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TCONS_00001088 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001088
Unique NameTCONS_00001088
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001088 ID=TCONS_00001088|Name=TCONS_00001088|organism=Clytia hemisphaerica|type=transcript|length=2718bp
ttttttgatattttagagATTGATATCCATGCGGAATGATGGACGCCAAA
GGAATAACTCGTCAAGTTTAAGATGGTGATGCTTCTGCTTGCCATTTGGT
TTTATGGTATAACAGCAACAACGATACAGAATGAATTTTCATCCACTTTT
ACATCCATCGAACTTGCTTCGATTTCTCCATCCGCCAGTTCGATGAAAAC
CAACACCCTAAATGAACCTTCCCGAACACCACCCACTCAAAGctCCCTGG
AGCACACGTCAACTGTTGCTACAAATTATTTGGTGACGCCCAACAATCTC
GCAACATCGCAGTCAGACTCGCCAACATCCGCAAAAGCTATGACCACTGA
TTCAAAGAGTTCGTCTCCTAAGAACATTCAACCAAGCACATCTACGAGAG
AAATAGTCTCATTGACAACCTCCATTATATCCCTACCACCATCAAGAAAA
CCCTCCACTACTCAACAACCAACCACAACCACAACGCAACCACCTTTGCC
AGCATTTAAGCAAAATATTGATGATACCAGTATATTTGTTTTGCTACCTT
TGTCTTATCCTGTCGACAGCTGGGAAGAGATCACTGTTTATGTCGTCATT
CCTTCACTTGGTTACAAGTCAACGGGCTCATGGTACAGAATTTTcatcaa
gaaagaaaaacacgACCGTTACCCTGCACTTGTCATGAAGCCCAAGCAAC
TTTCGAACGATCCACGTCGAAAAAGAAGAAGTGCAGCCAAATTCTTGAAC
ATCAAACTTGGCATCAGTAAAGACTGTACTAAAGTCGATCAAGAGATTTG
TAATGGTCCTCTAACTCCCTCAACTAACTACAGTATTCAGTTGGAAGTCT
TCTTCACCAATGGAACATCTTTGACAACCCCCTCCTCAAAACCCTGGTCT
ACTTTACAAAAAGcGGTGATCGTGCCACAAGAAGGTGTTCGTTCATCTGT
CGTCATCATCATCCTCACCGTCCTTCTCGTCTTCTTCATCTTTCTCACCA
TCATCATCACAATCATCGTCTGCCGTAAGAAACGATCACGAAAATATCTC
AGAGGGCAGCAAGACAAGGACAGTATGGGTGTGTCCCTCATGTCCACCAA
CTATCAGAGGAATGGGGCGAGCAGGTTGAAGAAGAAATTCTCAGGACCAG
ATATTCTCACTGAGcgacgaaaaagtctgaaaggAATGACGAGACCTGTC
TTCATCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGCATCGGATAGTAC
CTTTCGTTTTGCCGAAGAATTTGAGTCTATACGGGATGTCGGGAAATTTG
AGAGGCATGAAGTTGCTGACATGGCAGAAAATAACGGCAAAAACCGATAC
GTCAACGTCTTACCATACGATTATACGCGAGTGAAACTATCGAGTATAGA
CGACGAACCTGGTTCGGACTATATCAACGCTAATTATATTCACGGTTACA
AGCAACCACGAGCATACATAGCCACACAAGGACCCCTCCCAAGTACCACA
GACCACTTCTGGCAGATGGTCTGGGAACAAAAATCTCGAATCATTGTCAT
GGTTACGCAATGCAATGAGAAGAATCGTGTAAAATGTCATCAATATTGGC
CTGCATCAGGTTCGACGCGATACGGAGAAATCGAAGTAACGCTTAAGCAC
GAAACAATATATCCAGAATGGACCGAACGGGAATTTCTAATGACATTCGA
GggCGAATCTCGATTACTCAGACATTTTCAATACACAGCATGGCCTGACC
ACGGCGTACCTCGCTCATCTAAAGAAATGTTACAGTTCGTGACGACCGTT
CGGTTTCATCAACGGCCCGATGACGGCCCTGTCATCTGTCATTGCTCgGC
GGGAGTTGGGCGCACAGGAACTTACTTGTGTGTTGATATTCTGGTCAATA
AACTACAGACCGAAAACAATGTAGATGTTTATGGTGTAGTGTGTTTAATG
AGGACTCAACGATGCTCCATGGTGCAGACTGAGGACCAATACATCTTCAT
TCACCGAGTCATATTGGACTATTTGAAACAACGTGACGAAAAGCAACAAA
TCTTTTCCGGATATTCGACCTTAGAAATGCGAAGGAAAAGTAAAAGTGAA
TCCAATCCTGTCGAACCTGCGGCTGAAGCATTattgaaagaagaagaaaa
agaagacgaGGAAGATGAAAATCTggataatgatgatgatgaaacgAAAT
CTGACGATTTTCTTTCCGAAGAATTCGAGAACAGCGATTTAGAAACACCT
CCTGTATAATACGCATACTACCTCTTCATATTTgtagacttttttttgac
tttatgtTGTGTAGAAAGAAAATGGATGCCCTTTTATCGGGTAGGATTTC
ATCTTAACAAGTGATGATCAAATATCACTCACCATGCATCTCCCTCATAC
TTCGttctttaaaacatttttattgtaatttctttttaaatggaAATTGT
AAATAGGTACactagaaatttaatttttattttgaaattttatataaaTA
GCGAGAGATAATATTAGTCTACTTTATTGTTATATTCTTCTTGGTTTACT
TTCGTTGAATTCTTTCAAGATACCGATTGGCATAAGAAGAAGCTTTCTTT
TTTGGGGGCTAAAGAAAACAAGATGATAATATAATAATTTTGTGTTCTTA
TTTATTATTGTAAATAATATTCTTCACATTGAAAGTGAGGTAAAGAAATA
tcttaaaacaaacaaaag
