAGT
GTGGACATCAGTGATCATCATGATCAGGACGAACATCACCACGAAGCTCT
CATCTCACCCATACCTCAAGCTGTTGAACAAATCGCTGTCGATCCTTCCA
ATCACGTCCACTACTTGTCACGTGATGACTTGCATGATCTACATTATGAT
AACGGACTACTTCAACATCACGATATTGAACGGTTTCACGATGACGACCA
TCACCATGACGACCATGAAACCGAACACCATTACCATGACGACGATCACG
AGGATCACCATGGAGACGAGCACCATTACCATGACGACCATCACGATGAT
CACCATGGAGATGAACACNAGCCCCACGCAAAACTCACAGCCACGGTCAC
CCCTATGGACACAACACACCATATCTTGCTGGTGACGGAATGGAGTCGGA
CCATGAAGGAGCGAACGAAGATGAGGGTGATGGAAGAGAGAATGTCGTTG
AAAGTGTTCATGGTGATCTCTGTGTAGAGAAACGAGATGGAATATGCTCA
TACAGTGGTAAGTAGAGACGTAGTTCAAGAAACACCATCTTAGAACAAAC
TTATATTTTGAGGCCATCAGGATATTCGAAGGAAGTCCTTCACCTTTGTA
GCATTATTATCTTATCATTTCAGGAACTCGAAGAACTCAAGAAAACAATC
ACGATGTTGAGCATCACGAACATCACGATCACACACATGAACATGTAGAT
CACCATCACGACCACGCCCATCATCACCACCATCACCATGACGACCATGA
AACAGATCACCATGACGACGAAGGTGATGGAGACGTAGAATACCATGATG
ATGGTGAAGGAGAGCAAAGTTATTACGGTGACCATGGTAACGGTGGAGGA
TATGGAGGGCATCACGATGGTTGTCATGATCACCATGACGACTGTCACCA
TGAAGACGTGCATCATCACCATGACCACCACCACCATCATCACGAGCACG
TTCATCACGACCACGAACACCACCATCATCACCATCATCACGACCATCAC
GACCATCATCATGATCACCATCACCATGACGACCACGGTCACTATGGAGG
GTATGGTGTGCACCACCGCTCCACAACAGAAGAAAGCATGGTGGAATTTC
AACGCAACCCATTAGATCCACACAGTGTGGACATCAGTGATCATCATGAT
CAGGACGAACATCACCACGAAGCTCTCATCTCACCCATACCTCAAGCTGT
TGAACAAATCGCTGTCGATCCTTCCAATCACGTCCACTACTTGTCACGTG
ATGACTTGCATGATCTACATTATGATAACGGACTACTTCAACATCACGAT
ATTGAACGGTTTCACGATGACGACCATCACCATGACGACCATGAAACCGA
ACACCATTACCATGACGACGATCACGAGGATCACCATGGAGACGAGCACC
ATTACCATGACGACCATCACGATGATCACCATGGAGATGAACACCATAAC
AGCCACCATGAACATCACCATGACGACCATCATGATCAAGGGTAAGTTTA
ACCTTTTGAACCTATCAAAACGTGTTTTAATTCACACAAAAGATCTATCT
TCAACTACACATTGTATAAAGGGATTGATTTGTTTTTCTTCACAACAGAT
ACGTAAAACATCACAATCCTCACCAATACGAACACCATGAATTGGACCAT
CCAGCACGTGATCATTACCATCAGACGACTGACCATGGAAGTTTTCATGG
ATCTCACCATGGCAACGATGATCACCATGATGATGATTTGTATTACGAGC
ATGAGCACACTTTCCCTACACCTTTGCACCAGTCATACCACACACCTTTA
TTCGCACCACCACAAAGAGAACTTCCCATGTTTCAAGTCCGATATCCTCA
CCATGATGATGAATACCATGACCATCATCACCGAAGAACTAACATCCAAG
ACCACAACAACAACTTTCAACCGCTCATAAAGAGAATAATCAACAGTCTG
AACATTGAAATTGTTGATATCAAGAAAAAATAAAATCGAGATTTTTGAAT
TCTTCTGTTGCAGACATCGAACAAATATGGTTGGTCGTATTTTTCGAATA
ATACTTTAACAGTGTTAAGACAACCTATGATACAGAGGCTTCTTTGTCGC
AACCTTCTGCAAAAATAATGAACTATGGATATTTAATTTCATGTTGTCAT
GAATTTCGATTGATACATGTAATTCTTCTGGAAAAAAAGAAGAGAATGAA
AATTAACCTATGCACATGGTGTTTAGTCCAAAACAAGATTTATGTAACAT
AGAAATAATAAATTATAAGATTTGTCAAATCTATTTACAGGGGTTGATCT
ACTTTAGATCGGTTATTTTTTTAAAGAAAAAATTATAAATACAAAAAACA
GTTTTTTGGGCTTTCTCTGAAAAGAGTCAAACAATTTACAATTTCACGCA
TTACTGTGGGATTCTTAAAATTGATAATTAGCGTAAGGGATAAGGTCATA
TTTTAGCATATGAATTAGCAAATTGTAACACATGAAAAAATATTTTAAAA
GTTCCCTATCTGATAACTTAAGTTAGGTAAACAGCCAATATGTACATTCA
CTTGAGTAAGGGTGAACCTTGTAATGTAATGACTCTTATTATAAGAATTC
CCAGGCTGTTAAAAATTTACTTTTCATGAAAATATATAAATATGAGAATT
TCTGTCTAAAAAAATAAAATTACTATGTACATTGTCAATGCTTAAAGAAA
ATTTCAAATAACACTATTGTCGAAAAGCCAATCCCTACATTGCATTTCAC
