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TCONS_00001090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001090
Unique NameTCONS_00001090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2723

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001090 ID=TCONS_00001090|Name=TCONS_00001090|organism=Clytia hemisphaerica|type=transcript|length=2723bp
aataattttttgatattttagagATTGATATCCATGCGGAATGATGGACG
CCAAAGGAATAACTCGTCAAGTTTAAGATGGTGATGCTTCTGCTTGCCAT
TTGGTTTTATGGTATAACAGCAACAACGATACAGAATGAATTTTCATCCA
CTTTTACATCCATCGAACTTGCTTCGATTTCTCCATCCGCCAGTTCGATG
AAAACCAACACCCTAAATGAACCTTCCCGAACACCACCCACTCAAAGctC
CCTGGAGCACACGTCAACTGTTGCTACAAATTATTTGGTGACGCCCAACA
ATCTCGCAACATCGCAGTCAGACTCGCCAACATCCGCAAAAGCTATGACC
ACTGATTCAAAGAGTTCGTCTCCTAAGAACATTCAACCAAGCACATCTAC
GAGAGAAATAGTCTCATTGACAACCTCCATTATATCCCTACCACCATCAA
GAAAACCCTCCACTACTCAACAACCAACCACAACCACAACGCAACCACCT
TTGCCAGCATTTAAGCAAAATATTGATGATACCAGTATATTTGTTTTGCT
ACCTTTGTCTTATCCTGTCGACAGCTGGGAAGAGATCACTGTTTATGTCG
TCATTCCTTCACTTGGTTACAAGTCAACGGGCTCATGGTACAGAATTTTc
atcaagaaagaaaaacacgACCGTTACCCTGCACTTGTCATGAAGCCCAA
GCAACTTTCGAACGATCCACGTCGAAAAAGAAGAAGTGCAGCCAAATTCT
TGAACATCAAACTTGGCATCAGTAAAGACTGTACTAAAGTCGATCAAGAG
ATTTGTAATGGTCCTCTAACTCCCTCAACTAACTACAGTATTCAGTTGGA
AGTCTTCTTCACCAATGGAACATCTTTGACAACCCCCTCCTCAAAACCCT
GGTCTACTTTACAAAAAGcGGTGATCGTGCCACAAGAAGGTGTTCGTTCA
TCTGTCGTCATCATCATCCTCACCGTCCTTCTCGTCTTCTTCATCTTTCT
CACCATCATCATCACAATCATCGTCTGCCGTAAGAAACGATCACGAAAAT
ATCTCAGAGGGCAGCAAGACAAGGACAGTATGGGTGTGTCCCTCATGTCC
ACCAACTATCAGAGGAATGGGGCGAGCAGGTTGAAGAAGAAATTCTCAGG
ACCAGATATTCTCACTGAGcgacgaaaaagtctgaaaggAATGACGAGAC
CTGTCTTCATCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGCATCGGAT
AGTACCTTTCGTTTTGCCGAAGAATTTGAGTCTATACGGGATGTCGGGAA
ATTTGAGAGGCATGAAGTTGCTGACATGGCAGAAAATAACGGCAAAAACC
GATACGTCAACGTCTTACCATACGATTATACGCGAGTGAAACTATCGAGT
ATAGACGACGAACCTGGTTCGGACTATATCAACGCTAATTATATTCACGG
TTACAAGCAACCACGAGCATACATAGCCACACAAGGACCCCTCCCAAGTA
CCACAGACCACTTCTGGCAGATGGTCTGGGAACAAAAATCTCGAATCATT
GTCATGGTTACGCAATGCAATGAGAAGAATCGTGTAAAATGTCATCAATA
TTGGCCTGCATCAGGTTCGACGCGATACGGAGAAATCGAAGTAACGCTTA
AGCACGAAACAATATATCCAGAATGGACCGAACGGGAATTTCTAATGACA
TTCGAGggCGAATCTCGATTACTCAGACATTTTCAATACACAGCATGGCC
TGACCACGGCGTACCTCGCTCATCTAAAGAAATGTTACAGTTCGTGACGA
CCGTTCGGTTTCATCAACGGCCCGATGACGGCCCTGTCATCTGTCATTGC
TCgGCGGGAGTTGGGCGCACAGGAACTTACTTGTGTGTTGATATTCTGGT
CAATAAACTACAGACCGAAAACAATGTAGATGTTTATGGTGTAGTGTGTT
TAATGAGGACTCAACGATGCTCCATGGTGCAGACTGAGGACCAATACATC
TTCATTCACCGAGTCATATTGGACTATTTGAAACAACGTGACGAAAAGCA
ACAAATCTTTTCCGGATATTCGACCTTAGAAATGCGAAGGAAAAGTAAAA
GTGAATCCAATCCTGTCGAACCTGCGGCTGAAGCATTattgaaagaagaa
gaaaaagaagacgaGGAAGATGAAAATCTggataatgatgatgatgaaac
gAAATCTGACGATTTTCTTTCCGAAGAATTCGAGAACAGCGATTTAGAAA
CACCTCCTGTATAATACGCATACTACCTCTTCATATTTgtagactttttt
ttgactttatgtTGTGTAGAAAGAAAATGGATGCCCTTTTATCGGGTAGG
ATTTCATCTTAACAAGTGATGATCAAATATCACTCACCATGCATCTCCCT
CATACTTCGttctttaaaacatttttattgtaatttctttttaaatggaA
ATTGTAAATAGGTACactagaaatttaatttttattttgaaattttatat
aaaTAGCGAGAGATAATATTAGTCTACTTTATTGTTATATTCTTCTTGGT
TTACTTTCGTTGAATTCTTTCAAGATACCGATTGGCATAAGAAGAAGCTT
TCTTTTTTGGGGGCTAAAGAAAACAAGATGATAATATAATAATTTTGTGT
