Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

TCONS_00001089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001089
Unique NameTCONS_00001089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001089 ID=TCONS_00001089|Name=TCONS_00001089|organism=Clytia hemisphaerica|type=transcript|length=3507bp
ttttttgatattttagagATTGATATCCATGCGGAATGATGGACGCCAAA
GGAATAACTCGTCAAGTTTAAGATGGTGATGCTTCTGCTTGCCATTTGGT
TTTATGGTATAACAGCAACAACGATACAGAATGAATTTTCATCCACTTTT
ACATCCATCGAACTTGCTTCGATTTCTCCATCCGCCAGTTCGATGAAAAC
CAACACCCTAAATGAACCTTCCCGAACACCACCCACTCAAAGGTATAGCT
CCTCAATGAACATCATTGCTGAAAGACTGGAAACAAGTAACCTATCAATA
GACATGACTGTACGAACTTTTATATCAACAACTAAATTGATAATGGTACC
TGACTTTTCTACAGACATGAACGTTAAAGAATCACCAACAACATCTATAG
ACTTTTCAACATCACAACTCGTGACTGACTTACAAACTTCTATATCAAGT
GATCGTCAAACAAACTCATCCACAGACCTTTCTATAACAGCACTGGACAT
GTTGTCTTCTATGAAGACCTCACAATTTCAAACAGAGTTTTCCACGCACT
TTCTTGACAGCTCTTcgccattttcttcttcatcttctccCATTGAAAAG
TCTCTTTACTCTTCTTCGATTGCTTTGCCGTCCTCACTTTCATCTTCCTA
CCTCTTATTTTCTACCTCTGTTAGTTCCCAGTTCTCTAGCTTTTCTTCAA
GCATTTCTCCCAGTGTACCTTACAGTGTTTCTGCCAGCACCTCCTCGTCA
ACCATTATCAGATCAGCTGAAGTGGAACCTTCTTCAAACATCATTTCAAC
TTTACGGGCTTTCTCCACTGTTGACAGAAGCTACTCGTCATATGAAGCTT
CTTCGCAACCATCAAACGTTGACAGTTTTTTAACATTACAAACGACCAAC
TTTGACGCTTCTTCAATCTTACAACAATCAACAACATCAGAAAAGACAGC
TTTAACGACTGAATCTGTGGTAACCTCTACCCTCCAGTTATCCTCCCAAC
CCTTCCATAGAtcctttgatattttttcaagctCCCTGGAGCACACGTCA
ACTGTTGCTACAAATTATTTGGTGACGCCCAACAATCTCGCAACATCGCA
GTCAGACTCGCCAACATCCGCAAAAGCTATGACCACTGATTCAAAGAGTT
CGTCTCCTAAGAACATTCAACCAAGCACATCTACGAGAGAAATAGTCTCA
TTGACAACCTCCATTATATCCCTACCACCATCAAGAAAACCCTCCACTAC
TCAACAACCAACCACAACCACAACGCAACCACCTTTGCCAGCATTTAAGC
AAAATATTGATGATACCAGTATATTTGTTTTGCTACCTTTGTCTTATCCT
GTCGACAGCTGGGAAGAGATCACTGTTTATGTCGTCATTCCTTCACTTGG
TTACAAGTCAACGGGCTCATGGTACAGAATTTTcatcaagaaagaaaaac
acgACCGTTACCCTGCACTTGTCATGAAGCCCAAGCAACTTTCGAACGAT
CCACGTCGAAAAAGAAGAAGTGCAGCCAAATTCTTGAACATCAAACTTGG
CATCAGTAAAGACTGTACTAAAGTCGATCAAGAGATTTGTAATGGTCCTC
TAACTCCCTCAACTAACTACAGTATTCAGTTGGAAGTCTTCTTCACCAAT
GGAACATCTTTGACAACCCCCTCCTCAAAACCCTGGTCTACTTTACAAAA
AGcGGTGATCGTGCCACAAGAAGGTGTTCGTTCATCTGTCGTCATCATCA
TCCTCACCGTCCTTCTCGTCTTCTTCATCTTTCTCACCATCATCATCACA
ATCATCGTCTGCCGTAAGAAACGATCACGAAAATATCTCAGAGGGCAGCA
AGACAAGGACAGTATGGGTGTGTCCCTCATGTCCACCAACTATCAGAGGA
ATGGGGCGAGCAGGTTGAAGAAGAAATTCTCAGGACCAGATATTCTCACT
GAGcgacgaaaaagtctgaaaggAATGACGAGACCTGTCTTCATCCGAGA
TTTTCGTGCATGGGTTGAAAGAAGTGCATCGGATAGTACCTTTCGTTTTG
CCGAAGAATTTGAGTCTATACGGGATGTCGGGAAATTTGAGAGGCATGAA
GTTGCTGACATGGCAGAAAATAACGGCAAAAACCGATACGTCAACGTCTT
ACCATACGATTATACGCGAGTGAAACTATCGAGTATAGACGACGAACCTG
GTTCGGACTATATCAACGCTAATTATATTCACGGTTACAAGCAACCACGA
GCATACATAGCCACACAAGGACCCCTCCCAAGTACCACAGACCACTTCTG
GCAGATGGTCTGGGAACAAAAATCTCGAATCATTGTCATGGTTACGCAAT
GCAATGAGAAGAATCGTGTAAAATGTCATCAATATTGGCCTGCATCAGGT
TCGACGCGATACGGAGAAATCGAAGTAACGCTTAAGCACGAAACAATATA
TCCAGAATGGACCGAACGGGAATTTCTAATGACATTCGAGggCGAATCTC
GATTACTCAGACATTTTCAATACACAGCATGGCCTGACCACGGCGTACCT
CGCTCATCTAAAGAAATGTTACAGTTCGTGACGACCGTTCGGTTTCATCA
ACGGCCCGATGACGGCCCTGTCATCTGTCATTGCTCgGCGGGAGTTGGGC
GCACAGGAACTTACTTGTGTGTTGATATTCTGGTCAATAAACTACAGACC
GAAAACAATGTAGATGTTTATGGTGTAGTGTGTTTAATGAGGACTCAACG
ATGCTCCATGGTGCAGACTGAGGACCAATACATCTTCATTCACCGAGTCA
