TCONS_00001107 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001107
Unique NameTCONS_00001107
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1934

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001107 ID=TCONS_00001107|Name=TCONS_00001107|organism=Clytia hemisphaerica|type=transcript|length=1934bp
CCAAAGGTGGTCAACAATCGAGGAGATATTGAGTGGCCCCCAAGATCACC
CAATCTCACTGtatgtgatttctttttgtggGGTTACATGAAACAACAGA
TCTCGCAGCAACACTAAAATTCGCATTCCCAGACCCTTGATAAATTGAAA
GCTTCAATCAGAAATGTTCCAGCTAACCTCAACAAATGACTCCTCATAAT
TTAATTTTATACTTTCTTTTTCCAATGCAAAATGATCGATTCTTTCAGAT
TCTTTAATAACAGTtgatagaactcgagaaaattcacttcaaagtgGCAC
AGAAAACTAGGTATGCCCACACCCACTGTTGTTGAAGCTAATGCCGTCAT
AAAAAATAGGGAAGATGTGGGATGGTTGTGTTAAGGGACTTGGAAAGCGT
TTTAAATAGatcaatttacaaaatttccatATTAAAGCTGTTGACGGGAT
CAGAGATATATAGCTATACTAGACTTTTAAGAAAGACTCAATAGGAAAGC
CTAGGTCGTGGTTTTCAGGAATGGACTTTGTTAAAGAATAGACATTTGAG
AAGCATCTCCATATacaatttataattgatttTAGATTcataagttttga
aaaattttagaaaaaaaaactgagCATGGCATTCTtgcaaaacattttta
aaagagGAATCAGTACCACTCTCAGGTCTCAAGCTTTCAATCAACCAACA
ACTTCAAAAGAAATGCTGAGAGCTGGAGGGATTGCATCCATGTATAGACT
TCCGATCCACAAGAATACTGAAGatcttgatgtttgttttgttggtATTC
CTTTGGATGTTGGTGCCAGCAACAGAACTGGCACAAGATTTGGCCCAAGA
GCTATTCGAACTGAATCAGTAATGGTACGCTCAATAAACAACGATACAGg
tgcTCGCCCATTTGAAAGCTTTCAAGTTGGAGATGTTGGAGATGTCTCCT
TCAATCAGTATAATTTAGAAGAAGCTTGTGGACAGATAAAAGTTCAGTAT
GATGAACTCATAAAAAATGGGTGTATTCCACTTACCATGGGAGGAGATCA
CACTTTGACTTACCCCATTCTCCAAGCCATACATGAGAAATATGGTAAAG
TATGTCTGGTTCACATCGATGCACATACTGATTTATATGGACCATTTTAT
GGTAGCAAAATATGGCATGGAAATCCTTTCGGTAATGCTGTTCAGGAGGG
TTTGTTAGATTGCAACCGCACTGTTCAAATTGGTCTCCGTGGTTCTGGAT
ATGGTGATGACTATGATGTTCCACGTAACCTTGGATTTCGAGTAGTTCCA
GCGAAAGATTGTTGGTGGAAATCAATGACTCCATTGATGGAGGAAGTTCG
TGAAATGATTGGAGATCGACCAGTTTATCTGTCTTTTGATATAGATTCAC
TCGATCCTGCGTATGCTCCTGGGACAGgtaCACCAGAGATAGGAGGATTA
ACATCAGTTCAAGCCATAGAAATCATCAGAGGGTGCAAAGGATTGAATAT
TGTTGGTGCTGATTGTGTTGAGGTATCGCCACCTTACGATGTAGGAGGAA
TGACGTCTATTCACGCTGCAAACTTGTTGTTTGAAATGCTTTGCATTCTA
CCAGGTGTCAAGCACAACGAATGATCGATAAGTGAATTATAAACAATGGG
GAACAAATGCACCATTTTAGAgaatatctttcaaattttatatttttttc
atagtcatgggaaatattttttttcaaaacagaaatttgaattattagaa
atttttatacattttataCATTTATACAGATTGtaaattttaatcatttt
tgaagCCGAAATATAGAAATTCATACACACTTATTTGatcttaaggtggt
agtctacccaaaaataaaaaatcatcgaaaaaattgtcgaattctggttt
ttgggtgttttgagatccttaggtctttctgaAC
Run BLAST on NCBI

protein sequence of TCONS_00001107-protein