TCTTATTTATTATTGTAAATAATATTCTTCACATTGAAAGTGAGGTAAAG
AAATAtcttaaaacaaacaaaag
Run BLAST on NCBI

transcript from alignment at sc0000007:60040..73205-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001090 ID=TCONS_00001090|Name=TCONS_00001090|organism=Clytia hemisphaerica|type=transcript|length=13166bp|location=Sequence derived from alignment at sc0000007:60040..73205- (Clytia hemisphaerica)
AATAATTTTTTGATATTTTAGAGATTGATATCCATGCGGAATGATGGACG CCAAAGGAATAACTCGTCAAGTTTAAGGTTGGTTGATTATCTTTGAAAAG TAGATTTGTCTGTGGTTCTTTAGAATCATTTTCTTTATGGATAATTCAAT AATATTTTAGCTACATGCGTGACTTGATTAGTATTCATCCGCCCCTTGAG AGCTTGTTATAAATGGATGAAAATGATAGTTAATCAAAAAATCACTATCA GACATTTTGAGTAGCAATTAGCAATTTGTGTTGAATGAAATGAGATGAGG GTCATTTAGTTCGGTAATTGCTAGTTATTCGCTTCCTATATTTGATTGGA AGTTGAGAAAAGAGATCTGTAATGTGTGTTTCTATGAAGTTTATTTCTAC TTGAGATATGATTTGGATGACTCTTTGTGAAAACGATGTATCATCATCAT GATCTTTGAGAAGGTTGTCGTAATATCAAAGTAGTGTTATCCTCTTCATT ACGTTTTATAGAGTTCATCTAATACTTATTAAGCGTATAATATATATTCA TTTCACAAAAAGCTGTAAGTCTTATCATTCATATCGCTTTCATTTTTTAT ATGTTGTATGAACAGTTAAGAGAGGGGTGTCGTATACTGAACTTTTTTGG TTTTCTTTCTTAGATGGTGATGCTTCTGCTTGCCATTTGGTTTTATGTAA GTTTTCGTTTCTTTTTCATTCTTCGCATTCTCAGAATATATTTTTGTAAT TCTTCAGGAAGTCTGGATTAGTTAAAATAAAATGTCTACGTGATGGTATT CTATAGTATGTCTCGAGACACGCCCTTTTATATAAGATCCTGACCCGTGA ATAGCTACTTATATTTTGGGCAACGGGTTGGTATGATATGTGCAGCGAAA AATAGTAAAACGATAATTGTTCCCGTTTCGTTGAACCAGGAAATTTAGAA CAAGGAAATTTAATGATCCATCACTTCTTGGAATGAATTACTGATTTTTT CGTTTCCTTCAGGGTATAACAGCAACAACGATACAGAATGAATTTTCATC CACTTTTACATCCATCGAACTTGCTTCGATTTCTCCATCCGCCAGTTCGA TGAAAACCAACACCCTAAATGAACCTTCCCGAACACCACCCACTCAAAGG TATAGCTCCTCAATGAACATCATTGCTGAAAGACTGGAAACAAGTAACCT ATCAATAGACATGACTGTACGAACTTTTATATCAACAACTAAATTGATAA TGGTACCTGACTTTTCTACAGACATGAACGTTAAAGAATCACCAACAACA TCTATAGACTTTTCAACATCACAACTCGTGACTGACTTACAAACTTCTAT ATCAAGTGATCGTCAAACAAACTCATCCACAGACCTTTCTATAACAGCAC TGGACATGTTGTCTTCTATGAAGACCTCACAATTTCAAACAGAGTTTTCC ACGCACTTTCTTGACAGCTCTTCGCCATTTTCTTCTTCATCTTCTCCCAT TGAAAAGTCTCTTTACTCTTCTTCGATTGCTTTGCCGTCCTCACTTTCAT CTTCCTACCTCTTATTTTCTACCTCTGTTAGTTCCCAGTTCTCTAGCTTT TCTTCAAGCATTTCTCCCAGTGTACCTTACAGTGTTTCTGCCAGCACCTC CTCGTCAACCATTATCAGATCAGCTGAAGTGGAACCTTCTTCAAACATCA TTTCAACTTTACGGGCTTTCTCCACTGTTGACAGAAGCTACTCGTCATAT GAAGCTTCTTCGCAACCATCAAACGTTGACAGTTTTTTAACATTACAAAC GACCAACTTTGACGCTTCTTCAATCTTACAACAATCAACAACATCAGAAA AGACAGCTTTAACGACTGAATCTGTGGTAACCTCTACCCTCCAGTTATCC TCCCAACCCTTCCATAGATCCTTTGATATTTTTTCAAGCTCCCTGGAGCA CACGTCAACTGTTGCTACAAATTATTTGGTGACGCCCAACAATCTCGCAA CATCGCAGTCAGACTCGCCAACATCCGCAAAAGCTATGACCACTGATTCA AAGAGTTCGTCTCCTAAGAACATTCAACCAAGCACATCTACGAGAGAAAT AGTCTCATTGACAACCTCCATTATATCCCTACCACCATCAAGAAAACCCT CCACTACTCAACAACCAACCACAACCACAACGCAACCACCTTTGCCAGCA TTTAAGCAAAATATTGATGATACCAGTATATTTGTTTTGCTACCTTTGTC TTATCCTGTCGACAGCTGGGAAGAGATCACTGTTTATGTCGTCATTCCTT CACTTGGTAAGTCACTAATTCTTTTTGTAAATTTTGAGATTTTTATTTCT TTTTGCCACATTTTCTTTCATGTATTCAATTTCGTAATTTCGTATTTAAG AAAAATTTAAGCATGCAAAAAAGTAGTATCTACGAAAATGTAAAAGGTAA CAGTCCTAGTGTCCCTACGGCTATAAAGATACATATTTTTATACAGGTTA CAAGTCAACGGGCTCATGGTACAGAATTTTCATCAAGAAAGAAAAACACG ACCGTTACCCTGCACTTGTCATGAAGCCCAAGCAACTTTCGAACGATCCA CGTCGAAAAAGAAGAAGTGCAGCCAAATTCTTGAACATCAAACTTGGCAT CAGTAAAGACTGTACTAAAGTCGATCAAGAGATTTGTAATGGTCCTCTAA