TATTGGACTATTTGAAACAACGTGACGAAAAGCAACAAATCTTTTCCGGA
TATTCGACCTTAGAAATGCGAAGGAAAAGTAAAAGTGAATCCAATCCTGT
CGAACCTGCGGCTGAAGCATTattgaaagaagaagaaaaagaagacgaGG
AAGATGAAAATCTggataatgatgatgatgaaacgAAATCTGACGATTTT
CTTTCCGAAGAATTCGAGAACAGCGATTTAGAAACACCTCCTGTATAATA
CGCATACTACCTCTTCATATTTgtagacttttttttgactttatgtTGTG
TAGAAAGAAAATGGATGCCCTTTTATCGGGTAGGATTTCATCTTAACAAG
TGATGATCAAATATCACTCACCATGCATCTCCCTCATACTTCGttcttta
aaacatttttattgtaatttctttttaaatggaAATTGTAAATAGGTACa
ctagaaatttaatttttattttgaaattttatataaaTAGCGAGAGATAA
TATTAGTCTACTTTATTGTTATATTCTTCTTGGTTTACTTTCGTTGAATT
CTTTCAAGATACCGATTGGCATAAGAAGAAGCTTTCTTTTTTGGGGGCTA
AAGAAAACAAGATGATAATATAATAATTTTGTGTTCTTATTTATTATTGT
AAATAATATTCTTCACATTGAAAGTGAGGTAAAGAAATAtcttaaaacaa
acaaaag
Run BLAST on NCBI

transcript from alignment at sc0000007:60040..73200-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001089 ID=TCONS_00001089|Name=TCONS_00001089|organism=Clytia hemisphaerica|type=transcript|length=13161bp|location=Sequence derived from alignment at sc0000007:60040..73200- (Clytia hemisphaerica)
TTTTTTGATATTTTAGAGATTGATATCCATGCGGAATGATGGACGCCAAA GGAATAACTCGTCAAGTTTAAGGTTGGTTGATTATCTTTGAAAAGTAGAT TTGTCTGTGGTTCTTTAGAATCATTTTCTTTATGGATAATTCAATAATAT TTTAGCTACATGCGTGACTTGATTAGTATTCATCCGCCCCTTGAGAGCTT GTTATAAATGGATGAAAATGATAGTTAATCAAAAAATCACTATCAGACAT TTTGAGTAGCAATTAGCAATTTGTGTTGAATGAAATGAGATGAGGGTCAT TTAGTTCGGTAATTGCTAGTTATTCGCTTCCTATATTTGATTGGAAGTTG AGAAAAGAGATCTGTAATGTGTGTTTCTATGAAGTTTATTTCTACTTGAG ATATGATTTGGATGACTCTTTGTGAAAACGATGTATCATCATCATGATCT TTGAGAAGGTTGTCGTAATATCAAAGTAGTGTTATCCTCTTCATTACGTT TTATAGAGTTCATCTAATACTTATTAAGCGTATAATATATATTCATTTCA CAAAAAGCTGTAAGTCTTATCATTCATATCGCTTTCATTTTTTATATGTT GTATGAACAGTTAAGAGAGGGGTGTCGTATACTGAACTTTTTTGGTTTTC TTTCTTAGATGGTGATGCTTCTGCTTGCCATTTGGTTTTATGTAAGTTTT CGTTTCTTTTTCATTCTTCGCATTCTCAGAATATATTTTTGTAATTCTTC AGGAAGTCTGGATTAGTTAAAATAAAATGTCTACGTGATGGTATTCTATA GTATGTCTCGAGACACGCCCTTTTATATAAGATCCTGACCCGTGAATAGC TACTTATATTTTGGGCAACGGGTTGGTATGATATGTGCAGCGAAAAATAG TAAAACGATAATTGTTCCCGTTTCGTTGAACCAGGAAATTTAGAACAAGG AAATTTAATGATCCATCACTTCTTGGAATGAATTACTGATTTTTTCGTTT CCTTCAGGGTATAACAGCAACAACGATACAGAATGAATTTTCATCCACTT TTACATCCATCGAACTTGCTTCGATTTCTCCATCCGCCAGTTCGATGAAA ACCAACACCCTAAATGAACCTTCCCGAACACCACCCACTCAAAGGTATAG CTCCTCAATGAACATCATTGCTGAAAGACTGGAAACAAGTAACCTATCAA TAGACATGACTGTACGAACTTTTATATCAACAACTAAATTGATAATGGTA CCTGACTTTTCTACAGACATGAACGTTAAAGAATCACCAACAACATCTAT AGACTTTTCAACATCACAACTCGTGACTGACTTACAAACTTCTATATCAA GTGATCGTCAAACAAACTCATCCACAGACCTTTCTATAACAGCACTGGAC ATGTTGTCTTCTATGAAGACCTCACAATTTCAAACAGAGTTTTCCACGCA CTTTCTTGACAGCTCTTCGCCATTTTCTTCTTCATCTTCTCCCATTGAAA AGTCTCTTTACTCTTCTTCGATTGCTTTGCCGTCCTCACTTTCATCTTCC TACCTCTTATTTTCTACCTCTGTTAGTTCCCAGTTCTCTAGCTTTTCTTC AAGCATTTCTCCCAGTGTACCTTACAGTGTTTCTGCCAGCACCTCCTCGT CAACCATTATCAGATCAGCTGAAGTGGAACCTTCTTCAAACATCATTTCA ACTTTACGGGCTTTCTCCACTGTTGACAGAAGCTACTCGTCATATGAAGC TTCTTCGCAACCATCAAACGTTGACAGTTTTTTAACATTACAAACGACCA ACTTTGACGCTTCTTCAATCTTACAACAATCAACAACATCAGAAAAGACA GCTTTAACGACTGAATCTGTGGTAACCTCTACCCTCCAGTTATCCTCCCA ACCCTTCCATAGATCCTTTGATATTTTTTCAAGCTCCCTGGAGCACACGT CAACTGTTGCTACAAATTATTTGGTGACGCCCAACAATCTCGCAACATCG CAGTCAGACTCGCCAACATCCGCAAAAGCTATGACCACTGATTCAAAGAG