Run BLAST on NCBI

transcript from alignment at sc0000007:60040..73200-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001088 ID=TCONS_00001088|Name=TCONS_00001088|organism=Clytia hemisphaerica|type=transcript|length=13161bp|location=Sequence derived from alignment at sc0000007:60040..73200- (Clytia hemisphaerica)
TTTTTTGATATTTTAGAGATTGATATCCATGCGGAATGATGGACGCCAAA GGAATAACTCGTCAAGTTTAAGGTTGGTTGATTATCTTTGAAAAGTAGAT TTGTCTGTGGTTCTTTAGAATCATTTTCTTTATGGATAATTCAATAATAT TTTAGCTACATGCGTGACTTGATTAGTATTCATCCGCCCCTTGAGAGCTT GTTATAAATGGATGAAAATGATAGTTAATCAAAAAATCACTATCAGACAT TTTGAGTAGCAATTAGCAATTTGTGTTGAATGAAATGAGATGAGGGTCAT TTAGTTCGGTAATTGCTAGTTATTCGCTTCCTATATTTGATTGGAAGTTG AGAAAAGAGATCTGTAATGTGTGTTTCTATGAAGTTTATTTCTACTTGAG ATATGATTTGGATGACTCTTTGTGAAAACGATGTATCATCATCATGATCT TTGAGAAGGTTGTCGTAATATCAAAGTAGTGTTATCCTCTTCATTACGTT TTATAGAGTTCATCTAATACTTATTAAGCGTATAATATATATTCATTTCA CAAAAAGCTGTAAGTCTTATCATTCATATCGCTTTCATTTTTTATATGTT GTATGAACAGTTAAGAGAGGGGTGTCGTATACTGAACTTTTTTGGTTTTC TTTCTTAGATGGTGATGCTTCTGCTTGCCATTTGGTTTTATGTAAGTTTT CGTTTCTTTTTCATTCTTCGCATTCTCAGAATATATTTTTGTAATTCTTC AGGAAGTCTGGATTAGTTAAAATAAAATGTCTACGTGATGGTATTCTATA GTATGTCTCGAGACACGCCCTTTTATATAAGATCCTGACCCGTGAATAGC TACTTATATTTTGGGCAACGGGTTGGTATGATATGTGCAGCGAAAAATAG TAAAACGATAATTGTTCCCGTTTCGTTGAACCAGGAAATTTAGAACAAGG AAATTTAATGATCCATCACTTCTTGGAATGAATTACTGATTTTTTCGTTT CCTTCAGGGTATAACAGCAACAACGATACAGAATGAATTTTCATCCACTT TTACATCCATCGAACTTGCTTCGATTTCTCCATCCGCCAGTTCGATGAAA ACCAACACCCTAAATGAACCTTCCCGAACACCACCCACTCAAAGGTATAG CTCCTCAATGAACATCATTGCTGAAAGACTGGAAACAAGTAACCTATCAA TAGACATGACTGTACGAACTTTTATATCAACAACTAAATTGATAATGGTA CCTGACTTTTCTACAGACATGAACGTTAAAGAATCACCAACAACATCTAT AGACTTTTCAACATCACAACTCGTGACTGACTTACAAACTTCTATATCAA GTGATCGTCAAACAAACTCATCCACAGACCTTTCTATAACAGCACTGGAC ATGTTGTCTTCTATGAAGACCTCACAATTTCAAACAGAGTTTTCCACGCA CTTTCTTGACAGCTCTTCGCCATTTTCTTCTTCATCTTCTCCCATTGAAA AGTCTCTTTACTCTTCTTCGATTGCTTTGCCGTCCTCACTTTCATCTTCC TACCTCTTATTTTCTACCTCTGTTAGTTCCCAGTTCTCTAGCTTTTCTTC AAGCATTTCTCCCAGTGTACCTTACAGTGTTTCTGCCAGCACCTCCTCGT CAACCATTATCAGATCAGCTGAAGTGGAACCTTCTTCAAACATCATTTCA ACTTTACGGGCTTTCTCCACTGTTGACAGAAGCTACTCGTCATATGAAGC TTCTTCGCAACCATCAAACGTTGACAGTTTTTTAACATTACAAACGACCA ACTTTGACGCTTCTTCAATCTTACAACAATCAACAACATCAGAAAAGACA GCTTTAACGACTGAATCTGTGGTAACCTCTACCCTCCAGTTATCCTCCCA ACCCTTCCATAGATCCTTTGATATTTTTTCAAGCTCCCTGGAGCACACGT CAACTGTTGCTACAAATTATTTGGTGACGCCCAACAATCTCGCAACATCG CAGTCAGACTCGCCAACATCCGCAAAAGCTATGACCACTGATTCAAAGAG TTCGTCTCCTAAGAACATTCAACCAAGCACATCTACGAGAGAAATAGTCT CATTGACAACCTCCATTATATCCCTACCACCATCAAGAAAACCCTCCACT ACTCAACAACCAACCACAACCACAACGCAACCACCTTTGCCAGCATTTAA GCAAAATATTGATGATACCAGTATATTTGTTTTGCTACCTTTGTCTTATC CTGTCGACAGCTGGGAAGAGATCACTGTTTATGTCGTCATTCCTTCACTT GGTAAGTCACTAATTCTTTTTGTAAATTTTGAGATTTTTATTTCTTTTTG CCACATTTTCTTTCATGTATTCAATTTCGTAATTTCGTATTTAAGAAAAA TTTAAGCATGCAAAAAAGTAGTATCTACGAAAATGTAAAAGGTAACAGTC CTAGTGTCCCTACGGCTATAAAGATACATATTTTTATACAGGTTACAAGT CAACGGGCTCATGGTACAGAATTTTCATCAAGAAAGAAAAACACGACCGT TACCCTGCACTTGTCATGAAGCCCAAGCAACTTTCGAACGATCCACGTCG AAAAAGAAGAAGTGCAGCCAAATTCTTGAACATCAAACTTGGCATCAGTA AAGACTGTACTAAAGTCGATCAAGAGATTTGTAATGGTCCTCTAACTCCC TCAACTAACTACAGGTTTTACTTAAGTCTGTTCCAAAAAACTCCGTACTT