CTCCCTCAACTAACTACAGGTTTTACTTAAGTCTGTTCCAAAAAACTCCG TACTTTACACATTGCTCTCACGGGAAAAAAATATAACTAAAAGTAATTAA TACCTTTTTGAAAAGATAATTTTAGCAGCTCGATGTGAGCTTTAAAGAAT TTTCTAAGGATTTGAAAATGAAGATGAAAAGTGAAAGAAAAAATGAAGAT TTTTCTACTCGGTAATATCTTTTCTGAAACAGCGCTGATTTCAAGTAAGT ATTCAGTTTTTCTTTTTGGTAAAGAGTTATAGCCTCTTGTCCATTTCGAT CGTTTCTAGCAATTTATGGCCTATTTTGACCTTTCTCGGAGGCTTGTGGT TTTCGATCGAAAAGTGATATAAAAGATCTTATAAAAAATCTTTCTAAGGA GGTATTACTTTTAGCTATATCTTTTCACTATATCTTTTCACCTAAAGAGG ACTTTTAGACCAAACTTTACAAGAAGTCTTTTTTTGTTGAGAAATATTGC GTAATAATTTCAAGACTACTCCCTCTCAGGTTTTCATTTATATTTTCGTC CAATGTATGAAAGACAACCCTCAAAGTTATATTTTCACTATTTTGAACCC ACATGAAGTGGTAAAAGAAGGGAGACACACCCATCCTGAAGATCTAATTC AATTTCACAATAAGTTGTTATTGACAAATAGAGACATGGGTATGATAAAT ATTCTCTTTGATCAAGTGCAGATGTTTTCGAAGATGTATTAAACTTCTAT TTTGTTCGTTTAGTATTCAGTTGGAAGTCTTCTTCACCAATGGAACATCT TTGACAACCCCCTCCTCAAAACCCTGGTCTACTTTACAAAAAGGTTGGTA ACTTTTTTTTTTATTTCCTCCTTTGCTAGTTTCTTCTCCAGTAATCTCGT ATTCAGATATTACCTTGTTTTGTGATTGAGCTCTCCGAGTAAATGTTTGT ACAACCCGGGACGAAGATATTATTTTTCCCTGTCAACTAATGCCGTTGTC TAGGGAGGCGGTGACTTGTTTCGTGGGAGGTTTATCACTTACAAATCTGT GTTTTGGAAGAACCAAAACAATGTACGCAAGGTTTGATATGAAGGCCTGC TCAAGATCAATAATGAACGGCTTTATGAAACTATTTTGTTAATATCACGA GAAGCCTTCAGTTAATTTTTGATTTTGATTTGATTTTTTTTANATGGCCA GTTCATTTTTTTTATTTCGATTCTTGAGGAGTGTGTTCTATAAAATTTGA TTTTTTTCTTCCAGCGGTGATCGTGCCACAAGAAGGTGTTCGTTCATCTG TCGTCATCATCATCCTCACCGTCCTTCTCGTCTTCTTCATCTTTCTCACC ATCATCATCACAATCATCGTCTGCCGTAAGAAACGATCACGAAAATATCT CAGGTATGTATCTTACGTGTTTCAACCTCTTTTCGTCATTTTTTTTTAGG CCCCTCCCAAGTGTTACCAACTATTCTTCGTTAATATTTTTTTAATGAAT TATGAATTTTATGAGACAGTCCTTGAAACAATCGGTGTTCTTCACTGATC TGAAAGAAAAAAGCTTCCATTAGAGTATAGCAAAAAAAGGTCCTCCGATC CTTCCTACGAGCAGTTCATTTTGTACTACAACCAGGAAATGGACTATATC CAGAATAATTTGAATTAAACAGGGAAATTATATAACAATTAATGGACATC CTCTCCAAGGGTAGCAGTGCTTTTGCAGCTTGCCGTTACTATATTCAATT TATAGACATACAGCTAACTGTGGTATTTTGTAGCAGGTTCTCTCTTTGAA ATGTAGATTTTATATAAATTAAATGTTTATATGTCACTTCAATAAACCTT CTATCATTTGCAAAGCTATGTTTCTTGGCGTCAGTTTGTTTGCGATTTCT TAAAACGATCGATTAACCTCTATGTCCGTCTTTCATAAGTATGTTGCGAT TGATGTTGGATGGAAGCAGGCACTTTGCATCTTTTTGTGACGGTCGGATG AATTAAACGCTTTCACGGGCTGAGAAACTCTCATTGTGACGTTCACAGAG AGTGTCAAATAGGTTAAGCCTCGTCATTTGGCACAATGTCCCATCAAAAA GTTTTGATTGATTTTGCAGACGAAATTCTCCAATAAATAGCGCATGCTGG TTATGTTTTCCATCATTTTCTTTTTAAAATATTGGATTCTGATTGCTTAA TCTCATCAAAAAGACTTCATATGGCGCTCTCTTTCCGAAAGAGAAGAAGA GGTTGAAGAAGAAGAGTTTGCTCTTTCAAAACTCCGTCCTCGCTCCTTTA TAACCATTTCCAACTATTGCTTTTGAAATAATTAAGGAGTTTTTAAAGAG TTGTATAATGGAAAAAGAAGGGCTTAAAAAGCTGAAACGAATAGTTTACG ACTAGTTGCTTTTATTTCTGCTGATTGAGAAGTAAAGAAGTCATTTTCTG GGTGAAACATGAAAGGTTGTTTAGGCTAGGCTCTTAATTCGAATATAGAT TTATGGAAACTGGAATTCCTTTCTTTCTCAAAACGGAAATGAAATTAGCA TTTGTTGATGATTTGTGTTTTCGATTAACTGGATTGGATTGATTGGATGA AACCATAAATTTGATGATATAAAACATTAACGACGATTACGTAACTCCTT TTCGCAGCTTTAATTGCATCCGGCGTTTGATTTTAGCACAGTGACAAATT TTATGTAGTGTGCAATATATTGGTTGGTATTATCAGTACATTTGATAAGC TGCTTCTGCTCATTAACCACCTTCAAACAATTATTCTTCCTTATTCTCTT CGTTTCGTCATTTTCCTGTTTTCGACAAAACACGTGTTTATTTTCGACCA TATTATTGCGAGGATGTTTTCGCGTGAAGCGGTGAAGAAGAAGGAGGATC AAGGGAAGATGTCCTCTGCACTTGCATTTTTTGTAGACGGGATATGTCCT TTTCATCACTTGTACTCGGTATCTTGAATTTTGCGAATGCTTTTCAAATA CTTTTTAGAGTAATTTTTAAAGGGAGATAAAATATGCTTTTGCTGTAAAA