>TCONS_00001107-protein ID=TCONS_00001107-protein|Name=TCONS_00001107-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MAFLQNIFKRGISTTLRSQAFNQPTTSKEMLRAGGIASMYRLPIHKNTED
LDVCFVGIPLDVGASNRTGTRFGPRAIRTESVMVRSINNDTGARPFESFQ
VGDVGDVSFNQYNLEEACGQIKVQYDELIKNGCIPLTMGGDHTLTYPILQ
AIHEKYGKVCLVHIDAHTDLYGPFYGSKIWHGNPFGNAVQEGLLDCNRTV
QIGLRGSGYGDDYDVPRNLGFRVVPAKDCWWKSMTPLMEEVREMIGDRPV
YLSFDIDSLDPAYAPGTGTPEIGGLTSVQAIEIIRGCKGLNIVGADCVEV
SPPYDVGGMTSIHAANLLFEMLCILPGVKHNE
Run BLAST on NCBI

transcript from alignment at sc0000007:304337..307579-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001107 ID=TCONS_00001107|Name=TCONS_00001107|organism=Clytia hemisphaerica|type=transcript|length=3243bp|location=Sequence derived from alignment at sc0000007:304337..307579- (Clytia hemisphaerica)
CCAAAGGTGGTCAACAATCGAGGAGATATTGAGTGGCCCCCAAGATCACC CAATCTCACTGTATGTGATTTCTTTTTGTGGGGTTACATGAAACAACAGA TCTCGCAGCAACACTAAAATTCGCATTCCCAGACCCTTGATAAATTGAAA GCTTCAATCAGAAATGTTCCAGCTAACCTCAACAAATGACTCCTCATAAT TTAATTTTATACTTTCTTTTTCCAATGCAAAATGATCGATTCTTTCAGAT TCTTTAATAACAGTTGATAGAACTCGAGAAAATTCACTTCAAAGTGGCAC AGAAAACTAGGTATGCCCACACCCACTGTTGTTGAAGCTAATGCCGTCAT AAAAAATAGGGAAGATGTGGGATGGTTGTGTTAAGGGACTTGGAAAGCGT TTTAAATAGATCAATTTACAAAATTTCCATATTAAAGCTGTTGACGGGAT CAGAGATATATAGCTATACTAGACTTTTAAGAAAGACTCAATAGGAAAGC CTAGGTCGTGGTTTTCAGGAATGGACTTTGTTAAAGAATAGACATTTGAG AAGCATCTCCATATACAATTTATAATTGATTTTAGATTCATAAGTTTTGA AAAATTTTAGAAAAAAAAACTGAGCATGGCATTCTTGCAAAACATTTTTA AAAGAGGAATCAGTACCACTCTCAGGTCTCAAGCTTTCAATCAACCAACA ACTTCAAAAGAAATGCTGAGAGCTGGAGGGATTGCATCCATGTATAGACT TCCGATCCACAAGAATACTGAAGGTAGAAAGGTTTTTATATATATCCTGA AAATAAGTATAATAAATGAATTTGTTTTTCTTTTTGAGTGCTATTACAAC CATGTAAAATTTCCCTTCAAACTACTATGATACATTCTCAACATATAACT CTTTTTTTATTTTTCAAGATCTTGATGTTTGTTTTGTTGGTATTCCTTTG GATGTTGGTGCCAGCAACAGAACTGGCACAAGATTTGGCCCAAGAGCTAT TCGAACTGAATCAGTAATGGTACGCTCAATAAACAACGATACAGGTAAAG TGTGCATATTTATAATTATGATACTGTATTTAGAAATCTTTTAAAAAAAT GATTGCTAACATATTGCTAGCTATCCAACAATATTCCAAAATAATATAAA TCTTCATTGATACTGCTTTTTTTTTTTTAGGTGCTCGCCCATTTGAAAGC TTTCAAGTTGGAGATGTTGGAGATGTCTCCTTCAATCAGTATAATTTAGA AGAAGCTTGTGGACAGATAAAAGTTCAGTATGATGAACTCATAAAAAATG GGTGTATTCCACTTACCATGGGAGGAGATCACACTTTGACTTACCCCATT CTCCAAGCCATACATGTAAGTGCACGAAAATCAAACATACAGACTTCATA CAAATTCGAAAAGGATTGCTAAAAAAGAAATAACCTGTAATGAGATAGGG CGTTCAGAAAATTGTACCTCTTCTCTCTATATACTACAGGAGAAATATGG TAAAGTATGTCTGGTTCACATCGATGCACATACTGATTTATATGGACCAT TTTATGGTAGCAAAATATGGCATGGAAATCCTTTCGGTAATGCTGTTCAG