TACACATTGCTCTCACGGGAAAAAAATATAACTAAAAGTAATTAATACCT TTTTGAAAAGATAATTTTAGCAGCTCGATGTGAGCTTTAAAGAATTTTCT AAGGATTTGAAAATGAAGATGAAAAGTGAAAGAAAAAATGAAGATTTTTC TACTCGGTAATATCTTTTCTGAAACAGCGCTGATTTCAAGTAAGTATTCA GTTTTTCTTTTTGGTAAAGAGTTATAGCCTCTTGTCCATTTCGATCGTTT CTAGCAATTTATGGCCTATTTTGACCTTTCTCGGAGGCTTGTGGTTTTCG ATCGAAAAGTGATATAAAAGATCTTATAAAAAATCTTTCTAAGGAGGTAT TACTTTTAGCTATATCTTTTCACTATATCTTTTCACCTAAAGAGGACTTT TAGACCAAACTTTACAAGAAGTCTTTTTTTGTTGAGAAATATTGCGTAAT AATTTCAAGACTACTCCCTCTCAGGTTTTCATTTATATTTTCGTCCAATG TATGAAAGACAACCCTCAAAGTTATATTTTCACTATTTTGAACCCACATG AAGTGGTAAAAGAAGGGAGACACACCCATCCTGAAGATCTAATTCAATTT CACAATAAGTTGTTATTGACAAATAGAGACATGGGTATGATAAATATTCT CTTTGATCAAGTGCAGATGTTTTCGAAGATGTATTAAACTTCTATTTTGT TCGTTTAGTATTCAGTTGGAAGTCTTCTTCACCAATGGAACATCTTTGAC AACCCCCTCCTCAAAACCCTGGTCTACTTTACAAAAAGGTTGGTAACTTT TTTTTTTATTTCCTCCTTTGCTAGTTTCTTCTCCAGTAATCTCGTATTCA GATATTACCTTGTTTTGTGATTGAGCTCTCCGAGTAAATGTTTGTACAAC CCGGGACGAAGATATTATTTTTCCCTGTCAACTAATGCCGTTGTCTAGGG AGGCGGTGACTTGTTTCGTGGGAGGTTTATCACTTACAAATCTGTGTTTT GGAAGAACCAAAACAATGTACGCAAGGTTTGATATGAAGGCCTGCTCAAG ATCAATAATGAACGGCTTTATGAAACTATTTTGTTAATATCACGAGAAGC CTTCAGTTAATTTTTGATTTTGATTTGATTTTTTTTANATGGCCAGTTCA TTTTTTTTATTTCGATTCTTGAGGAGTGTGTTCTATAAAATTTGATTTTT TTCTTCCAGCGGTGATCGTGCCACAAGAAGGTGTTCGTTCATCTGTCGTC ATCATCATCCTCACCGTCCTTCTCGTCTTCTTCATCTTTCTCACCATCAT CATCACAATCATCGTCTGCCGTAAGAAACGATCACGAAAATATCTCAGGT ATGTATCTTACGTGTTTCAACCTCTTTTCGTCATTTTTTTTTAGGCCCCT CCCAAGTGTTACCAACTATTCTTCGTTAATATTTTTTTAATGAATTATGA ATTTTATGAGACAGTCCTTGAAACAATCGGTGTTCTTCACTGATCTGAAA GAAAAAAGCTTCCATTAGAGTATAGCAAAAAAAGGTCCTCCGATCCTTCC TACGAGCAGTTCATTTTGTACTACAACCAGGAAATGGACTATATCCAGAA TAATTTGAATTAAACAGGGAAATTATATAACAATTAATGGACATCCTCTC CAAGGGTAGCAGTGCTTTTGCAGCTTGCCGTTACTATATTCAATTTATAG ACATACAGCTAACTGTGGTATTTTGTAGCAGGTTCTCTCTTTGAAATGTA GATTTTATATAAATTAAATGTTTATATGTCACTTCAATAAACCTTCTATC ATTTGCAAAGCTATGTTTCTTGGCGTCAGTTTGTTTGCGATTTCTTAAAA CGATCGATTAACCTCTATGTCCGTCTTTCATAAGTATGTTGCGATTGATG TTGGATGGAAGCAGGCACTTTGCATCTTTTTGTGACGGTCGGATGAATTA AACGCTTTCACGGGCTGAGAAACTCTCATTGTGACGTTCACAGAGAGTGT CAAATAGGTTAAGCCTCGTCATTTGGCACAATGTCCCATCAAAAAGTTTT GATTGATTTTGCAGACGAAATTCTCCAATAAATAGCGCATGCTGGTTATG TTTTCCATCATTTTCTTTTTAAAATATTGGATTCTGATTGCTTAATCTCA TCAAAAAGACTTCATATGGCGCTCTCTTTCCGAAAGAGAAGAAGAGGTTG AAGAAGAAGAGTTTGCTCTTTCAAAACTCCGTCCTCGCTCCTTTATAACC ATTTCCAACTATTGCTTTTGAAATAATTAAGGAGTTTTTAAAGAGTTGTA TAATGGAAAAAGAAGGGCTTAAAAAGCTGAAACGAATAGTTTACGACTAG TTGCTTTTATTTCTGCTGATTGAGAAGTAAAGAAGTCATTTTCTGGGTGA AACATGAAAGGTTGTTTAGGCTAGGCTCTTAATTCGAATATAGATTTATG GAAACTGGAATTCCTTTCTTTCTCAAAACGGAAATGAAATTAGCATTTGT TGATGATTTGTGTTTTCGATTAACTGGATTGGATTGATTGGATGAAACCA TAAATTTGATGATATAAAACATTAACGACGATTACGTAACTCCTTTTCGC AGCTTTAATTGCATCCGGCGTTTGATTTTAGCACAGTGACAAATTTTATG TAGTGTGCAATATATTGGTTGGTATTATCAGTACATTTGATAAGCTGCTT CTGCTCATTAACCACCTTCAAACAATTATTCTTCCTTATTCTCTTCGTTT CGTCATTTTCCTGTTTTCGACAAAACACGTGTTTATTTTCGACCATATTA TTGCGAGGATGTTTTCGCGTGAAGCGGTGAAGAAGAAGGAGGATCAAGGG AAGATGTCCTCTGCACTTGCATTTTTTGTAGACGGGATATGTCCTTTTCA TCACTTGTACTCGGTATCTTGAATTTTGCGAATGCTTTTCAAATACTTTT TAGAGTAATTTTTAAAGGGAGATAAAATATGCTTTTGCTGTAAAATCGGG TTTTGTTTTGTTGTTGCCTTGACAACAATCATTCCATCAAAATGGCTACG