TTCGTCTCCTAAGAACATTCAACCAAGCACATCTACGAGAGAAATAGTCT CATTGACAACCTCCATTATATCCCTACCACCATCAAGAAAACCCTCCACT ACTCAACAACCAACCACAACCACAACGCAACCACCTTTGCCAGCATTTAA GCAAAATATTGATGATACCAGTATATTTGTTTTGCTACCTTTGTCTTATC CTGTCGACAGCTGGGAAGAGATCACTGTTTATGTCGTCATTCCTTCACTT GGTAAGTCACTAATTCTTTTTGTAAATTTTGAGATTTTTATTTCTTTTTG CCACATTTTCTTTCATGTATTCAATTTCGTAATTTCGTATTTAAGAAAAA TTTAAGCATGCAAAAAAGTAGTATCTACGAAAATGTAAAAGGTAACAGTC CTAGTGTCCCTACGGCTATAAAGATACATATTTTTATACAGGTTACAAGT CAACGGGCTCATGGTACAGAATTTTCATCAAGAAAGAAAAACACGACCGT TACCCTGCACTTGTCATGAAGCCCAAGCAACTTTCGAACGATCCACGTCG AAAAAGAAGAAGTGCAGCCAAATTCTTGAACATCAAACTTGGCATCAGTA AAGACTGTACTAAAGTCGATCAAGAGATTTGTAATGGTCCTCTAACTCCC TCAACTAACTACAGGTTTTACTTAAGTCTGTTCCAAAAAACTCCGTACTT TACACATTGCTCTCACGGGAAAAAAATATAACTAAAAGTAATTAATACCT TTTTGAAAAGATAATTTTAGCAGCTCGATGTGAGCTTTAAAGAATTTTCT AAGGATTTGAAAATGAAGATGAAAAGTGAAAGAAAAAATGAAGATTTTTC TACTCGGTAATATCTTTTCTGAAACAGCGCTGATTTCAAGTAAGTATTCA GTTTTTCTTTTTGGTAAAGAGTTATAGCCTCTTGTCCATTTCGATCGTTT CTAGCAATTTATGGCCTATTTTGACCTTTCTCGGAGGCTTGTGGTTTTCG ATCGAAAAGTGATATAAAAGATCTTATAAAAAATCTTTCTAAGGAGGTAT TACTTTTAGCTATATCTTTTCACTATATCTTTTCACCTAAAGAGGACTTT TAGACCAAACTTTACAAGAAGTCTTTTTTTGTTGAGAAATATTGCGTAAT AATTTCAAGACTACTCCCTCTCAGGTTTTCATTTATATTTTCGTCCAATG TATGAAAGACAACCCTCAAAGTTATATTTTCACTATTTTGAACCCACATG AAGTGGTAAAAGAAGGGAGACACACCCATCCTGAAGATCTAATTCAATTT CACAATAAGTTGTTATTGACAAATAGAGACATGGGTATGATAAATATTCT CTTTGATCAAGTGCAGATGTTTTCGAAGATGTATTAAACTTCTATTTTGT TCGTTTAGTATTCAGTTGGAAGTCTTCTTCACCAATGGAACATCTTTGAC AACCCCCTCCTCAAAACCCTGGTCTACTTTACAAAAAGGTTGGTAACTTT TTTTTTTATTTCCTCCTTTGCTAGTTTCTTCTCCAGTAATCTCGTATTCA GATATTACCTTGTTTTGTGATTGAGCTCTCCGAGTAAATGTTTGTACAAC CCGGGACGAAGATATTATTTTTCCCTGTCAACTAATGCCGTTGTCTAGGG AGGCGGTGACTTGTTTCGTGGGAGGTTTATCACTTACAAATCTGTGTTTT GGAAGAACCAAAACAATGTACGCAAGGTTTGATATGAAGGCCTGCTCAAG ATCAATAATGAACGGCTTTATGAAACTATTTTGTTAATATCACGAGAAGC CTTCAGTTAATTTTTGATTTTGATTTGATTTTTTTTANATGGCCAGTTCA TTTTTTTTATTTCGATTCTTGAGGAGTGTGTTCTATAAAATTTGATTTTT TTCTTCCAGCGGTGATCGTGCCACAAGAAGGTGTTCGTTCATCTGTCGTC ATCATCATCCTCACCGTCCTTCTCGTCTTCTTCATCTTTCTCACCATCAT CATCACAATCATCGTCTGCCGTAAGAAACGATCACGAAAATATCTCAGGT ATGTATCTTACGTGTTTCAACCTCTTTTCGTCATTTTTTTTTAGGCCCCT CCCAAGTGTTACCAACTATTCTTCGTTAATATTTTTTTAATGAATTATGA ATTTTATGAGACAGTCCTTGAAACAATCGGTGTTCTTCACTGATCTGAAA GAAAAAAGCTTCCATTAGAGTATAGCAAAAAAAGGTCCTCCGATCCTTCC TACGAGCAGTTCATTTTGTACTACAACCAGGAAATGGACTATATCCAGAA TAATTTGAATTAAACAGGGAAATTATATAACAATTAATGGACATCCTCTC CAAGGGTAGCAGTGCTTTTGCAGCTTGCCGTTACTATATTCAATTTATAG ACATACAGCTAACTGTGGTATTTTGTAGCAGGTTCTCTCTTTGAAATGTA GATTTTATATAAATTAAATGTTTATATGTCACTTCAATAAACCTTCTATC ATTTGCAAAGCTATGTTTCTTGGCGTCAGTTTGTTTGCGATTTCTTAAAA CGATCGATTAACCTCTATGTCCGTCTTTCATAAGTATGTTGCGATTGATG TTGGATGGAAGCAGGCACTTTGCATCTTTTTGTGACGGTCGGATGAATTA AACGCTTTCACGGGCTGAGAAACTCTCATTGTGACGTTCACAGAGAGTGT CAAATAGGTTAAGCCTCGTCATTTGGCACAATGTCCCATCAAAAAGTTTT GATTGATTTTGCAGACGAAATTCTCCAATAAATAGCGCATGCTGGTTATG TTTTCCATCATTTTCTTTTTAAAATATTGGATTCTGATTGCTTAATCTCA TCAAAAAGACTTCATATGGCGCTCTCTTTCCGAAAGAGAAGAAGAGGTTG AAGAAGAAGAGTTTGCTCTTTCAAAACTCCGTCCTCGCTCCTTTATAACC ATTTCCAACTATTGCTTTTGAAATAATTAAGGAGTTTTTAAAGAGTTGTA TAATGGAAAAAGAAGGGCTTAAAAAGCTGAAACGAATAGTTTACGACTAG TTGCTTTTATTTCTGCTGATTGAGAAGTAAAGAAGTCATTTTCTGGGTGA