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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001100 ID=TCONS_00001100|Name=TCONS_00001100|organism=Clytia hemisphaerica|type=transcript|length=2192bpRun BLAST on NCBI protein sequence of TCONS_00001100-protein >TCONS_00001100-protein ID=TCONS_00001100-protein|Name=TCONS_00001100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=695bp MHNKKRYNSTKPNECRMTINTSSVDSEEIEMTNGDQVEDEEAEEENILFARun BLAST on NCBI transcript from alignment at sc0000007:165814..176071- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00001100 ID=TCONS_00001100|Name=TCONS_00001100|organism=Clytia hemisphaerica|type=transcript|length=10258bp|location=Sequence derived from alignment at sc0000007:165814..176071- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000007:165814..176071- >TCONS_00001100 ID=TCONS_00001100|Name=TCONS_00001100|organism=Clytia hemisphaerica|type=CDS|length=35445bp|location=Sequence derived from alignment at sc0000007:165814..176071- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00001100 vs. Swiss-Prot (Human)
Match: UBP15 (Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15 PE=1 SV=3) HSP 1 Score: 557.755 bits (1436), Expect = 0.000e+0 Identity = 278/600 (46.33%), Postives = 404/600 (67.33%), Query Frame = 3
Query: 306 GQSWYMLDKHWYKQLKKYIEIGADNVDP-----ESENPGPIDNTPLFETA-SQNVREHLLEGSEFKLINKRGWKRLLTQFGLAEGQEPLQRTVIEHGIFRKEAKVEIYPLRLQICLFKNLENEIVKMISKTTTLDIVVKIMKEGLGIPEDEEVRLWSKFMQNTYELLLINQAKP-TTLQDHGINSGQTLVLEQKNEENKWPRQTRTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRQHSTTY----------------KPGLCGLSNLGNTCFMNSALQCLSNTTPLMKYFLANTHKSELNPTNPLGMNGKVAEGYADLMHQMWSGNQSHVSPRQFKMTVGRFAPRFSGYQQQDSQELLAFLLDGLHEDLNRVKQKPYIEIPDDKGRADEVLAQEAWTNHSKRNDSVITDNFHGLFKSTVECPECGKRSITFDPFCYLSLPLPIKRERTLKITFVPIDHSKRPIQMKVTIPKLGQTIALCEAVSKLTGVEPDKMIITDVFNSKFHKRFTRNESLSQITDKDDIFVYEIPVRIKEIDESNLAVVPIYMKTVVARSTYSSYPSTSLFWRPMLVVVPKKAANADDVYHIIIKAMRRF 2036
G +WY++D W+KQ KKY+ G D+ D ++ PGPIDN+ L + +Q+++EHL++ ++ L+ GW +L++ + L EGQEP+ R V+E G+F K KVE+Y L++C N+ N + + SK T+D + K +++ IP+++E RLW+K+M NT+E L KP +T+QD G+ GQ LV+EQKNE+ WPR T G+S+ + SPS S + + + +Y +PGLCGLSNLGNTCFMNSA+QCLSNT PL +YFL + ++ ELN NPLGM G++A+ YA+L+ QMWSG S+V+PR FK VGRFAP+FSGYQQQD QELLAFLLDGLHEDLNR+++KPYI++ D GR D+V+A+EAW NH KRNDS+I D FHGLFKST+ CPEC K S+TFDPFCYL+LPLP+K+ERTL++ V +D +P+Q KV +PK+G + LC A+S L+G+ DKMI+TD++N +FH+ F +E+LS I ++DDI+V+EI I +++ ++P+ ++ S+Y+ + +SLF +P L+ VP+ D +Y++++ M R+
Sbjct: 27 GDTWYLVDSRWFKQWKKYV--GFDSWDKYQMGDQNVYPGPIDNSGLLKDGDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVEQGMFVKHCKVEVYLTELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPL----NKPDSTIQDAGLYQGQVLVIEQKNEDGTWPRGPSTPKSPGASNFSTLPKISPSSLSNNYNNMNNRNVKNSNYCLPSYTAYKNYDYSEPGRNNEQPGLCGLSNLGNTCFMNSAIQCLSNTPPLTEYFLNDKYQEELNFDNPLGMRGEIAKSYAELIKQMWSGKFSYVTPRAFKTQVGRFAPQFSGYQQQDCQELLAFLLDGLHEDLNRIRKKPYIQLKDADGRPDKVVAEEAWENHLKRNDSIIVDIFHGLFKSTLVCPECAKISVTFDPFCYLTLPLPMKKERTLEVYLVRMDPLTKPMQYKVVVPKIGNILDLCTALSALSGIPADKMIVTDIYNHRFHRIFAMDENLSSIMERDDIYVFEI--NINRTEDTEHVIIPVCLREKFRHSSYTHHTGSSLFGQPFLMAVPRNNTE-DKLYNLLLLRMCRY 617 The following BLAST results are available for this feature:
BLAST of TCONS_00001100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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