GCTTATCCCCCTTCCTGGTGCAAAAAAGCGGCGCCAATAATCCCTCTTCT ATCTCTATTTAATTAATCCAACATTTTCATTACTTTTTCAAAAGAAGACT TAATTTGTCTTTTCCTTCTCACTCTTTTAATTTGTTATTTCGGGAGATGG ATATTATATGTTCTTCCTTTGCAAGCTTCAAAACATCAGCACATGATATT GCTGCTAATGTCTTTGTTTCGCACCGGCGTAGGAAACTTACTTTTGATCA ATTAAGAAAGACAATAGAATGTAAGAATTGATCTCTTAATGGCTTTGCGT CTCATCAGCCAAAATATTACTTCACTAATTGTCTAATCTTTATCACTTGA TGATTTCAACTGGCTTGTGTGTTCTTTAATAGATGTCCTTATGGAAGTTG TTTGCGGAGAGTCAACGGAGTTAGAAGTACTTTAGTAAAGTCAATGTTTA CACATTATGTAATGTGGCGAGAACGTCCTTCTTTAATTTTAGCGAATGAT ATCATGGGAATTTGCGACCGTTATTTTTTTGTGTGTTTTTGTGATGAGTT GTACATCATTTTTGGTCTTTCGTGTTTAAGCGTCACTGAGGGGTAATGAA AGTTCACTTTCAGATCTTTTGATACAGAAGGGGGGAACATTCTGGTTGGG CGTTTGATTGTTTTGTTTGAGACATGGATTAAATGGGAATGGAAGGGAAT TCAGCTGCTTCGTTGAGTTTTCACGTTTACACATCATCATAGAGAGACAC ATGCACCTTCTCATTTCATTTTCAACCTCAAAGAAAAGAAAACAGAAAGA AAGGGAATATTTCTCAATAATTATTTCTTCTCCAACATCTTCATATATTA CATCGTATTCATTTTTTCCAAAACATGTGTCTGTTTGTCTTCTCTATTTT TCTTCTTTCTTTCTTCTTCTTTCCATTTCTCGACTTGAACACTCTTCCCT CTCATCACAACGTTCAAGTGAAAGAGTGATCTGTTTCTTTCTCGACTGAA CAGCACAGCAAGACTNTGAACACTCTTCCCTCTCATCACAACACAACGTT CAAGTGAAAGAGTGATCTGTTTCTTTCTCGACTGAACAACACAGCAAGAC TCTCACGATGTGTTCCGAAGCACCCTCAAACTACCGAAGACGTCGTTTTC AAATGTGCTTCTGCTTAGTGTAAGTCTTTACTTCCCTTTTCAACCTTTTT TTCCTTTCTTTCTGTTTTCATGCAGGGCTTTAGAGGTGGTGAATTTCCTC TGTTTTCATCGCGGAAATCTAGTTTCTTTTTCTGATTTTGAACACCCAAA AGATAATGGAGGAAGGGTGATTTCCACCATCGGTACTTTCCGACTGATGT TGTTGTGTGGGCTTCTCTTGAGTTCAGTGGGTAGTTCATCCTATGGAAAG CAATAGGAACAAAATACAACAAGTCAATGATAGAAATTTTAATTGACTTA TTCACATGGTTAGGTGAACTTTCTTTTTGTGATGAGTACTTTTATAAAAA GAGAAAGTCGAAGCTTTATTAAACTGTCTTGATCCTGTATTATAATGTTT ATTTTGAACATGAGACAAAGAGAAGTGTATGAATCATGCGAGAAGTTAGT GACATCTCTTCAATTATAAATAACATTCTTACTTCAAAGCATTCACACCA CACTTCTATCGAAATTCATACACTGTATTTAAAACAAGTTGAATGTTGCA TTCTGTAACTTCGCAATGAAGAAGAAAATTTGCTGTTGATTTTCCTTTTA TGGTGTTTGTATGTGTTGAATGATTGGTTTCTGCTTTGACGTGCTTCCAT CTCTGACTGAGAATCAATGTCTCATTTCATTCAAATGACATACTTTGCAC TCACACAAGTCTTCTAACTGCTTTTACTGTGTATTATATTTATTAGTTGC AAAAAATTAAAAACAAAGGGATCATTTTTGAAGATATGCGGATGTACGAC TTGGTGGACGAGAACAATGTGTTGTTTGACAAGCAAACCATCAAACGACA CAATAGTCGTGAACTGAACAACAATGAACCCGCTCTTCTCCGAAGAACTG TTTCTTTTTCCAACACCATAAGGTGTAAATGTTCAAAACTCTTAACTTTA ACACCCCATCTTCACCGTAGAGGGCAGCAAGACAAGGACAGTATGGGTGT GTCCCTCATGTCCACCAACTATCAGAGGAATGGGGCGAGCAGGTTGAAGA AGAAATTCTCAGGACCAGATATTCTCACTGAGCGACGAAAAAGTCTGAAA GGAATGACGAGGTAAGTGTTTTCTCTTTTTTCTAATTTTTAGATCATGGC CGTTTGTTTATTTTTTCGAGTTTGAGCGAAACTGTTTTGTCTGAACGAGA TATGTCACACTCTGAAGGGTTTCCGTCAATAGTCAATAGACTGACGGGTT TTCGGGACTTTTAAAATAATGATATTTTCCAAACAATCAGCCTGCATTAA CTATATATGATGATGTCATCATTAGGTAATGTTAAAATGCATAATTTATT ACCGACGGCCCGAACTGAGTGATAGGAAGATAATAAACGCAATAACAAAT ATAGAAATCGTTTTATCTTTACATCGAACATGCAATTTCACAAACATTCT TCTGATAAGAGAGGTAGCAAGCCATGTTTCAAGATAAGGCCTTTTGTTTC GCATTTTTAATAAGCATTTGAACACCCCTCGACGTGATGTATCGCTTGAT TAATGATACCGTTGTAAATATAAAAGCCTGTCAAAGTGTCATTCTTCATA ATATGTTGTTTTCATAATGTATTTTCGTTTGTTTGTCAGACCTGTCTTCA TCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGCATCGGATAGTACCTTT CGTTTTGCCGAAGAATTTGAGGTATGATGTTACCCTTTCACCACCACTTT CACAAGTTTGTGTCAAAAATGACAAACGTGAACTTTTGGAAATTAACCTT TACTTATATCTTCCCTTTCATTAATATTTGTAATAACCAAACAAGTTGAC