TCGGGTTTTGTTTTGTTGTTGCCTTGACAACAATCATTCCATCAAAATGG CTACGGCTTATCCCCCTTCCTGGTGCAAAAAAGCGGCGCCAATAATCCCT CTTCTATCTCTATTTAATTAATCCAACATTTTCATTACTTTTTCAAAAGA AGACTTAATTTGTCTTTTCCTTCTCACTCTTTTAATTTGTTATTTCGGGA GATGGATATTATATGTTCTTCCTTTGCAAGCTTCAAAACATCAGCACATG ATATTGCTGCTAATGTCTTTGTTTCGCACCGGCGTAGGAAACTTACTTTT GATCAATTAAGAAAGACAATAGAATGTAAGAATTGATCTCTTAATGGCTT TGCGTCTCATCAGCCAAAATATTACTTCACTAATTGTCTAATCTTTATCA CTTGATGATTTCAACTGGCTTGTGTGTTCTTTAATAGATGTCCTTATGGA AGTTGTTTGCGGAGAGTCAACGGAGTTAGAAGTACTTTAGTAAAGTCAAT GTTTACACATTATGTAATGTGGCGAGAACGTCCTTCTTTAATTTTAGCGA ATGATATCATGGGAATTTGCGACCGTTATTTTTTTGTGTGTTTTTGTGAT GAGTTGTACATCATTTTTGGTCTTTCGTGTTTAAGCGTCACTGAGGGGTA ATGAAAGTTCACTTTCAGATCTTTTGATACAGAAGGGGGGAACATTCTGG TTGGGCGTTTGATTGTTTTGTTTGAGACATGGATTAAATGGGAATGGAAG GGAATTCAGCTGCTTCGTTGAGTTTTCACGTTTACACATCATCATAGAGA GACACATGCACCTTCTCATTTCATTTTCAACCTCAAAGAAAAGAAAACAG AAAGAAAGGGAATATTTCTCAATAATTATTTCTTCTCCAACATCTTCATA TATTACATCGTATTCATTTTTTCCAAAACATGTGTCTGTTTGTCTTCTCT ATTTTTCTTCTTTCTTTCTTCTTCTTTCCATTTCTCGACTTGAACACTCT TCCCTCTCATCACAACGTTCAAGTGAAAGAGTGATCTGTTTCTTTCTCGA CTGAACAGCACAGCAAGACTNTGAACACTCTTCCCTCTCATCACAACACA ACGTTCAAGTGAAAGAGTGATCTGTTTCTTTCTCGACTGAACAACACAGC AAGACTCTCACGATGTGTTCCGAAGCACCCTCAAACTACCGAAGACGTCG TTTTCAAATGTGCTTCTGCTTAGTGTAAGTCTTTACTTCCCTTTTCAACC TTTTTTTCCTTTCTTTCTGTTTTCATGCAGGGCTTTAGAGGTGGTGAATT TCCTCTGTTTTCATCGCGGAAATCTAGTTTCTTTTTCTGATTTTGAACAC CCAAAAGATAATGGAGGAAGGGTGATTTCCACCATCGGTACTTTCCGACT GATGTTGTTGTGTGGGCTTCTCTTGAGTTCAGTGGGTAGTTCATCCTATG GAAAGCAATAGGAACAAAATACAACAAGTCAATGATAGAAATTTTAATTG ACTTATTCACATGGTTAGGTGAACTTTCTTTTTGTGATGAGTACTTTTAT AAAAAGAGAAAGTCGAAGCTTTATTAAACTGTCTTGATCCTGTATTATAA TGTTTATTTTGAACATGAGACAAAGAGAAGTGTATGAATCATGCGAGAAG TTAGTGACATCTCTTCAATTATAAATAACATTCTTACTTCAAAGCATTCA CACCACACTTCTATCGAAATTCATACACTGTATTTAAAACAAGTTGAATG TTGCATTCTGTAACTTCGCAATGAAGAAGAAAATTTGCTGTTGATTTTCC TTTTATGGTGTTTGTATGTGTTGAATGATTGGTTTCTGCTTTGACGTGCT TCCATCTCTGACTGAGAATCAATGTCTCATTTCATTCAAATGACATACTT TGCACTCACACAAGTCTTCTAACTGCTTTTACTGTGTATTATATTTATTA GTTGCAAAAAATTAAAAACAAAGGGATCATTTTTGAAGATATGCGGATGT ACGACTTGGTGGACGAGAACAATGTGTTGTTTGACAAGCAAACCATCAAA CGACACAATAGTCGTGAACTGAACAACAATGAACCCGCTCTTCTCCGAAG AACTGTTTCTTTTTCCAACACCATAAGGTGTAAATGTTCAAAACTCTTAA CTTTAACACCCCATCTTCACCGTAGAGGGCAGCAAGACAAGGACAGTATG GGTGTGTCCCTCATGTCCACCAACTATCAGAGGAATGGGGCGAGCAGGTT GAAGAAGAAATTCTCAGGACCAGATATTCTCACTGAGCGACGAAAAAGTC TGAAAGGAATGACGAGGTAAGTGTTTTCTCTTTTTTCTAATTTTTAGATC ATGGCCGTTTGTTTATTTTTTCGAGTTTGAGCGAAACTGTTTTGTCTGAA CGAGATATGTCACACTCTGAAGGGTTTCCGTCAATAGTCAATAGACTGAC GGGTTTTCGGGACTTTTAAAATAATGATATTTTCCAAACAATCAGCCTGC ATTAACTATATATGATGATGTCATCATTAGGTAATGTTAAAATGCATAAT TTATTACCGACGGCCCGAACTGAGTGATAGGAAGATAATAAACGCAATAA CAAATATAGAAATCGTTTTATCTTTACATCGAACATGCAATTTCACAAAC ATTCTTCTGATAAGAGAGGTAGCAAGCCATGTTTCAAGATAAGGCCTTTT GTTTCGCATTTTTAATAAGCATTTGAACACCCCTCGACGTGATGTATCGC TTGATTAATGATACCGTTGTAAATATAAAAGCCTGTCAAAGTGTCATTCT TCATAATATGTTGTTTTCATAATGTATTTTCGTTTGTTTGTCAGACCTGT CTTCATCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGCATCGGATAGTA CCTTTCGTTTTGCCGAAGAATTTGAGGTATGATGTTACCCTTTCACCACC ACTTTCACAAGTTTGTGTCAAAAATGACAAACGTGAACTTTTGGAAATTA