AACATGAAAGGTTGTTTAGGCTAGGCTCTTAATTCGAATATAGATTTATG GAAACTGGAATTCCTTTCTTTCTCAAAACGGAAATGAAATTAGCATTTGT TGATGATTTGTGTTTTCGATTAACTGGATTGGATTGATTGGATGAAACCA TAAATTTGATGATATAAAACATTAACGACGATTACGTAACTCCTTTTCGC AGCTTTAATTGCATCCGGCGTTTGATTTTAGCACAGTGACAAATTTTATG TAGTGTGCAATATATTGGTTGGTATTATCAGTACATTTGATAAGCTGCTT CTGCTCATTAACCACCTTCAAACAATTATTCTTCCTTATTCTCTTCGTTT CGTCATTTTCCTGTTTTCGACAAAACACGTGTTTATTTTCGACCATATTA TTGCGAGGATGTTTTCGCGTGAAGCGGTGAAGAAGAAGGAGGATCAAGGG AAGATGTCCTCTGCACTTGCATTTTTTGTAGACGGGATATGTCCTTTTCA TCACTTGTACTCGGTATCTTGAATTTTGCGAATGCTTTTCAAATACTTTT TAGAGTAATTTTTAAAGGGAGATAAAATATGCTTTTGCTGTAAAATCGGG TTTTGTTTTGTTGTTGCCTTGACAACAATCATTCCATCAAAATGGCTACG GCTTATCCCCCTTCCTGGTGCAAAAAAGCGGCGCCAATAATCCCTCTTCT ATCTCTATTTAATTAATCCAACATTTTCATTACTTTTTCAAAAGAAGACT TAATTTGTCTTTTCCTTCTCACTCTTTTAATTTGTTATTTCGGGAGATGG ATATTATATGTTCTTCCTTTGCAAGCTTCAAAACATCAGCACATGATATT GCTGCTAATGTCTTTGTTTCGCACCGGCGTAGGAAACTTACTTTTGATCA ATTAAGAAAGACAATAGAATGTAAGAATTGATCTCTTAATGGCTTTGCGT CTCATCAGCCAAAATATTACTTCACTAATTGTCTAATCTTTATCACTTGA TGATTTCAACTGGCTTGTGTGTTCTTTAATAGATGTCCTTATGGAAGTTG TTTGCGGAGAGTCAACGGAGTTAGAAGTACTTTAGTAAAGTCAATGTTTA CACATTATGTAATGTGGCGAGAACGTCCTTCTTTAATTTTAGCGAATGAT ATCATGGGAATTTGCGACCGTTATTTTTTTGTGTGTTTTTGTGATGAGTT GTACATCATTTTTGGTCTTTCGTGTTTAAGCGTCACTGAGGGGTAATGAA AGTTCACTTTCAGATCTTTTGATACAGAAGGGGGGAACATTCTGGTTGGG CGTTTGATTGTTTTGTTTGAGACATGGATTAAATGGGAATGGAAGGGAAT TCAGCTGCTTCGTTGAGTTTTCACGTTTACACATCATCATAGAGAGACAC ATGCACCTTCTCATTTCATTTTCAACCTCAAAGAAAAGAAAACAGAAAGA AAGGGAATATTTCTCAATAATTATTTCTTCTCCAACATCTTCATATATTA CATCGTATTCATTTTTTCCAAAACATGTGTCTGTTTGTCTTCTCTATTTT TCTTCTTTCTTTCTTCTTCTTTCCATTTCTCGACTTGAACACTCTTCCCT CTCATCACAACGTTCAAGTGAAAGAGTGATCTGTTTCTTTCTCGACTGAA CAGCACAGCAAGACTNTGAACACTCTTCCCTCTCATCACAACACAACGTT CAAGTGAAAGAGTGATCTGTTTCTTTCTCGACTGAACAACACAGCAAGAC TCTCACGATGTGTTCCGAAGCACCCTCAAACTACCGAAGACGTCGTTTTC AAATGTGCTTCTGCTTAGTGTAAGTCTTTACTTCCCTTTTCAACCTTTTT TTCCTTTCTTTCTGTTTTCATGCAGGGCTTTAGAGGTGGTGAATTTCCTC TGTTTTCATCGCGGAAATCTAGTTTCTTTTTCTGATTTTGAACACCCAAA AGATAATGGAGGAAGGGTGATTTCCACCATCGGTACTTTCCGACTGATGT TGTTGTGTGGGCTTCTCTTGAGTTCAGTGGGTAGTTCATCCTATGGAAAG CAATAGGAACAAAATACAACAAGTCAATGATAGAAATTTTAATTGACTTA TTCACATGGTTAGGTGAACTTTCTTTTTGTGATGAGTACTTTTATAAAAA GAGAAAGTCGAAGCTTTATTAAACTGTCTTGATCCTGTATTATAATGTTT ATTTTGAACATGAGACAAAGAGAAGTGTATGAATCATGCGAGAAGTTAGT GACATCTCTTCAATTATAAATAACATTCTTACTTCAAAGCATTCACACCA CACTTCTATCGAAATTCATACACTGTATTTAAAACAAGTTGAATGTTGCA TTCTGTAACTTCGCAATGAAGAAGAAAATTTGCTGTTGATTTTCCTTTTA TGGTGTTTGTATGTGTTGAATGATTGGTTTCTGCTTTGACGTGCTTCCAT CTCTGACTGAGAATCAATGTCTCATTTCATTCAAATGACATACTTTGCAC TCACACAAGTCTTCTAACTGCTTTTACTGTGTATTATATTTATTAGTTGC AAAAAATTAAAAACAAAGGGATCATTTTTGAAGATATGCGGATGTACGAC TTGGTGGACGAGAACAATGTGTTGTTTGACAAGCAAACCATCAAACGACA CAATAGTCGTGAACTGAACAACAATGAACCCGCTCTTCTCCGAAGAACTG TTTCTTTTTCCAACACCATAAGGTGTAAATGTTCAAAACTCTTAACTTTA ACACCCCATCTTCACCGTAGAGGGCAGCAAGACAAGGACAGTATGGGTGT GTCCCTCATGTCCACCAACTATCAGAGGAATGGGGCGAGCAGGTTGAAGA AGAAATTCTCAGGACCAGATATTCTCACTGAGCGACGAAAAAGTCTGAAA GGAATGACGAGGTAAGTGTTTTCTCTTTTTTCTAATTTTTAGATCATGGC CGTTTGTTTATTTTTTCGAGTTTGAGCGAAACTGTTTTGTCTGAACGAGA TATGTCACACTCTGAAGGGTTTCCGTCAATAGTCAATAGACTGACGGGTT TTCGGGACTTTTAAAATAATGATATTTTCCAAACAATCAGCCTGCATTAA