TCONS_00001105 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001105
Unique Name	TCONS_00001105
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	331

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000007:271794..275762-

transcript sequence

>TCONS_00001105 ID=TCONS_00001105|Name=TCONS_00001105|organism=Clytia hemisphaerica|type=transcript|length=331bp
CCGCGCGGGATCGAACAGTGTTCGCGCGCACGTCAAAATGGCCGACCAAA
TTTCTgaaactttttctgaaaatttgtgAAGAAACAACGAGAAAGCTTTT
GTTTTTGAGAAGATTCTATTATCATTCGGATACGACCGGCTGATGTTATT
CCGTAAAGTGCATCATAACCGGCAGCGATATCATACAATTTCAATCCATC
AATCTGCTCCCAACCTGTACCGGACATTTGTACGACGGAACACATTATAA
TAATCTTGATCTAAAGCCCAAACATTACCACCAAAACCTGCGGAAATCTT
ACGGAATTTACCATTAATCCAGGTAGCTGTT

Run BLAST on NCBI

transcript from alignment at sc0000007:271794..275762-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001105 ID=TCONS_00001105|Name=TCONS_00001105|organism=Clytia hemisphaerica|type=transcript|length=3969bp|location=Sequence derived from alignment at sc0000007:271794..275762- (Clytia hemisphaerica)
CCGCGCGGGATCGAACAGTGTTCGCGCGCACGTCAAAATGGCCGACCAAA
TTTCTGAAACTTTTTCTGAAAATTTGTGAAGAAACAACGAGAAAGCTTTT
GTTTTTGAGAAGATTCTATTATCATTCGGTATGTATAAGTAATTGTAAGT
CATGAGTTTCAACAAGCTAGCTATATATACCAGTCGGTCGTAATTGATAA
AATCGATCATCGATTTAAAGTGTGAATAGACAAGTCAAGAGAGCAGCCAC
CGGCTGGCTAGGAAGTATGAAATATCTGTTCTTGAGGTCCCTTTCTCCTG
GAAAAAACTATCTGTTCTGTATCCTAGGATATTGACTGATTTTACGACAC
TTGCAACCAATTAGCAGTGCGTCTCAAACCGCGATATTTCGAGAGCACGG
AAGCACGTCAAAACACCAGCTTTTTTAGAGTTTTGTCTCGTTTACCCAAA
CGCTGCAATCCTGCGTAGGCTTTGGGCTCAAGACTAGAACCCCCANNNNN
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NNNNNTATTGTGGAAGGGAACGCTTGAGACGAATGTTTGGGAAATCAAAA
AGACAACTTTTGTGAGAATGTTGAGTTTTGTTTATATGGCTGTTTGTGTC
GCACTGATTAGCTGTTGGTCTATGGTGCGATGTCGAAGAAGACATTGCAG
TGATGCCTAAAGAATAGCGAATTATCCAAGGTTATAAATGCACTTTCAAT
TACCTGTGAATTTCAGGATACGACCGGCTGATGTTATTCCGTAAAGTGCA
TCATAACCGGCAGCGATATCATACAATTTCAATCCATCAATCTGCTCCCA
ACCTGTACCGGACATTTGTACGACGGAACACATTATAATAATCTTGATCT
AAAGCCCAAACATTACCACCAAAACCTGCGGAAATCTTACGGAATTTACC
ATTAATCCAGGTAGCTGTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000622	XLOC_000622	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001105-exon-sc0000007-1575043694:275635..275762	TCONS_00001105-exon-sc0000007-1575043694:275635..275762	Clytia hemisphaerica	exon
TCONS_00001105-exon-sc0000007-1575043694:271794..271996	TCONS_00001105-exon-sc0000007-1575043694:271794..271996	Clytia hemisphaerica	exon
TCONS_00001105-exon-sc0000007-1510915933:275635..275762	TCONS_00001105-exon-sc0000007-1510915933:275635..275762	Clytia hemisphaerica	exon
TCONS_00001105-exon-sc0000007-1510915933:271794..271996	TCONS_00001105-exon-sc0000007-1510915933:271794..271996	Clytia hemisphaerica	exon
TCONS_00001105-exon-sc0000007-1491911889:275635..275762	TCONS_00001105-exon-sc0000007-1491911889:275635..275762	Clytia hemisphaerica	exon
TCONS_00001105-exon-sc0000007-1491911889:271794..271996	TCONS_00001105-exon-sc0000007-1491911889:271794..271996	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000007	supercontig	sc0000007:271794..275762 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.74476	3.11926	0.987753	2.89909	0.784302	1.23953	1.8693	1.40002	1.83996	2.1247	0.910703	2.37768	4.31209	3.61521	4.0444	3.0234	4.43174	3.05343	6.1824	2.2643	3.70392	3.51499	4.00102	2.49135	2.4977	3.06506	8.55431	5.10649	7.21854	7.89214

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00001105 vs. Swiss-Prot (Human)

BLAST of TCONS_00001105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00001105 (transcript) - C. hemisphaerica