ACCTTTACTTATATCTTCCCTTTCATTAATATTTGTAATAACCAAACAAG TTGACCATTTACACGCCATAATTTCTGTACAACATTTTTTTGGATGTTAT TCAAAATGGGACGGAACGTCTAATTAATGATCATTAAGTCTTTTTAAGCC ATCCTTAATATTACACAATTTCTTCTAATTATAACTTTCTTAATGTTTAT CTTTCAGTCTATACGGGATGTCGGGAANATGTTTCAATCTTTAAAGCATT AAAAGCTTTATAAATCTTTAAAGCATTAAAAGCTTTATAAGTGCATGTCA TGACCTTTCAGTGGGGGCATTTAGTGAAAGCTATGACTAGTTTAGATTTT AGATCATGGCCGTTTGTTTATTTTTTCGAGTTTGAGCGAAACTGTTTTGT CTGAACGAGATATGTCACATTCATTCTGAAGGGTTTCCGTCAATAGTCAA TAGACTGACGGGTTTGCGGGACTTTTAAAATAATGATATTTTCCAAACAA TCAGCCTGTATTAACTATATATGATGATGTCATCATTAGGTAATGTTAAA ATGCATAATTTATTACCGACGGCCCGAAACTGAGTGATAGGAAGATAATA AACGCAATAACAAATATAGGCATCGTTTTATCTTTACATCGAACATGCAA TTTCACAAACATTCTTCTGATAAGAGAGGTAGCAAGCCATGTTTCAAGAT AAGGCCTTTTGTTTCGCATTTTTAATAAGCATTTGAACACCCCTCGACGT GTGTATCGCTTGATTAATGATACCGTTGTAAATATAAAAGCCTGTCAAAG TGTCATTCTTCATATGCTCTTATTTTCATAATGTATTTTCGTTTGTTTGT CAGACCTGTCTTCATCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGCAT CGGATAGTACCTTTCGTTTTGCCGAAGAATTTGAGGTATGATGTTACCCT TTCACCACCACTTTCACAAGTTTGTGTCAAAAATGACAAACGTGAACTTT TGGAAATTAACCTTTACTTATATCTTCCCTTTCATTAATATTTGTAATAA CCAAACAAGTTGACCATTTACACGCCATAATTTCTGTACAACATTTTTTT GGATGTTATTCAAAATGGGACGGAACGTCTAATTAATGATCATTAAGTCT TTTTAAGCCATCCTTAATATTACACAATTTCTTCTAATTATAACTTTCTT AATGTTTATCTTTCAGTCTATACGGGATGTCGGGAAATTTGAGAGGCATG AAGTTGCTGACATGGCAGAAAATAACGGCAAAAACCGATACGTCAACGTC TTACCATGTAAGTCAAGTTTCGTTTTAGGAAAATTTTTGGCTCTGAATTG AATTTATGATTCTTTCCTTAAAGAGAGATTTTTAGAAATGTAGAAATTTT TTCTTGGTATTTCCTGTGATGTGACCACCATGCAGTCTTTATAGAATTTC TCCTTATTAATCATCTGTATTTTGGTTTACCAGACGATTATACGCGAGTG AAACTATCGAGTATAGACGACGAACCTGGTTCGGACTATATCAACGCTAA TTATATTCACGTGAGTTGTTGTGCATTCATCAATTTTAGCTTTTTGGATT ATTATTTTTTCAAGATAATTTTTTAACTTGCCATACCGGATCTGTTTTAC AGCGGAAACAAATCAGACTTTAATACGGTTAGAATTTCGTCTTTGTAGGG TTACAAGCAACCACGAGCATACATAGCCACACAAGGACCCCTCCCAAGTA CCACAGACCACTTCTGGCAGATGGTCTGGGAACAAAAATCTCGAATCATT GTCATGGTTACGCAATGCAATGAGAAGAATCGTGTAAAATGTCATCAATA TTGGCCTGCATCAGGTTCGACGCGATACGGAGAAATCGAAGTAACGCTTA AGCACGAAACAATATATCCAGAATGGACCGAACGGGAATTTCTAATGACA TTCGAGGTGAGGAAAACTTCCCACGTTTTCTTGAACAGTTGATATTGGGT TGTCTGGTTCTCACTCTTTTAACGACGTTTATGGAGAAATATTCGTCTCC TATTAATAACATGAATAAAAACAATATCTTTTATTATTTTAAAGGGCGAA TCTCGATTACTCAGACATTTTCAATACACAGCATGGCCTGACCACGGCGT ACCTCGCTCATCTAAAGAAATGTTACAGTTCGTGACGACCGTTCGGTTTC ATCAACGGCCCGATGACGGCCCTGTCATCTGTCATTGCTCGTAAGTTCTC TCCTCTTCACTTGCAGTAAATGACGTCATTTGTTTTCTTTCGGTTTTTAG AACAGCTCGGTAACGTAAAGGGTGAAGGGGTTGTATTTTTAGATTGGGAA ATTAAACTTATTAAAAGAAGTTCTTAAAAATTTATCTTGTTCGTGCCTCC TTAACTTTTCATGCCAACCTATCTTAATTCGGAGCAATTTTCCTTAATGA TAATTTCCTACACTTTTCTTGAATAGTTTCCTCATTAAATTTAATCAGAA AATTCATGACAATCGGTTAAACCAGCTTAACGCAACCCATTAGATAAATT GCACAATTTCGTGGTGGTGAATAACCAAGGGTAGCCATTCTTTCACACAA CCAATATTTACTGCGACGCTGTTAAACGCTTTTTTTCGTAATTTCTACAC ACACCAAACCTCAAAAAACCCCTGACATACTTAACTTTATACTAGTTCTT TTACGGTCTGTAAGTGTTCAAAATCTCATTAATCAAGCCTTGTTGTAAAC GATTGTAGGGACATAAGATGCCATAACTTACTGCATCCTGTTATGACATA ATATTAAGTAACAATTAATTATTTTGTTTGTGTTTTAGGGCGGGAGTTGG GCGCACAGGAACTTACTTGTGTGTTGATATTCTGGTCAATAAACTACAGA CCGAAAACAATGTAGATGTTTATGGTGTAGTGTGTTTAATGAGGACTCAA CGATGCTCCATGGTGCAGACTGAGGTAATGAAATACAGACCACATTTTTA AGCATCTTCAAAACCTAATCTTTATTCAACATTTTTACAAACCTACTGTT