GAGGGTTTGTTAGATTGCAACCGCACTGTTCAAATTGGTCTCCGTGGTTC TGGATATGGTGATGACTATGATGTTCCACGTAACCTTGTAGGTTTTATAT TCTATTTTTCATTCTTCTTCTGTTATCAAAAGAACATTTCTTCGTGAATG AAGACCAGTATTAATTATAACACTTTCAATAAAGTTAGTTGCTAAAGTCT TACTTATACCATAGAATAGAAAGTAATGTTAAAATGTTGTTTAGGGATTT CGAGTAGTTCCAGCGAAAGATTGTTGGTGGAAATCAATGACTCCATTGAT GGAGGAAGTTCGTGAAATGATTGGAGATCGACCAGTTTATCTGTCTTTTG ATATAGATTCACTCGATCCTGCGTATGCTCCTGGGACAGGTATTTCTTAG GGCCAAGTAGTCTATTAGCATTTTCTGAAGTATCTATAACCATTGAATTT CATATATACCCGAACACAATTCTTGCAATGAATAATTATTCCTTATTTCA TTTTACTGCCTGTTTCCATTTTCACTTTCATAACTATTCACAGCAGCTCC TTTACTAAAACATGTTATTTATATGTTTATTTATATGTTTATATTTATAT GTTATATGTTATTGATATTGATATGTTATTATATATTACTCTATGGTAGA TATGAAGAAGTATCCTACAGCCTTTTACATGTGCAAAGCATGACACTTAT CATTATCAAAATTATTGGGTAGGGAAGAAAATCGATATGAATATCCGCAG AATTTTAACCTTTTTAATATATNTATGGTAGATATGAAGGATGTATCCTA CAGCCTTTAAATTAGTAAATCATGACACTTATCATTATCAAAATTATTGG GTAGGGAAGAAAATCGATATGAATATCCGCAGAATTTTAATCTTTTTAAT ATTTTATTTTTATAGGTACACCAGAGATAGGAGGATTAACATCAGTTCAA GCCATAGAAATCATCAGAGGGTGCAAAGGATTGAATATTGTTGGTGCTGA TTGTGTTGAGGTATGCTGTCCCTATCATCCCCAATTCTTCTCTATAGTGA CAAATAATATGGATAGTAGAAGCTATTTGTAACAGCTGCCAAAGATCAGG AAGTGGAGATAACATCACTAAATTATTTTCTCGTCCGTTTTTAGGTATCG CCACCTTACGATGTAGGAGGAATGACGTCTATTCACGCTGCAAACTTGTT GTTTGAAATGCTTTGCATTCTACCAGGTGTCAAGCACAACGAATGATCGA TAAGTGAATTATAAACAATGGGGAACATATTGTTAGGCGCACGCGTCCCT AATGACTGCAAAAAGTCATCTCTTTTTAATCGCATACGTCATTTTATTTA AACGCACAAAAACAAATGCACCATTTTAGAGAATATCTTTCAAATTTTAT ATTTTTTTCATAGTCATGGGAAATATTTTTTTTCAAAACAGAAATTTGAA TTATTAGAAATTTTTATACATTTTATACATTTATACAGATTGTAAATTTT AATCATTTTTGAAGCCGAAATATAGAAATTCATACACACTTATTTGATCT TAAGGTGGTAGTCTACCCAAAAATAAAAAATCATCGAAAAAATTGTCGAA TTCTGGTTTTTGGGTGTTTTGAGATCCTTAGGTCTTTCTGAAC

Coding sequence (CDS) from alignment at sc0000007:304337..307579-

>TCONS_00001107 ID=TCONS_00001107|Name=TCONS_00001107|organism=Clytia hemisphaerica|type=CDS|length=6993bp|location=Sequence derived from alignment at sc0000007:304337..307579- (Clytia hemisphaerica)
GTATCGCCACCTTACGATGTAGGAGGAATGACGTCTATTCACGCTGCAAA
CTTGTTGTTTGAAATGCTTTGCATTCTACCAGGTGTCAAGCACAACGAAT
GAGTACACCAGAGATAGGAGGATTAACATCAGTTCAAGCCATAGAAATCA
TCAGAGGGTGCAAAGGATTGAATATTGTTGGTGCTGATTGTGTTGAGGGA
TTTCGAGTAGTTCCAGCGAAAGATTGTTGGTGGAAATCAATGACTCCATT
GATGGAGGAAGTTCGTGAAATGATTGGAGATCGACCAGTTTATCTGTCTT
TTGATATAGATTCACTCGATCCTGCGTATGCTCCTGGGACAGGAGAAATA
TGGTAAAGTATGTCTGGTTCACATCGATGCACATACTGATTTATATGGAC
CATTTTATGGTAGCAAAATATGGCATGGAAATCCTTTCGGTAATGCTGTT