CTATATATGATGATGTCATCATTAGGTAATGTTAAAATGCATAATTTATT ACCGACGGCCCGAACTGAGTGATAGGAAGATAATAAACGCAATAACAAAT ATAGAAATCGTTTTATCTTTACATCGAACATGCAATTTCACAAACATTCT TCTGATAAGAGAGGTAGCAAGCCATGTTTCAAGATAAGGCCTTTTGTTTC GCATTTTTAATAAGCATTTGAACACCCCTCGACGTGATGTATCGCTTGAT TAATGATACCGTTGTAAATATAAAAGCCTGTCAAAGTGTCATTCTTCATA ATATGTTGTTTTCATAATGTATTTTCGTTTGTTTGTCAGACCTGTCTTCA TCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGCATCGGATAGTACCTTT CGTTTTGCCGAAGAATTTGAGGTATGATGTTACCCTTTCACCACCACTTT CACAAGTTTGTGTCAAAAATGACAAACGTGAACTTTTGGAAATTAACCTT TACTTATATCTTCCCTTTCATTAATATTTGTAATAACCAAACAAGTTGAC CATTTACACGCCATAATTTCTGTACAACATTTTTTTGGATGTTATTCAAA ATGGGACGGAACGTCTAATTAATGATCATTAAGTCTTTTTAAGCCATCCT TAATATTACACAATTTCTTCTAATTATAACTTTCTTAATGTTTATCTTTC AGTCTATACGGGATGTCGGGAANATGTTTCAATCTTTAAAGCATTAAAAG CTTTATAAATCTTTAAAGCATTAAAAGCTTTATAAGTGCATGTCATGACC TTTCAGTGGGGGCATTTAGTGAAAGCTATGACTAGTTTAGATTTTAGATC ATGGCCGTTTGTTTATTTTTTCGAGTTTGAGCGAAACTGTTTTGTCTGAA CGAGATATGTCACATTCATTCTGAAGGGTTTCCGTCAATAGTCAATAGAC TGACGGGTTTGCGGGACTTTTAAAATAATGATATTTTCCAAACAATCAGC CTGTATTAACTATATATGATGATGTCATCATTAGGTAATGTTAAAATGCA TAATTTATTACCGACGGCCCGAAACTGAGTGATAGGAAGATAATAAACGC AATAACAAATATAGGCATCGTTTTATCTTTACATCGAACATGCAATTTCA CAAACATTCTTCTGATAAGAGAGGTAGCAAGCCATGTTTCAAGATAAGGC CTTTTGTTTCGCATTTTTAATAAGCATTTGAACACCCCTCGACGTGTGTA TCGCTTGATTAATGATACCGTTGTAAATATAAAAGCCTGTCAAAGTGTCA TTCTTCATATGCTCTTATTTTCATAATGTATTTTCGTTTGTTTGTCAGAC CTGTCTTCATCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGCATCGGAT AGTACCTTTCGTTTTGCCGAAGAATTTGAGGTATGATGTTACCCTTTCAC CACCACTTTCACAAGTTTGTGTCAAAAATGACAAACGTGAACTTTTGGAA ATTAACCTTTACTTATATCTTCCCTTTCATTAATATTTGTAATAACCAAA CAAGTTGACCATTTACACGCCATAATTTCTGTACAACATTTTTTTGGATG TTATTCAAAATGGGACGGAACGTCTAATTAATGATCATTAAGTCTTTTTA AGCCATCCTTAATATTACACAATTTCTTCTAATTATAACTTTCTTAATGT TTATCTTTCAGTCTATACGGGATGTCGGGAAATTTGAGAGGCATGAAGTT GCTGACATGGCAGAAAATAACGGCAAAAACCGATACGTCAACGTCTTACC ATGTAAGTCAAGTTTCGTTTTAGGAAAATTTTTGGCTCTGAATTGAATTT ATGATTCTTTCCTTAAAGAGAGATTTTTAGAAATGTAGAAATTTTTTCTT GGTATTTCCTGTGATGTGACCACCATGCAGTCTTTATAGAATTTCTCCTT ATTAATCATCTGTATTTTGGTTTACCAGACGATTATACGCGAGTGAAACT ATCGAGTATAGACGACGAACCTGGTTCGGACTATATCAACGCTAATTATA TTCACGTGAGTTGTTGTGCATTCATCAATTTTAGCTTTTTGGATTATTAT TTTTTCAAGATAATTTTTTAACTTGCCATACCGGATCTGTTTTACAGCGG AAACAAATCAGACTTTAATACGGTTAGAATTTCGTCTTTGTAGGGTTACA AGCAACCACGAGCATACATAGCCACACAAGGACCCCTCCCAAGTACCACA GACCACTTCTGGCAGATGGTCTGGGAACAAAAATCTCGAATCATTGTCAT GGTTACGCAATGCAATGAGAAGAATCGTGTAAAATGTCATCAATATTGGC CTGCATCAGGTTCGACGCGATACGGAGAAATCGAAGTAACGCTTAAGCAC GAAACAATATATCCAGAATGGACCGAACGGGAATTTCTAATGACATTCGA GGTGAGGAAAACTTCCCACGTTTTCTTGAACAGTTGATATTGGGTTGTCT GGTTCTCACTCTTTTAACGACGTTTATGGAGAAATATTCGTCTCCTATTA ATAACATGAATAAAAACAATATCTTTTATTATTTTAAAGGGCGAATCTCG ATTACTCAGACATTTTCAATACACAGCATGGCCTGACCACGGCGTACCTC GCTCATCTAAAGAAATGTTACAGTTCGTGACGACCGTTCGGTTTCATCAA CGGCCCGATGACGGCCCTGTCATCTGTCATTGCTCGTAAGTTCTCTCCTC TTCACTTGCAGTAAATGACGTCATTTGTTTTCTTTCGGTTTTTAGAACAG CTCGGTAACGTAAAGGGTGAAGGGGTTGTATTTTTAGATTGGGAAATTAA ACTTATTAAAAGAAGTTCTTAAAAATTTATCTTGTTCGTGCCTCCTTAAC TTTTCATGCCAACCTATCTTAATTCGGAGCAATTTTCCTTAATGATAATT TCCTACACTTTTCTTGAATAGTTTCCTCATTAAATTTAATCAGAAAATTC ATGACAATCGGTTAAACCAGCTTAACGCAACCCATTAGATAAATTGCACA