CATTTACACGCCATAATTTCTGTACAACATTTTTTTGGATGTTATTCAAA ATGGGACGGAACGTCTAATTAATGATCATTAAGTCTTTTTAAGCCATCCT TAATATTACACAATTTCTTCTAATTATAACTTTCTTAATGTTTATCTTTC AGTCTATACGGGATGTCGGGAANATGTTTCAATCTTTAAAGCATTAAAAG CTTTATAAATCTTTAAAGCATTAAAAGCTTTATAAGTGCATGTCATGACC TTTCAGTGGGGGCATTTAGTGAAAGCTATGACTAGTTTAGATTTTAGATC ATGGCCGTTTGTTTATTTTTTCGAGTTTGAGCGAAACTGTTTTGTCTGAA CGAGATATGTCACATTCATTCTGAAGGGTTTCCGTCAATAGTCAATAGAC TGACGGGTTTGCGGGACTTTTAAAATAATGATATTTTCCAAACAATCAGC CTGTATTAACTATATATGATGATGTCATCATTAGGTAATGTTAAAATGCA TAATTTATTACCGACGGCCCGAAACTGAGTGATAGGAAGATAATAAACGC AATAACAAATATAGGCATCGTTTTATCTTTACATCGAACATGCAATTTCA CAAACATTCTTCTGATAAGAGAGGTAGCAAGCCATGTTTCAAGATAAGGC CTTTTGTTTCGCATTTTTAATAAGCATTTGAACACCCCTCGACGTGTGTA TCGCTTGATTAATGATACCGTTGTAAATATAAAAGCCTGTCAAAGTGTCA TTCTTCATATGCTCTTATTTTCATAATGTATTTTCGTTTGTTTGTCAGAC CTGTCTTCATCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGCATCGGAT AGTACCTTTCGTTTTGCCGAAGAATTTGAGGTATGATGTTACCCTTTCAC CACCACTTTCACAAGTTTGTGTCAAAAATGACAAACGTGAACTTTTGGAA ATTAACCTTTACTTATATCTTCCCTTTCATTAATATTTGTAATAACCAAA CAAGTTGACCATTTACACGCCATAATTTCTGTACAACATTTTTTTGGATG TTATTCAAAATGGGACGGAACGTCTAATTAATGATCATTAAGTCTTTTTA AGCCATCCTTAATATTACACAATTTCTTCTAATTATAACTTTCTTAATGT TTATCTTTCAGTCTATACGGGATGTCGGGAAATTTGAGAGGCATGAAGTT GCTGACATGGCAGAAAATAACGGCAAAAACCGATACGTCAACGTCTTACC ATGTAAGTCAAGTTTCGTTTTAGGAAAATTTTTGGCTCTGAATTGAATTT ATGATTCTTTCCTTAAAGAGAGATTTTTAGAAATGTAGAAATTTTTTCTT GGTATTTCCTGTGATGTGACCACCATGCAGTCTTTATAGAATTTCTCCTT ATTAATCATCTGTATTTTGGTTTACCAGACGATTATACGCGAGTGAAACT ATCGAGTATAGACGACGAACCTGGTTCGGACTATATCAACGCTAATTATA TTCACGTGAGTTGTTGTGCATTCATCAATTTTAGCTTTTTGGATTATTAT TTTTTCAAGATAATTTTTTAACTTGCCATACCGGATCTGTTTTACAGCGG AAACAAATCAGACTTTAATACGGTTAGAATTTCGTCTTTGTAGGGTTACA AGCAACCACGAGCATACATAGCCACACAAGGACCCCTCCCAAGTACCACA GACCACTTCTGGCAGATGGTCTGGGAACAAAAATCTCGAATCATTGTCAT GGTTACGCAATGCAATGAGAAGAATCGTGTAAAATGTCATCAATATTGGC CTGCATCAGGTTCGACGCGATACGGAGAAATCGAAGTAACGCTTAAGCAC GAAACAATATATCCAGAATGGACCGAACGGGAATTTCTAATGACATTCGA GGTGAGGAAAACTTCCCACGTTTTCTTGAACAGTTGATATTGGGTTGTCT GGTTCTCACTCTTTTAACGACGTTTATGGAGAAATATTCGTCTCCTATTA ATAACATGAATAAAAACAATATCTTTTATTATTTTAAAGGGCGAATCTCG ATTACTCAGACATTTTCAATACACAGCATGGCCTGACCACGGCGTACCTC GCTCATCTAAAGAAATGTTACAGTTCGTGACGACCGTTCGGTTTCATCAA CGGCCCGATGACGGCCCTGTCATCTGTCATTGCTCGTAAGTTCTCTCCTC TTCACTTGCAGTAAATGACGTCATTTGTTTTCTTTCGGTTTTTAGAACAG CTCGGTAACGTAAAGGGTGAAGGGGTTGTATTTTTAGATTGGGAAATTAA ACTTATTAAAAGAAGTTCTTAAAAATTTATCTTGTTCGTGCCTCCTTAAC TTTTCATGCCAACCTATCTTAATTCGGAGCAATTTTCCTTAATGATAATT TCCTACACTTTTCTTGAATAGTTTCCTCATTAAATTTAATCAGAAAATTC ATGACAATCGGTTAAACCAGCTTAACGCAACCCATTAGATAAATTGCACA ATTTCGTGGTGGTGAATAACCAAGGGTAGCCATTCTTTCACACAACCAAT ATTTACTGCGACGCTGTTAAACGCTTTTTTTCGTAATTTCTACACACACC AAACCTCAAAAAACCCCTGACATACTTAACTTTATACTAGTTCTTTTACG GTCTGTAAGTGTTCAAAATCTCATTAATCAAGCCTTGTTGTAAACGATTG TAGGGACATAAGATGCCATAACTTACTGCATCCTGTTATGACATAATATT AAGTAACAATTAATTATTTTGTTTGTGTTTTAGGGCGGGAGTTGGGCGCA CAGGAACTTACTTGTGTGTTGATATTCTGGTCAATAAACTACAGACCGAA AACAATGTAGATGTTTATGGTGTAGTGTGTTTAATGAGGACTCAACGATG CTCCATGGTGCAGACTGAGGTAATGAAATACAGACCACATTTTTAAGCAT CTTCAAAACCTAATCTTTATTCAACATTTTTACAAACCTACTGTTTTCTA