AGTATATCTCCTGAATTTCGAAACCTAACTATAACTCCTATTTCTCCTAA
ATTCAAATTAATACACTCTTCTCGAGATGCATAAATTTATTGTTGCCCTC
GTTTTCAAACAGATTTTATTGCTATAAAATTACATATTCACAATGATAAT
TGTGTTGTTCACACCTCATGAGACATTTTGAATTTCAAGTACTTTTGTTG
CCTTTTGGGAATTTAAATTGGTTTAAATGTATAATTTCATAGCAATGAAA
TGTGTTGAAAACGAGGACAACAATAAATTTATGCATCTCGAGAAGAGCGT
ATTGGTACAGTAAAAATTTCGTGAAAATGCAAAACAACATTTTTACAAAA
ACATTACTGAAAGAGGAATCTAATAAATCGGATCAGAACCCAAAACCTAA
ATGCCGCATTACCTCGCACCATAAAGTAAATGGAAACCTTGCTATGCTTT
TTCCTTAATATTTGAGCACTGGATATTTTATATAGATGCAGAAATGGCTC
ATATATTAGTTAGTTGGAATACTAAAAGGATATGTTTATTATCATGTATC
TCAGTGTTTTTCTTTAAAACCTGTATTATGGGGGAAAGCATGTAAGCATT
AGTAAATAGTATTCAATGATCCCTAAAAACGAAACAAAACACCAACAAAA
AAGCGACGATAATCAGCTTAAGATGTTATCCCCCGTCCCATCAAATGATG
ACTAATGATGACTATTGAATATTGGACGGGAACTGTCAATTTTAACATAT
ACTCAAATACAAGTATTTTCTGCGTTCGACGAGAAATGAAGAGTGGCTAC
CCTTTTCTAGATTCGAGTCGTATTCCGGGCAGTTCGTTATCATTTTGTGC
GTGTCAGAATGTGACATTAGTTAGTACACCAGTCAATAGAGTAGCAAACT
TTTTATTCGGAATTTTTTCACCGCTCACCTTATAATGATACGAAATCGTA
TTCTATTACCACCACCCCCGCCACCACCACCGCCTCCATTTTCATCATCA
TCATCATCTCCGTCGTCACTACTGAAAGAGTCCTCATCGCTGGAAAATGT
TCGATGCTTTTTCAATGAAACTGGCTTAGGGTGGTTGGCGTCGCGAAAAT
ATCGCAAATATTTGATCAATATTCTAGGTAATGGTAAGTCATCTAAAATA
TCTAGTTGAGCGAAGGAGATTTCATCTTCGGGTGCGGTCAAAGTGAAGAC
ACTTTGTAGAATGATTTGACGAGAAAGTTCTTTCAGTGTTGGTGGTTGTG
TAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00001109-exon-sc0000007-1575043694:348595..349601 | TCONS_00001109-exon-sc0000007-1575043694:348595..349601 | Clytia hemisphaerica | exon |
TCONS_00001109-exon-sc0000007-1575043694:347611..348478 | TCONS_00001109-exon-sc0000007-1575043694:347611..348478 | Clytia hemisphaerica | exon |
TCONS_00001109-exon-sc0000007-1575043694:345099..347503 | TCONS_00001109-exon-sc0000007-1575043694:345099..347503 | Clytia hemisphaerica | exon |
TCONS_00001109-exon-sc0000007-1510915933:348595..349601 | TCONS_00001109-exon-sc0000007-1510915933:348595..349601 | Clytia hemisphaerica | exon |
TCONS_00001109-exon-sc0000007-1510915933:347611..348478 | TCONS_00001109-exon-sc0000007-1510915933:347611..348478 | Clytia hemisphaerica | exon |
TCONS_00001109-exon-sc0000007-1510915933:345099..347503 | TCONS_00001109-exon-sc0000007-1510915933:345099..347503 | Clytia hemisphaerica | exon |
TCONS_00001109-exon-sc0000007-1491911889:348595..349601 | TCONS_00001109-exon-sc0000007-1491911889:348595..349601 | Clytia hemisphaerica | exon |
TCONS_00001109-exon-sc0000007-1491911889:347611..348478 | TCONS_00001109-exon-sc0000007-1491911889:347611..348478 | Clytia hemisphaerica | exon |
TCONS_00001109-exon-sc0000007-1491911889:345099..347503 | TCONS_00001109-exon-sc0000007-1491911889:345099..347503 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000007 | supercontig | sc0000007:345099..349601 - |
Blast
The following BLAST results are available for this feature:
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