CAGGAGGGTTTGTTAGATTGCAACCGCACTGTTCAAATTGGTCTCCGTGG
TTCTGGATATGGTGATGACTATGATGTTCCACGTAACCTTGTGCTCGCCC
ATTTGAAAGCTTTCAAGTTGGAGATGTTGGAGATGTCTCCTTCAATCAGT
ATAATTTAGAAGAAGCTTGTGGACAGATAAAAGTTCAGTATGATGAACTC
ATAAAAAATGGGTGTATTCCACTTACCATGGGAGGAGATCACACTTTGAC
TTACCCCATTCTCCAAGCCATACATATCTTGATGTTTGTTTTGTTGGTAT
TCCTTTGGATGTTGGTGCCAGCAACAGAACTGGCACAAGATTTGGCCCAA
GAGCTATTCGAACTGAATCAGTAATGGTACGCTCAATAAACAACGATACA
GATGGCATTCTTGCAAAACATTTTTAAAAGAGGAATCAGTACCACTCTCA
GGTCTCAAGCTTTCAATCAACCAACAACTTCAAAAGAAATGCTGAGAGCT
GGAGGGATTGCATCCATGTATAGACTTCCGATCCACAAGAATACTGAAGG
TATCGCCACCTTACGATGTAGGAGGAATGACGTCTATTCACGCTGCAAAC
TTGTTGTTTGAAATGCTTTGCATTCTACCAGGTGTCAAGCACAACGAATG
AGTACACCAGAGATAGGAGGATTAACATCAGTTCAAGCCATAGAAATCAT
CAGAGGGTGCAAAGGATTGAATATTGTTGGTGCTGATTGTGTTGAGGGAT
TTCGAGTAGTTCCAGCGAAAGATTGTTGGTGGAAATCAATGACTCCATTG
ATGGAGGAAGTTCGTGAAATGATTGGAGATCGACCAGTTTATCTGTCTTT
TGATATAGATTCACTCGATCCTGCGTATGCTCCTGGGACAGGAGAAATAT
GGTAAAGTATGTCTGGTTCACATCGATGCACATACTGATTTATATGGACC
ATTTTATGGTAGCAAAATATGGCATGGAAATCCTTTCGGTAATGCTGTTC
AGGAGGGTTTGTTAGATTGCAACCGCACTGTTCAAATTGGTCTCCGTGGT
TCTGGATATGGTGATGACTATGATGTTCCACGTAACCTTGTGCTCGCCCA
TTTGAAAGCTTTCAAGTTGGAGATGTTGGAGATGTCTCCTTCAATCAGTA
TAATTTAGAAGAAGCTTGTGGACAGATAAAAGTTCAGTATGATGAACTCA
TAAAAAATGGGTGTATTCCACTTACCATGGGAGGAGATCACACTTTGACT
TACCCCATTCTCCAAGCCATACATATCTTGATGTTTGTTTTGTTGGTATT
CCTTTGGATGTTGGTGCCAGCAACAGAACTGGCACAAGATTTGGCCCAAG
AGCTATTCGAACTGAATCAGTAATGGTACGCTCAATAAACAACGATACAG
ATGGCATTCTTGCAAAACATTTTTAAAAGAGGAATCAGTACCACTCTCAG
GTCTCAAGCTTTCAATCAACCAACAACTTCAAAAGAAATGCTGAGAGCTG
GAGGGATTGCATCCATGTATAGACTTCCGATCCACAAGAATACTGAAGGT
ATCGCCACCTTACGATGTAGGAGGAATGACGTCTATTCACGCTGCAAACT
TGTTGTTTGAAATGCTTTGCATTCTACCAGGTGTCAAGCACAACGAATGA
GTACACCAGAGATAGGAGGATTAACATCAGTTCAAGCCATAGAAATCATC
AGAGGGTGCAAAGGATTGAATATTGTTGGTGCTGATTGTGTTGAGGGATT
TCGAGTAGTTCCAGCGAAAGATTGTTGGTGGAAATCAATGACTCCATTGA
TGGAGGAAGTTCGTGAAATGATTGGAGATCGACCAGTTTATCTGTCTTTT
GATATAGATTCACTCGATCCTGCGTATGCTCCTGGGACAGGAGAAATATG
GTAAAGTATGTCTGGTTCACATCGATGCACATACTGATTTATATGGACCA
TTTTATGGTAGCAAAATATGGCATGGAAATCCTTTCGGTAATGCTGTTCA
GGAGGGTTTGTTAGATTGCAACCGCACTGTTCAAATTGGTCTCCGTGGTT
CTGGATATGGTGATGACTATGATGTTCCACGTAACCTTGTGCTCGCCCAT
TTGAAAGCTTTCAAGTTGGAGATGTTGGAGATGTCTCCTTCAATCAGTAT
AATTTAGAAGAAGCTTGTGGACAGATAAAAGTTCAGTATGATGAACTCAT
AAAAAATGGGTGTATTCCACTTACCATGGGAGGAGATCACACTTTGACTT
ACCCCATTCTCCAAGCCATACATATCTTGATGTTTGTTTTGTTGGTATTC
CTTTGGATGTTGGTGCCAGCAACAGAACTGGCACAAGATTTGGCCCAAGA