GAATTGTACTCTATACTAAAATATAGGATTGCTTTTACTTTCAGGACCAA TACATCTTCATTCACCGAGTCATATTGGACTATTTGAAACAACGTGACGA AAAGCAACAAATCTTTTCCGGATATTCGACCTTAGAAATGCGAAGGAAAA GTAAAAGTGAATCCAATCCTGTCGAACCTGCGGCTGAAGGTACGTTTCAA GTTTGTTTTGATAAGTAATCCTCAAGAACTGTCTTCTCAGAACGCAAAAA CCGTAGATCAAGAATAAACATAACGAATTCGAGAAAGAAACAAATCGTTT TTTGTTGGAACTTGATCAGACTTGTTTCATAATTCTGTCTTCTCAGAATG TAAAAACCATAGACCTCATCAGATTTGATATAAAAAAATCAATCAACAAA TAAACAATTTTCTAAGAAATCATAACGAACTCGTGAAAGAAACAAATCAT TTTTGTTGGCACTTGATCAAATTTGTTTCATAATCTGTATGTTATCATAT ACAATCAGGTTTTTTACTCAATTAAGTTCGCATTACAGATCGTCTGATCT TTCGGTGAATTACCGTGACGTCATAATAGATCACGCTGGTCTTTGATGGG AATCAGTATTAGGAAATCGCAGTTTACAAATTTATCAAGAAATTAAGAAA AGCAATTCGATTATAAAATCTGTGATATCTTATCCCCCTGATTTCTCCAT ATAAATGCAACATTGTTTGGTGAGAATTCAGCCTTTGTTCATCCCTTAAT TATTTTTTCTCTCATCTTCAGCATTATTGAAAGAAGAAGAAAAAGAAGAC GAGGAAGATGAAAATCTGGATAATGATGATGATGAAACGAAATCTGACGA TTTTCTTTCCGAAGAATTCGAGAACAGCGATTTAGAAACACCTCCTGTAT AATACGCATACTACCTCTTCATATTTGTAGACTTTTTTTTGACTTTATGT TGTGTAGAAAGAAAATGGATGCCCTTTTATCGGGTAGGATTTCATCTTAA CAAGTGATGATCAAATATCACTCACCATGCATCTCCCTCATACTTCGTTC TTTAAAACATTTTTATTGTAATTTCTTTTTAAATGGAAATTGTAAATAGG TACACTAGAAATTTAATTTTTATTTTGAAATTTTATATAAATAGCGAGAG ATAATATTAGTCTACTTTATTGTTATATTCTTCTTGGTTTACTTTCGTTG AATTCTTTCAAGATACCGATTGGCATAAGAAGAAGCTTTCTTTTTTGGGG GCTAAAGAAAACAAGATGATAATATAATAATTTTGTGTTCTTATTTATTA TTGTAAATAATATTCTTCACATTGAAAGTGAGGTAAAGAAATATCTTAAA ACAAACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000611XLOC_000611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001088-exon-sc0000007-1575043694:73129..73200TCONS_00001088-exon-sc0000007-1575043694:73129..73200Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:72510..72542TCONS_00001088-exon-sc0000007-1575043694:72510..72542Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:72057..72193TCONS_00001088-exon-sc0000007-1575043694:72057..72193Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:70900..71267TCONS_00001088-exon-sc0000007-1575043694:70900..71267Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:70487..70709TCONS_00001088-exon-sc0000007-1575043694:70487..70709Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:69663..69742TCONS_00001088-exon-sc0000007-1575043694:69663..69742Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:69103..69241TCONS_00001088-exon-sc0000007-1575043694:69103..69241Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:65140..65280TCONS_00001088-exon-sc0000007-1575043694:65140..65280Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:64530..64611TCONS_00001088-exon-sc0000007-1575043694:64530..64611Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:63149..63239TCONS_00001088-exon-sc0000007-1575043694:63149..63239Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:62896..62972TCONS_00001088-exon-sc0000007-1575043694:62896..62972Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:62500..62757TCONS_00001088-exon-sc0000007-1575043694:62500..62757Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:62216..62361TCONS_00001088-exon-sc0000007-1575043694:62216..62361Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:61482..61617TCONS_00001088-exon-sc0000007-1