TTCTAGAATTGTACTCTATACTAAAATATAGGATTGCTTTTACTTTCAGG ACCAATACATCTTCATTCACCGAGTCATATTGGACTATTTGAAACAACGT GACGAAAAGCAACAAATCTTTTCCGGATATTCGACCTTAGAAATGCGAAG GAAAAGTAAAAGTGAATCCAATCCTGTCGAACCTGCGGCTGAAGGTACGT TTCAAGTTTGTTTTGATAAGTAATCCTCAAGAACTGTCTTCTCAGAACGC AAAAACCGTAGATCAAGAATAAACATAACGAATTCGAGAAAGAAACAAAT CGTTTTTTGTTGGAACTTGATCAGACTTGTTTCATAATTCTGTCTTCTCA GAATGTAAAAACCATAGACCTCATCAGATTTGATATAAAAAAATCAATCA ACAAATAAACAATTTTCTAAGAAATCATAACGAACTCGTGAAAGAAACAA ATCATTTTTGTTGGCACTTGATCAAATTTGTTTCATAATCTGTATGTTAT CATATACAATCAGGTTTTTTACTCAATTAAGTTCGCATTACAGATCGTCT GATCTTTCGGTGAATTACCGTGACGTCATAATAGATCACGCTGGTCTTTG ATGGGAATCAGTATTAGGAAATCGCAGTTTACAAATTTATCAAGAAATTA AGAAAAGCAATTCGATTATAAAATCTGTGATATCTTATCCCCCTGATTTC TCCATATAAATGCAACATTGTTTGGTGAGAATTCAGCCTTTGTTCATCCC TTAATTATTTTTTCTCTCATCTTCAGCATTATTGAAAGAAGAAGAAAAAG AAGACGAGGAAGATGAAAATCTGGATAATGATGATGATGAAACGAAATCT GACGATTTTCTTTCCGAAGAATTCGAGAACAGCGATTTAGAAACACCTCC TGTATAATACGCATACTACCTCTTCATATTTGTAGACTTTTTTTTGACTT TATGTTGTGTAGAAAGAAAATGGATGCCCTTTTATCGGGTAGGATTTCAT CTTAACAAGTGATGATCAAATATCACTCACCATGCATCTCCCTCATACTT CGTTCTTTAAAACATTTTTATTGTAATTTCTTTTTAAATGGAAATTGTAA ATAGGTACACTAGAAATTTAATTTTTATTTTGAAATTTTATATAAATAGC GAGAGATAATATTAGTCTACTTTATTGTTATATTCTTCTTGGTTTACTTT CGTTGAATTCTTTCAAGATACCGATTGGCATAAGAAGAAGCTTTCTTTTT TGGGGGCTAAAGAAAACAAGATGATAATATAATAATTTTGTGTTCTTATT TATTATTGTAAATAATATTCTTCACATTGAAAGTGAGGTAAAGAAATATC TTAAAACAAACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000611XLOC_000611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001090-exon-sc0000007-1575043694:73129..73205TCONS_00001090-exon-sc0000007-1575043694:73129..73205Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:72510..72542TCONS_00001090-exon-sc0000007-1575043694:72510..72542Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:72057..72193TCONS_00001090-exon-sc0000007-1575043694:72057..72193Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:70900..71267TCONS_00001090-exon-sc0000007-1575043694:70900..71267Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:70487..70709TCONS_00001090-exon-sc0000007-1575043694:70487..70709Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:69663..69742TCONS_00001090-exon-sc0000007-1575043694:69663..69742Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:69103..69241TCONS_00001090-exon-sc0000007-1575043694:69103..69241Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:65140..65280TCONS_00001090-exon-sc0000007-1575043694:65140..65280Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:63521..63602TCONS_00001090-exon-sc0000007-1575043694:63521..63602Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:63149..63239TCONS_00001090-exon-sc0000007-1575043694:63149..63239Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:62896..62972TCONS_00001090-exon-sc0000007-1575043694:62896..62972Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:62500..62757TCONS_00001090-exon-sc0000007-1575043694:62500..62757Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:62216..62361TCONS_00001090-exon-sc0000007-1575043694:62216..62361Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:61482..61617TCONS_00001090-exon