GCTATTCGAACTGAATCAGTAATGGTACGCTCAATAAACAACGATACAGA
TGGCATTCTTGCAAAACATTTTTAAAAGAGGAATCAGTACCACTCTCAGG
TCTCAAGCTTTCAATCAACCAACAACTTCAAAAGAAATGCTGAGAGCTGG
AGGGATTGCATCCATGTATAGACTTCCGATCCACAAGAATACTGAAGGTA
TCGCCACCTTACGATGTAGGAGGAATGACGTCTATTCACGCTGCAAACTT
GTTGTTTGAAATGCTTTGCATTCTACCAGGTGTCAAGCACAACGAATGAG
TACACCAGAGATAGGAGGATTAACATCAGTTCAAGCCATAGAAATCATCA
GAGGGTGCAAAGGATTGAATATTGTTGGTGCTGATTGTGTTGAGGGATTT
CGAGTAGTTCCAGCGAAAGATTGTTGGTGGAAATCAATGACTCCATTGAT
GGAGGAAGTTCGTGAAATGATTGGAGATCGACCAGTTTATCTGTCTTTTG
ATATAGATTCACTCGATCCTGCGTATGCTCCTGGGACAGGAGAAATATGG
TAAAGTATGTCTGGTTCACATCGATGCACATACTGATTTATATGGACCAT
TTTATGGTAGCAAAATATGGCATGGAAATCCTTTCGGTAATGCTGTTCAG
GAGGGTTTGTTAGATTGCAACCGCACTGTTCAAATTGGTCTCCGTGGTTC
TGGATATGGTGATGACTATGATGTTCCACGTAACCTTGTGCTCGCCCATT
TGAAAGCTTTCAAGTTGGAGATGTTGGAGATGTCTCCTTCAATCAGTATA
ATTTAGAAGAAGCTTGTGGACAGATAAAAGTTCAGTATGATGAACTCATA
AAAAATGGGTGTATTCCACTTACCATGGGAGGAGATCACACTTTGACTTA
CCCCATTCTCCAAGCCATACATATCTTGATGTTTGTTTTGTTGGTATTCC
TTTGGATGTTGGTGCCAGCAACAGAACTGGCACAAGATTTGGCCCAAGAG
CTATTCGAACTGAATCAGTAATGGTACGCTCAATAAACAACGATACAGAT
GGCATTCTTGCAAAACATTTTTAAAAGAGGAATCAGTACCACTCTCAGGT
CTCAAGCTTTCAATCAACCAACAACTTCAAAAGAAATGCTGAGAGCTGGA
GGGATTGCATCCATGTATAGACTTCCGATCCACAAGAATACTGAAGGTAT
CGCCACCTTACGATGTAGGAGGAATGACGTCTATTCACGCTGCAAACTTG
TTGTTTGAAATGCTTTGCATTCTACCAGGTGTCAAGCACAACGAATGAGT
ACACCAGAGATAGGAGGATTAACATCAGTTCAAGCCATAGAAATCATCAG
AGGGTGCAAAGGATTGAATATTGTTGGTGCTGATTGTGTTGAGGGATTTC
GAGTAGTTCCAGCGAAAGATTGTTGGTGGAAATCAATGACTCCATTGATG
GAGGAAGTTCGTGAAATGATTGGAGATCGACCAGTTTATCTGTCTTTTGA
TATAGATTCACTCGATCCTGCGTATGCTCCTGGGACAGGAGAAATATGGT
AAAGTATGTCTGGTTCACATCGATGCACATACTGATTTATATGGACCATT
TTATGGTAGCAAAATATGGCATGGAAATCCTTTCGGTAATGCTGTTCAGG
AGGGTTTGTTAGATTGCAACCGCACTGTTCAAATTGGTCTCCGTGGTTCT
GGATATGGTGATGACTATGATGTTCCACGTAACCTTGTGCTCGCCCATTT
GAAAGCTTTCAAGTTGGAGATGTTGGAGATGTCTCCTTCAATCAGTATAA
TTTAGAAGAAGCTTGTGGACAGATAAAAGTTCAGTATGATGAACTCATAA
AAAATGGGTGTATTCCACTTACCATGGGAGGAGATCACACTTTGACTTAC
CCCATTCTCCAAGCCATACATATCTTGATGTTTGTTTTGTTGGTATTCCT
TTGGATGTTGGTGCCAGCAACAGAACTGGCACAAGATTTGGCCCAAGAGC
TATTCGAACTGAATCAGTAATGGTACGCTCAATAAACAACGATACAGATG
GCATTCTTGCAAAACATTTTTAAAAGAGGAATCAGTACCACTCTCAGGTC
TCAAGCTTTCAATCAACCAACAACTTCAAAAGAAATGCTGAGAGCTGGAG
GGATTGCATCCATGTATAGACTTCCGATCCACAAGAATACTGAAGGTATC
GCCACCTTACGATGTAGGAGGAATGACGTCTATTCACGCTGCAAACTTGT
TGTTTGAAATGCTTTGCATTCTACCAGGTGTCAAGCACAACGAATGAGTA
CACCAGAGATAGGAGGATTAACATCAGTTCAAGCCATAGAAATCATCAGA