575043694:61482..61617Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:61212..61356TCONS_00001088-exon-sc0000007-1575043694:61212..61356Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1575043694:60040..60629TCONS_00001088-exon-sc0000007-1575043694:60040..60629Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:73129..73200TCONS_00001088-exon-sc0000007-1510915933:73129..73200Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:72510..72542TCONS_00001088-exon-sc0000007-1510915933:72510..72542Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:72057..72193TCONS_00001088-exon-sc0000007-1510915933:72057..72193Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:70900..71267TCONS_00001088-exon-sc0000007-1510915933:70900..71267Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:70487..70709TCONS_00001088-exon-sc0000007-1510915933:70487..70709Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:69663..69742TCONS_00001088-exon-sc0000007-1510915933:69663..69742Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:69103..69241TCONS_00001088-exon-sc0000007-1510915933:69103..69241Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:65140..65280TCONS_00001088-exon-sc0000007-1510915933:65140..65280Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:64530..64611TCONS_00001088-exon-sc0000007-1510915933:64530..64611Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:63149..63239TCONS_00001088-exon-sc0000007-1510915933:63149..63239Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:62896..62972TCONS_00001088-exon-sc0000007-1510915933:62896..62972Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:62500..62757TCONS_00001088-exon-sc0000007-1510915933:62500..62757Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:62216..62361TCONS_00001088-exon-sc0000007-1510915933:62216..62361Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:61482..61617TCONS_00001088-exon-sc0000007-1510915933:61482..61617Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:61212..61356TCONS_00001088-exon-sc0000007-1510915933:61212..61356Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1510915933:60040..60629TCONS_00001088-exon-sc0000007-1510915933:60040..60629Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:73129..73200TCONS_00001088-exon-sc0000007-1491911889:73129..73200Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:72510..72542TCONS_00001088-exon-sc0000007-1491911889:72510..72542Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:72057..72193TCONS_00001088-exon-sc0000007-1491911889:72057..72193Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:70900..71267TCONS_00001088-exon-sc0000007-1491911889:70900..71267Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:70487..70709TCONS_00001088-exon-sc0000007-1491911889:70487..70709Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:69663..69742TCONS_00001088-exon-sc0000007-1491911889:69663..69742Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:69103..69241TCONS_00001088-exon-sc0000007-1491911889:69103..69241Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:65140..65280TCONS_00001088-exon-sc0