ATTTCGTGGTGGTGAATAACCAAGGGTAGCCATTCTTTCACACAACCAAT ATTTACTGCGACGCTGTTAAACGCTTTTTTTCGTAATTTCTACACACACC AAACCTCAAAAAACCCCTGACATACTTAACTTTATACTAGTTCTTTTACG GTCTGTAAGTGTTCAAAATCTCATTAATCAAGCCTTGTTGTAAACGATTG TAGGGACATAAGATGCCATAACTTACTGCATCCTGTTATGACATAATATT AAGTAACAATTAATTATTTTGTTTGTGTTTTAGGGCGGGAGTTGGGCGCA CAGGAACTTACTTGTGTGTTGATATTCTGGTCAATAAACTACAGACCGAA AACAATGTAGATGTTTATGGTGTAGTGTGTTTAATGAGGACTCAACGATG CTCCATGGTGCAGACTGAGGTAATGAAATACAGACCACATTTTTAAGCAT CTTCAAAACCTAATCTTTATTCAACATTTTTACAAACCTACTGTTTTCTA GAATTGTACTCTATACTAAAATATAGGATTGCTTTTACTTTCAGGACCAA TACATCTTCATTCACCGAGTCATATTGGACTATTTGAAACAACGTGACGA AAAGCAACAAATCTTTTCCGGATATTCGACCTTAGAAATGCGAAGGAAAA GTAAAAGTGAATCCAATCCTGTCGAACCTGCGGCTGAAGGTACGTTTCAA GTTTGTTTTGATAAGTAATCCTCAAGAACTGTCTTCTCAGAACGCAAAAA CCGTAGATCAAGAATAAACATAACGAATTCGAGAAAGAAACAAATCGTTT TTTGTTGGAACTTGATCAGACTTGTTTCATAATTCTGTCTTCTCAGAATG TAAAAACCATAGACCTCATCAGATTTGATATAAAAAAATCAATCAACAAA TAAACAATTTTCTAAGAAATCATAACGAACTCGTGAAAGAAACAAATCAT TTTTGTTGGCACTTGATCAAATTTGTTTCATAATCTGTATGTTATCATAT ACAATCAGGTTTTTTACTCAATTAAGTTCGCATTACAGATCGTCTGATCT TTCGGTGAATTACCGTGACGTCATAATAGATCACGCTGGTCTTTGATGGG AATCAGTATTAGGAAATCGCAGTTTACAAATTTATCAAGAAATTAAGAAA AGCAATTCGATTATAAAATCTGTGATATCTTATCCCCCTGATTTCTCCAT ATAAATGCAACATTGTTTGGTGAGAATTCAGCCTTTGTTCATCCCTTAAT TATTTTTTCTCTCATCTTCAGCATTATTGAAAGAAGAAGAAAAAGAAGAC GAGGAAGATGAAAATCTGGATAATGATGATGATGAAACGAAATCTGACGA TTTTCTTTCCGAAGAATTCGAGAACAGCGATTTAGAAACACCTCCTGTAT AATACGCATACTACCTCTTCATATTTGTAGACTTTTTTTTGACTTTATGT TGTGTAGAAAGAAAATGGATGCCCTTTTATCGGGTAGGATTTCATCTTAA CAAGTGATGATCAAATATCACTCACCATGCATCTCCCTCATACTTCGTTC TTTAAAACATTTTTATTGTAATTTCTTTTTAAATGGAAATTGTAAATAGG TACACTAGAAATTTAATTTTTATTTTGAAATTTTATATAAATAGCGAGAG ATAATATTAGTCTACTTTATTGTTATATTCTTCTTGGTTTACTTTCGTTG AATTCTTTCAAGATACCGATTGGCATAAGAAGAAGCTTTCTTTTTTGGGG GCTAAAGAAAACAAGATGATAATATAATAATTTTGTGTTCTTATTTATTA TTGTAAATAATATTCTTCACATTGAAAGTGAGGTAAAGAAATATCTTAAA ACAAACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000611XLOC_000611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001089-exon-sc0000007-1575043694:73129..73200TCONS_00001089-exon-sc0000007-1575043694:73129..73200Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:72510..72542TCONS_00001089-exon-sc0000007-1575043694:72510..72542Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:70900..72193TCONS_00001089-exon-sc0000007-1575043694:70900..72193Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:70487..70709TCONS_00001089-exon-sc0000007-1575043694:70487..70709Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:69663..69742TCONS_00001089-exon-sc0000007-1575043694:69663..69742Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:69103..69241TCONS_00001089-exon-sc0000007-1575043694:69103..69241Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:65140..65280TCONS_00001089-exon-sc0000007-1575043694:65140..65280Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:63521..63602TCONS_00001089-exon-sc0000007-1575043694:63521..63602Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:63149..63239TCONS_00001089-exon-sc0000007-1575043694:63149..63239Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:62896..62972TCONS