GGGTGCAAAGGATTGAATATTGTTGGTGCTGATTGTGTTGAGGGATTTCG
AGTAGTTCCAGCGAAAGATTGTTGGTGGAAATCAATGACTCCATTGATGG
AGGAAGTTCGTGAAATGATTGGAGATCGACCAGTTTATCTGTCTTTTGAT
ATAGATTCACTCGATCCTGCGTATGCTCCTGGGACAGGAGAAATATGGTA
AAGTATGTCTGGTTCACATCGATGCACATACTGATTTATATGGACCATTT
TATGGTAGCAAAATATGGCATGGAAATCCTTTCGGTAATGCTGTTCAGGA
GGGTTTGTTAGATTGCAACCGCACTGTTCAAATTGGTCTCCGTGGTTCTG
GATATGGTGATGACTATGATGTTCCACGTAACCTTGTGCTCGCCCATTTG
AAAGCTTTCAAGTTGGAGATGTTGGAGATGTCTCCTTCAATCAGTATAAT
TTAGAAGAAGCTTGTGGACAGATAAAAGTTCAGTATGATGAACTCATAAA
AAATGGGTGTATTCCACTTACCATGGGAGGAGATCACACTTTGACTTACC
CCATTCTCCAAGCCATACATATCTTGATGTTTGTTTTGTTGGTATTCCTT
TGGATGTTGGTGCCAGCAACAGAACTGGCACAAGATTTGGCCCAAGAGCT
ATTCGAACTGAATCAGTAATGGTACGCTCAATAAACAACGATACAGATGG
CATTCTTGCAAAACATTTTTAAAAGAGGAATCAGTACCACTCTCAGGTCT
CAAGCTTTCAATCAACCAACAACTTCAAAAGAAATGCTGAGAGCTGGAGG
GATTGCATCCATGTATAGACTTCCGATCCACAAGAATACTGAAGGTATCG
CCACCTTACGATGTAGGAGGAATGACGTCTATTCACGCTGCAAACTTGTT
GTTTGAAATGCTTTGCATTCTACCAGGTGTCAAGCACAACGAATGAGTAC
ACCAGAGATAGGAGGATTAACATCAGTTCAAGCCATAGAAATCATCAGAG
GGTGCAAAGGATTGAATATTGTTGGTGCTGATTGTGTTGAGGGATTTCGA
GTAGTTCCAGCGAAAGATTGTTGGTGGAAATCAATGACTCCATTGATGGA
GGAAGTTCGTGAAATGATTGGAGATCGACCAGTTTATCTGTCTTTTGATA
TAGATTCACTCGATCCTGCGTATGCTCCTGGGACAGGAGAAATATGGTAA
AGTATGTCTGGTTCACATCGATGCACATACTGATTTATATGGACCATTTT
ATGGTAGCAAAATATGGCATGGAAATCCTTTCGGTAATGCTGTTCAGGAG
GGTTTGTTAGATTGCAACCGCACTGTTCAAATTGGTCTCCGTGGTTCTGG
ATATGGTGATGACTATGATGTTCCACGTAACCTTGTGCTCGCCCATTTGA
AAGCTTTCAAGTTGGAGATGTTGGAGATGTCTCCTTCAATCAGTATAATT
TAGAAGAAGCTTGTGGACAGATAAAAGTTCAGTATGATGAACTCATAAAA
AATGGGTGTATTCCACTTACCATGGGAGGAGATCACACTTTGACTTACCC
CATTCTCCAAGCCATACATATCTTGATGTTTGTTTTGTTGGTATTCCTTT
GGATGTTGGTGCCAGCAACAGAACTGGCACAAGATTTGGCCCAAGAGCTA
TTCGAACTGAATCAGTAATGGTACGCTCAATAAACAACGATACAGATGGC
ATTCTTGCAAAACATTTTTAAAAGAGGAATCAGTACCACTCTCAGGTCTC
AAGCTTTCAATCAACCAACAACTTCAAAAGAAATGCTGAGAGCTGGAGGG
ATTGCATCCATGTATAGACTTCCGATCCACAAGAATACTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000624XLOC_000624Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001107-proteinTCONS_00001107-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001107-exon-sc0000007-1575043694:306807..307579TCONS_00001107-exon-sc0000007-1575043694:306807..307579Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:306536..306661TCONS_00001107-exon-sc0000007-1575043694:306536..306661Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:306215..306399TCONS_00001107-exon-sc0000007-1575043694:306215..306399Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:305893..306090TCONS_00001107-exon-sc0000007-1575043694:305893..306090Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:305591..305735TCONS_00001107-exon-sc0000007-1575043694:305591..305735Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:304970..305064TCONS_00001107-exon-sc0000007-1575043694:304970..305064Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:304704..304835TCONS_00001107-exon-sc0000007-1575043694:304704..304835Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1575043694:304337..304616TCONS_00001107-exon-sc0000007-1575043694:304337..304616Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:306807..307579TCONS_00001107-exon-sc0000007-1510915933:306807..307579Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:306536..306661TCONS_00001107-exon-sc0000007-1510915933:306536..306661Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:306215..306399TCONS_00001107-exon-sc0000007-1510915933:306215..306399Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:305893..306090TCONS_00001107-exon-sc0000007-1510915933:305893..306090Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:305591..305735TCONS_00001107-exon-sc0000007-1510915933:305591..305735Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:304970..305064TCONS_00001107-exon-sc0000007-1510915933:304970..305064Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:304704..304835TCONS_00001107-exon-sc0000007-1510915933:304704..304835Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1510915933:304337..304616TCONS_00001107-exon-sc0000007-1510915933:304337..304616Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:306807..307579TCONS_00001107-exon-sc0000007-1491911889:306807..307579Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:306536..306661TCONS_00001107-exon-sc0000007-1491911889:306536..306661Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:306215..306399TCONS_00001107-exon-sc0000007-1491911889:306215..306399Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:305893..306090TCONS_00001107-exon-sc0000007-1491911889:305893..306090Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:305591..305735TCONS_00001107-exon-sc0000007-1491911889:305591..305735Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:304970..305064TCONS_00001107-exon-sc0000007-1491911889:304970..305064Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:304704..304835TCONS_00001107-exon-sc0000007-1491911889:304704..304835Clytia hemisphaericaexon