000007-1491911889:65140..65280Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:64530..64611TCONS_00001088-exon-sc0000007-1491911889:64530..64611Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:63149..63239TCONS_00001088-exon-sc0000007-1491911889:63149..63239Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:62896..62972TCONS_00001088-exon-sc0000007-1491911889:62896..62972Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:62500..62757TCONS_00001088-exon-sc0000007-1491911889:62500..62757Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:62216..62361TCONS_00001088-exon-sc0000007-1491911889:62216..62361Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:61482..61617TCONS_00001088-exon-sc0000007-1491911889:61482..61617Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:61212..61356TCONS_00001088-exon-sc0000007-1491911889:61212..61356Clytia hemisphaericaexon
TCONS_00001088-exon-sc0000007-1491911889:60040..60629TCONS_00001088-exon-sc0000007-1491911889:60040..60629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:60040..73200 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.36682 1.84503 0.00208655 0.826207 0.185359 0.368769 0.145595 0.224423 1.51942 1.7861 8.80331 6.24352 10.3077 5.09252 2.24813 3.46764 16.1498 11.6901 12.7567 16.5098 8.63574 6.35668 5.13881 6.75572 4.49863 1.56665 0.042146 0.0270025 4.77788 4.03475
Blast
BLAST of TCONS_00001088 vs. Swiss-Prot (Human)
Match: PTPRB (Receptor-type tyrosine-protein phosphatase beta OS=Homo sapiens GN=PTPRB PE=1 SV=3)

HSP 1 Score: 315.079 bits (806), Expect = 1.400e-89
Identity = 182/456 (39.91%), Postives = 261/456 (57.24%), Query Frame = 1
Query:  730 SAAKFLNIKLG-----ISKDCTKVDQEICNGPLTPSTNYSIQLEVF----------FTNGTSLTTPSSKPWSTLQKAVIVPQEGVRSSXXXXXXXXXXXXXXXXXXXXXXXXCRKKRSRKYLRGQQDKDSMGVSLMSTNYQRNGASRLKKKFSGPDILTERRKSLKGMTRPVFIRDFRAWVERSASDSTFRFAEEFESIRDVGKFERHEVADMAENNGKNRYVNVLPYDYTRVKLSSIDDEPGSDYINANYIHGYKQPRAYIATQGPLPSTTDHFWQMVWEQKSRIIVMVTQCNEKNRVKCHQYWPAS-GSTRYGEIEVTLKHETIYPEWTEREFLMTFEGE---SRLLRHFQYTAWPDHGVPRSSKEMLQFVTTVR--FHQRPDDGPVICHCSAGVGRTGTYLCVDILVNKLQTENNVDVYGVVCLMRTQRCSMVQTEDQYIFIHRVILDYLKQR 2034
            S +K  NIKLG     +   C    Q+ C+GPL P T Y I +  F          FT      T  S P +T  + +    EGV + + +I + V +V  +          CR+K S       +++ S  +S+           R  +  S    L   +K  +  + P+ I  F     +  +DS +  ++E+E ++DVG+ +  ++A + EN GKNRY N+LPYD TRVKLS++DD+P SDYINA+YI G    R YI TQGPLP T D FW+MVWEQ    IVMVTQC EK RVKC  YWPA   S  YG++ + +  E++ PEWT REF +  E +    RL+RHF YT WPDHGVP +++ ++QFV TVR   ++ P  GP + HCSAGVGRTGT++ +D ++ +L ++++VD+YG V  +R  R  MVQTE QY+++H+ + D L+ R
Sbjct: 1539 SNSKSFNIKLGAEMESLGGKCDPTQQKFCDGPLKPHTAYRISIRAFTQLFDEDLKEFTKPLYSDTFFSLPITTESEPLFGAIEGVSAGLFLIGMLVAVVALLI---------CRQKVSHG-----RERPSARLSI-----------RRDRPLSVH--LNLGQKGNRKTSCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRAR 1967          
The following BLAST results are available for this feature:
BLAST of TCONS_00001088 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTPRB1.400e-8939.91Receptor-type tyrosine-protein phosphatase beta OS... [more]
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