-sc0000007-1575043694:61482..61617Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:61212..61356TCONS_00001090-exon-sc0000007-1575043694:61212..61356Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1575043694:60040..60629TCONS_00001090-exon-sc0000007-1575043694:60040..60629Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:73129..73205TCONS_00001090-exon-sc0000007-1510915933:73129..73205Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:72510..72542TCONS_00001090-exon-sc0000007-1510915933:72510..72542Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:72057..72193TCONS_00001090-exon-sc0000007-1510915933:72057..72193Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:70900..71267TCONS_00001090-exon-sc0000007-1510915933:70900..71267Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:70487..70709TCONS_00001090-exon-sc0000007-1510915933:70487..70709Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:69663..69742TCONS_00001090-exon-sc0000007-1510915933:69663..69742Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:69103..69241TCONS_00001090-exon-sc0000007-1510915933:69103..69241Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:65140..65280TCONS_00001090-exon-sc0000007-1510915933:65140..65280Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:63521..63602TCONS_00001090-exon-sc0000007-1510915933:63521..63602Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:63149..63239TCONS_00001090-exon-sc0000007-1510915933:63149..63239Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:62896..62972TCONS_00001090-exon-sc0000007-1510915933:62896..62972Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:62500..62757TCONS_00001090-exon-sc0000007-1510915933:62500..62757Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:62216..62361TCONS_00001090-exon-sc0000007-1510915933:62216..62361Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:61482..61617TCONS_00001090-exon-sc0000007-1510915933:61482..61617Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:61212..61356TCONS_00001090-exon-sc0000007-1510915933:61212..61356Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1510915933:60040..60629TCONS_00001090-exon-sc0000007-1510915933:60040..60629Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:73129..73205TCONS_00001090-exon-sc0000007-1491911889:73129..73205Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:72510..72542TCONS_00001090-exon-sc0000007-1491911889:72510..72542Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:72057..72193TCONS_00001090-exon-sc0000007-1491911889:72057..72193Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:70900..71267TCONS_00001090-exon-sc0000007-1491911889:70900..71267Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:70487..70709TCONS_00001090-exon-sc0000007-1491911889:70487..70709Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:69663..69742TCONS_00001090-exon-sc0000007-1491911889:69663..69742Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:69103..69241TCONS_00001090-exon-sc0000007-1491911889:69103..69241Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:65140..65280TCONS_00001090-exon