TCONS_00001107-exon-sc0000007-1491911889:304337..304616TCONS_00001107-exon-sc0000007-1491911889:304337..304616Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:304337..307579 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.4938 2.33687 3.58825 4.27018 23.6113 16.6041 22.4994 26.7977 36.8982 34.246 32.7647 27.1458 38.9136 38.1608 77.3585 86.2795 23.8199 22.5811 23.8247 29.503 10.8697 9.67773 17.7141 15.9115 8.81059 9.78267 26.1511 21.2437 38.2359 32.0666
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006035Ureohydrolase
IPR005925Agmatinase-rel
IPR020855Ureohydrolase_Mn_BS
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0016813hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines
molecular_function GO:0046872 metal ion binding
Blast
BLAST of TCONS_00001107 vs. Swiss-Prot (Human)
Match: SPEB (Agmatinase, mitochondrial OS=Homo sapiens GN=AGMAT PE=1 SV=2)

HSP 1 Score: 389.423 bits (999), Expect = 1.993e-129
Identity = 183/308 (59.42%), Postives = 232/308 (75.32%), Query Frame = 2
Query:  689 NQPTTSKEMLRAGGIASMYRLPIHKNTEDLDVCFVGIPLDVGASNRTGTRFGPRAIRTESVMVRSINNDTGARPFESFQVGDVGDVSFNQYNLEEACGQIKVQYDELIKNGCIPLTMGGDHTLTYPILQAIHEKYGKVCLVHIDAHTDLYGPFYGSKIWHGNPFGNAVQEGLLDCNRTVQIGLRGSGYG-DDYDVPRNLGFRVVPAKDCWWKSMTPLMEEVREMIGDRPVYLSFDIDSLDPAYAPGTGTPEIGGLTSVQAIEIIRGCKGLNIVGADCVEVSPPYDVGGMTSIHAANLLFEMLCILPGV 1609
            NQP + + + R  G+ SM RLP+  + E LD  F+G+PLD G SNR G RFGPR IR ESVM+ ++N  TGA PF+S  V D+GDV+ N YNL+++C +I+  Y++++  GCIPLT+GGDHT+TYPILQA+ +K+G V L+H+DAHTD      G K++HG PF   V EGLLDC R VQIG+RGS    D Y   R+ GFRVV A+DCW KS+ PLM EVR+ +G +P+Y+SFDID+LDPAYAPGTGTPEI GLT  QA+EIIRGC+GLN++G D VEVSPPYD+ G T++ AANLLFEMLC LP V
Sbjct:   42 NQPPSPEFVARPVGVCSMMRLPVQTSPEGLDAAFIGVPLDTGTSNRPGARFGPRRIREESVMLGTVNPSTGALPFQSLMVADLGDVNVNLYNLQDSCRRIQEAYEKIVAAGCIPLTLGGDHTITYPILQAMAKKHGPVGLLHVDAHTDTTDKALGEKLYHGAPFRRCVDEGLLDCKRVVQIGIRGSSTTLDPYRYNRSQGFRVVLAEDCWMKSLVPLMGEVRQQMGGKPIYISFDIDALDPAYAPGTGTPEIAGLTPSQALEIIRGCQGLNVMGCDLVEVSPPYDLSGNTALLAANLLFEMLCALPKV 349          
The following BLAST results are available for this feature:
BLAST of TCONS_00001107 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPEB1.993e-12959.42Agmatinase, mitochondrial OS=Homo sapiens GN=AGMAT... [more]
back to top