_00001089-exon-sc0000007-1575043694:62896..62972Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:62500..62757TCONS_00001089-exon-sc0000007-1575043694:62500..62757Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:62216..62361TCONS_00001089-exon-sc0000007-1575043694:62216..62361Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:61482..61617TCONS_00001089-exon-sc0000007-1575043694:61482..61617Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:61212..61356TCONS_00001089-exon-sc0000007-1575043694:61212..61356Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1575043694:60040..60629TCONS_00001089-exon-sc0000007-1575043694:60040..60629Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:73129..73200TCONS_00001089-exon-sc0000007-1510915933:73129..73200Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:72510..72542TCONS_00001089-exon-sc0000007-1510915933:72510..72542Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:70900..72193TCONS_00001089-exon-sc0000007-1510915933:70900..72193Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:70487..70709TCONS_00001089-exon-sc0000007-1510915933:70487..70709Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:69663..69742TCONS_00001089-exon-sc0000007-1510915933:69663..69742Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:69103..69241TCONS_00001089-exon-sc0000007-1510915933:69103..69241Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:65140..65280TCONS_00001089-exon-sc0000007-1510915933:65140..65280Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:63521..63602TCONS_00001089-exon-sc0000007-1510915933:63521..63602Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:63149..63239TCONS_00001089-exon-sc0000007-1510915933:63149..63239Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:62896..62972TCONS_00001089-exon-sc0000007-1510915933:62896..62972Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:62500..62757TCONS_00001089-exon-sc0000007-1510915933:62500..62757Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:62216..62361TCONS_00001089-exon-sc0000007-1510915933:62216..62361Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:61482..61617TCONS_00001089-exon-sc0000007-1510915933:61482..61617Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:61212..61356TCONS_00001089-exon-sc0000007-1510915933:61212..61356Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1510915933:60040..60629TCONS_00001089-exon-sc0000007-1510915933:60040..60629Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:73129..73200TCONS_00001089-exon-sc0000007-1491911889:73129..73200Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:72510..72542TCONS_00001089-exon-sc0000007-1491911889:72510..72542Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:70900..72193TCONS_00001089-exon-sc0000007-1491911889:70900..72193Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:70487..70709TCONS_00001089-exon-sc0000007-1491911889:70487..70709Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:69663..69742TCONS_00001089-exon-sc0000007-1491911889:69663..69742Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:69103..69241TCONS_00001089-exon-sc0000007-1491911889:69103