-sc0000007-1491911889:65140..65280Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:63521..63602TCONS_00001090-exon-sc0000007-1491911889:63521..63602Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:63149..63239TCONS_00001090-exon-sc0000007-1491911889:63149..63239Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:62896..62972TCONS_00001090-exon-sc0000007-1491911889:62896..62972Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:62500..62757TCONS_00001090-exon-sc0000007-1491911889:62500..62757Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:62216..62361TCONS_00001090-exon-sc0000007-1491911889:62216..62361Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:61482..61617TCONS_00001090-exon-sc0000007-1491911889:61482..61617Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:61212..61356TCONS_00001090-exon-sc0000007-1491911889:61212..61356Clytia hemisphaericaexon
TCONS_00001090-exon-sc0000007-1491911889:60040..60629TCONS_00001090-exon-sc0000007-1491911889:60040..60629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:60040..73205 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.174391 0.14839 1.10889 0.0692863 0.0291383 1.05519 0.029478 0.0157643 6.97158 0.171497 0.836902 0.50717 0.665974 1.55986 1.10303 3.66847 1.17815 2.01547 1.09784 1.14366 2.67676 4.41089 0.360251 0.370738 1.83043 5.00167 7.87658 0.0020704 0.34373 0.401542
Blast
BLAST of TCONS_00001090 vs. Swiss-Prot (Human)
Match: PTPRB (Receptor-type tyrosine-protein phosphatase beta OS=Homo sapiens GN=PTPRB PE=1 SV=3)

HSP 1 Score: 315.079 bits (806), Expect = 1.425e-89
Identity = 182/456 (39.91%), Postives = 261/456 (57.24%), Query Frame = 3
Query:  735 SAAKFLNIKLG-----ISKDCTKVDQEICNGPLTPSTNYSIQLEVF----------FTNGTSLTTPSSKPWSTLQKAVIVPQEGVRSSXXXXXXXXXXXXXXXXXXXXXXXXCRKKRSRKYLRGQQDKDSMGVSLMSTNYQRNGASRLKKKFSGPDILTERRKSLKGMTRPVFIRDFRAWVERSASDSTFRFAEEFESIRDVGKFERHEVADMAENNGKNRYVNVLPYDYTRVKLSSIDDEPGSDYINANYIHGYKQPRAYIATQGPLPSTTDHFWQMVWEQKSRIIVMVTQCNEKNRVKCHQYWPAS-GSTRYGEIEVTLKHETIYPEWTEREFLMTFEGE---SRLLRHFQYTAWPDHGVPRSSKEMLQFVTTVR--FHQRPDDGPVICHCSAGVGRTGTYLCVDILVNKLQTENNVDVYGVVCLMRTQRCSMVQTEDQYIFIHRVILDYLKQR 2039
            S +K  NIKLG     +   C    Q+ C+GPL P T Y I +  F          FT      T  S P +T  + +    EGV + + +I + V +V  +          CR+K S       +++ S  +S+           R  +  S    L   +K  +  + P+ I  F     +  +DS +  ++E+E ++DVG+ +  ++A + EN GKNRY N+LPYD TRVKLS++DD+P SDYINA+YI G    R YI TQGPLP T D FW+MVWEQ    IVMVTQC EK RVKC  YWPA   S  YG++ + +  E++ PEWT REF +  E +    RL+RHF YT WPDHGVP +++ ++QFV TVR   ++ P  GP + HCSAGVGRTGT++ +D ++ +L ++++VD+YG V  +R  R  MVQTE QY+++H+ + D L+ R
Sbjct: 1539 SNSKSFNIKLGAEMESLGGKCDPTQQKFCDGPLKPHTAYRISIRAFTQLFDEDLKEFTKPLYSDTFFSLPITTESEPLFGAIEGVSAGLFLIGMLVAVVALLI---------CRQKVSHG-----RERPSARLSI-----------RRDRPLSVH--LNLGQKGNRKTSCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRAR 1967          
The following BLAST results are available for this feature:
BLAST of TCONS_00001090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTPRB1.425e-8939.91Receptor-type tyrosine-protein phosphatase beta OS... [more]
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