|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001108 ID=TCONS_00001108|Name=TCONS_00001108|organism=Clytia hemisphaerica|type=transcript|length=2489bpRun BLAST on NCBI protein sequence of TCONS_00001108-protein >TCONS_00001108-protein ID=TCONS_00001108-protein|Name=TCONS_00001108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=573bp MPPKKPTTNSTNAKKGTVAPKQNIRKATTTKASPANAKSPGKVLKKSSSKRun BLAST on NCBI transcript from alignment at sc0000007:323392..332270- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001108 ID=TCONS_00001108|Name=TCONS_00001108|organism=Clytia hemisphaerica|type=transcript|length=8879bp|location=Sequence derived from alignment at sc0000007:323392..332270- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:323392..332270- >TCONS_00001108 ID=TCONS_00001108|Name=TCONS_00001108|organism=Clytia hemisphaerica|type=CDS|length=24108bp|location=Sequence derived from alignment at sc0000007:323392..332270- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001108 vs. Swiss-Prot (Human)
Match: YH010 (Putative IQ motif and ankyrin repeat domain-containing protein LOC642574 OS=Homo sapiens PE=5 SV=2) HSP 1 Score: 276.944 bits (707), Expect = 1.152e-81 Identity = 166/453 (36.64%), Postives = 254/453 (56.07%), Query Frame = 1 Query: 574 EAAFDGELQDLKKILKEVEENIRNICSNDDPETLKRKIKRTRMKFIECEDXXXXXXXXXXXXGGDLETVTFLLENGANINSIGHFHRTPLYRAAFGGHVDSLKKILTNGGDPRIVDLDGVLPEQVAATPEIISILQEWDHSKTEELLLQIHEKEDQIKSQEEAFXXXXXXXXXXXXXXXXT-DHQNKQKVLQKSYAELNKRIYEHDECVAKGFERTDVTLQSIHDAEIDLARAQRNEEEARKKLFEAKLHLREQKVEGGEEDDVRIAKCNFKELDQVLMLDVGDVVKNSG------------------------KWPLILDSSNQAVTFLKYRDTNYLNLLNPKDVEHETLRKALLGAMRFGKSLVLDMLEVDMFNFLETRLNEIQDNLYLDLINKELVTSNRYLKLIRKEDGKEYQKENFNQSRLERFQVVIISKIFDPPEAWMDTFYTLRI 1857
+AAFDG++ +++ +LKEVE+ + D R+++R R+ ECED+ N+ LSEA+AGG + E GA+ NS G F TPLYRAAFGGH+ +++ +L G DPR+ DG PE+VA+ ++S+L+ WD S T E +LQ E E Q ++QE K+ + T + Q K LQ++Y EL++RI EHD+C + ++T +TLQ+I D E + R ++ ++A + L A+L LREQ EG E++ KC EL VLM DVG+ ++ G +WPL++D QA TFL+Y+DTNY++ +NP+ + ET+ ALLGA+R+GK LV D+ E D+F ++ +L +Q+ RYL L+R DG EY F + RLE F++ ++K+ PP + +R+
Sbjct: 164 DAAFDGDVGEIRAVLKEVEQLLTREGVGHDEAGEARRLQR-RVALAECEDSYGNTPLSEAAAGGQPLAIQLRAELGASPNSKGAFGPTPLYRAAFGGHLAAVEVLLKLGADPRVYAEDGSTPERVASLDTVVSVLRSWDLSLT-EAMLQNMEAEQQRRAQEAQRHKEAEAERMTLKVQQLTREQQQCHKELQQAYCELSRRISEHDQCEWRCMDKTKLTLQAIKDTEAQVDRLRQEAQKAEEALAMARLELREQTQEG--EEEAPGLKCQVTELHDVLMKDVGNRIRADGRSVLRARRGRFGVWTDSSDLMGVPRWPLVIDPLGQAATFLRYQDTNYVDTVNPEPLRPETMWLALLGALRYGKPLVFDLREEDLFPVVQRQLEAVQE---------------RYLSLLRPTDGPEYSPTQFQEQRLEHFRLFFVTKVQWPPAEQLQVLLPVRV 597 The following BLAST results are available for this feature:
BLAST of TCONS_00001108 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
TCONS_00001108 (transcript) - C. hemisphaerica
|
Overview
|