..69241Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:65140..65280TCONS_00001089-exon-sc0000007-1491911889:65140..65280Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:63521..63602TCONS_00001089-exon-sc0000007-1491911889:63521..63602Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:63149..63239TCONS_00001089-exon-sc0000007-1491911889:63149..63239Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:62896..62972TCONS_00001089-exon-sc0000007-1491911889:62896..62972Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:62500..62757TCONS_00001089-exon-sc0000007-1491911889:62500..62757Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:62216..62361TCONS_00001089-exon-sc0000007-1491911889:62216..62361Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:61482..61617TCONS_00001089-exon-sc0000007-1491911889:61482..61617Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:61212..61356TCONS_00001089-exon-sc0000007-1491911889:61212..61356Clytia hemisphaericaexon
TCONS_00001089-exon-sc0000007-1491911889:60040..60629TCONS_00001089-exon-sc0000007-1491911889:60040..60629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:60040..73200 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03597 2.81016 0.610756 0.236144 22.6831 25.922 7.78111 12.4738 7.2637 11.8918 10.2272 7.32807 4.78997 10.6429 12.416 11.6705 14.2464 26.027 7.73247 0.901504 11.1142 11.3363 3.24994 2.11605 2.85217 0.0163135 5.04736 3.94143 0.812824 2.89995
Blast
BLAST of TCONS_00001089 vs. Swiss-Prot (Human)
Match: PTPRB (Receptor-type tyrosine-protein phosphatase beta OS=Homo sapiens GN=PTPRB PE=1 SV=3)

HSP 1 Score: 315.079 bits (806), Expect = 5.044e-88
Identity = 182/456 (39.91%), Postives = 261/456 (57.24%), Query Frame = 1
Query: 1519 SAAKFLNIKLG-----ISKDCTKVDQEICNGPLTPSTNYSIQLEVF----------FTNGTSLTTPSSKPWSTLQKAVIVPQEGVRSSXXXXXXXXXXXXXXXXXXXXXXXXCRKKRSRKYLRGQQDKDSMGVSLMSTNYQRNGASRLKKKFSGPDILTERRKSLKGMTRPVFIRDFRAWVERSASDSTFRFAEEFESIRDVGKFERHEVADMAENNGKNRYVNVLPYDYTRVKLSSIDDEPGSDYINANYIHGYKQPRAYIATQGPLPSTTDHFWQMVWEQKSRIIVMVTQCNEKNRVKCHQYWPAS-GSTRYGEIEVTLKHETIYPEWTEREFLMTFEGE---SRLLRHFQYTAWPDHGVPRSSKEMLQFVTTVR--FHQRPDDGPVICHCSAGVGRTGTYLCVDILVNKLQTENNVDVYGVVCLMRTQRCSMVQTEDQYIFIHRVILDYLKQR 2823
            S +K  NIKLG     +   C    Q+ C+GPL P T Y I +  F          FT      T  S P +T  + +    EGV + + +I + V +V  +          CR+K S       +++ S  +S+           R  +  S    L   +K  +  + P+ I  F     +  +DS +  ++E+E ++DVG+ +  ++A + EN GKNRY N+LPYD TRVKLS++DD+P SDYINA+YI G    R YI TQGPLP T D FW+MVWEQ    IVMVTQC EK RVKC  YWPA   S  YG++ + +  E++ PEWT REF +  E +    RL+RHF YT WPDHGVP +++ ++QFV TVR   ++ P  GP + HCSAGVGRTGT++ +D ++ +L ++++VD+YG V  +R  R  MVQTE QY+++H+ + D L+ R
Sbjct: 1539 SNSKSFNIKLGAEMESLGGKCDPTQQKFCDGPLKPHTAYRISIRAFTQLFDEDLKEFTKPLYSDTFFSLPITTESEPLFGAIEGVSAGLFLIGMLVAVVALLI---------CRQKVSHG-----RERPSARLSI-----------RRDRPLSVH--LNLGQKGNRKTSCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRAR 1967          
The following BLAST results are available for this feature:
BLAST of TCONS_00001089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTPRB5.044e-8839.91Receptor-type tyrosine-protein phosphatase beta OS... [more]
back to top