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TCONS_00001086 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001086
Unique NameTCONS_00001086
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2888

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001086 ID=TCONS_00001086|Name=TCONS_00001086|organism=Clytia hemisphaerica|type=transcript|length=2888bp
AATGATGGACGCCAAAGGAATAACTCGTCAAGTTTAAGATGGTGATGCTT
CTGCTTGCCATTTGGTTTTATGGTATAACAGCAACAACGATACAGAATGA
ATTTTCATCCACTTTTACATCCATCGAACTTGCTTCGATTTCTCCATCCG
CCAGTTCGATGAAAACCAACACCCTAAATGAACCTTCCCGAACACCACCC
ACTCAAAGAAGCTACTCGTCATATGAAGCTTCTTCGCAACCATCAAACGT
TGACAGTTTTTTAACATTACAAACGACCAACTTTGACGCTTCTTCAATCT
TACAACAATCAACAACATCAGAAAAGACAGCTTTAACGACTGAATCTGTG
GTAACCTCTACCCTCCAGTTATCCTCCCAACCCTTCCATAGAtcctttga
tattttttcaagctCCCTGGAGCACACGTCAACTGTTGCTACAAATTATT
TGGTGACGCCCAACAATCTCGCAACATCGCAGTCAGACTCGCCAACATCC
GCAAAAGCTATGACCACTGATTCAAAGAGTTCGTCTCCTAAGAACATTCA
ACCAAGCACATCTACGAGAGAAATAGTCTCATTGACAACCTCCATTATAT
CCCTACCACCATCAAGAAAACCCTCCACTACTCAACAACCAACCACAACC
ACAACGCAACCACCTTTGCCAGCATTTAAGCAAAATATTGATGATACCAG
TATATTTGTTTTGCTACCTTTGTCTTATCCTGTCGACAGCTGGGAAGAGA
TCACTGTTTATGTCGTCATTCCTTCACTTGGTTACAAGTCAACGGGCTCA
TGGTACAGAATTTTcatcaagaaagaaaaacacgACCGTTACCCTGCACT
TGTCATGAAGCCCAAGCAACTTTCGAACGATCCACGTCGAAAAAGAAGAA
GTGCAGCCAAATTCTTGAACATCAAACTTGGCATCAGTAAAGACTGTACT
AAAGTCGATCAAGAGATTTGTAATGGTCCTCTAACTCCCTCAACTAACTA
CAGTATTCAGTTGGAAGTCTTCTTCACCAATGGAACATCTTTGACAACCC
CCTCCTCAAAACCCTGGTCTACTTTACAAAAAGcGGTGATCGTGCCACAA
GAAGGTGTTCGTTCATCTGTCGTCATCATCATCCTCACCGTCCTTCTCGT
CTTCTTCATCTTTCTCACCATCATCATCACAATCATCGTCTGCCGTAAGA
AACGATCACGAAAATATCTCAGAGGGCAGCAAGACAAGGACAGTATGGGT
GTGTCCCTCATGTCCACCAACTATCAGAGGAATGGGGCGAGCAGGTTGAA
GAAGAAATTCTCAGGACCAGATATTCTCACTGAGcgacgaaaaagtctga
aaggAATGACGAGACCTGTCTTCATCCGAGATTTTCGTGCATGGGTTGAA
AGAAGTGCATCGGATAGTACCTTTCGTTTTGCCGAAGAATTTGAGTCTAT
ACGGGATGTCGGGAAATTTGAGAGGCATGAAGTTGCTGACATGGCAGAAA
ATAACGGCAAAAACCGATACGTCAACGTCTTACCATACGATTATACGCGA
GTGAAACTATCGAGTATAGACGACGAACCTGGTTCGGACTATATCAACGC
TAATTATATTCACGGTTACAAGCAACCACGAGCATACATAGCCACACAAG
GACCCCTCCCAAGTACCACAGACCACTTCTGGCAGATGGTCTGGGAACAA
AAATCTCGAATCATTGTCATGGTTACGCAATGCAATGAGAAGAATCGTGT
AAAATGTCATCAATATTGGCCTGCATCAGGTTCGACGCGATACGGAGAAA
TCGAAGTAACGCTTAAGCACGAAACAATATATCCAGAATGGACCGAACGG
GAATTTCTAATGACATTCGAGggCGAATCTCGATTACTCAGACATTTTCA
ATACACAGCATGGCCTGACCACGGCGTACCTCGCTCATCTAAAGAAATGT
TACAGTTCGTGACGACCGTTCGGTTTCATCAACGGCCCGATGACGGCCCT
GTCATCTGTCATTGCTCgGCGGGAGTTGGGCGCACAGGAACTTACTTGTG
TGTTGATATTCTGGTCAATAAACTACAGACCGAAAACAATGTAGATGTTT
ATGGTGTAGTGTGTTTAATGAGGACTCAACGATGCTCCATGGTGCAGACT
GAGGACCAATACATCTTCATTCACCGAGTCATATTGGACTATTTGAAACA
ACGTGACGAAAAGCAACAAATCTTTTCCGGATATTCGACCTTAGAAATGC
GAAGGAAAAGTAAAAGTGAATCCAATCCTGTCGAACCTGCGGCTGAAGCA
TTattgaaagaagaagaaaaagaagacgaGGAAGATGAAAATCTggataa
tgatgatgatgaaacgAAATCTGACGATTTTCTTTCCGAAGAATTCGAGA
ACAGCGATTTAGAAACACCTCCTGTATAATACGCATACTACCTCTTCATA
TTTgtagacttttttttgactttatgtTGTGTAGAAAGAAAATGGATGCC
CTTTTATCGGGTAGGATTTCATCTTAACAAGTGATGATCAAATATCACTC
ACCATGCATCTCCCTCATACTTCGttctttaaaacatttttattgtaatt
tctttttaaatggaAATTGTAAATAGGTACactagaaatttaatttttat
tttgaaattttatataaaTAGCGAGAGATAATATTAGTCTACTTTATTGT
TATATTCTTCTTGGTTTACTTTCGTTGAATTCTTTCAAGATACCGATTGG
CATAAGAAGAAGCTTTCTTTTTTGGGGGCTAAAGAAAACAAGATGATAAT
ATAATAATTTTGTGTTCTTATTTATTATTGTAAATAATATTCTTCACATT
GAAAGTGAGGTAAAGAAATAtcttaaaacaaacaaaag
Run BLAST on NCBI

transcript from alignment at sc0000007:60040..73166-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001086 ID=TCONS_00001086|Name=TCONS_00001086|organism=Clytia hemisphaerica|type=transcript|length=13127bp|location=Sequence derived from alignment at sc0000007:60040..73166- (Clytia hemisphaerica)
AATGATGGACGCCAAAGGAATAACTCGTCAAGTTTAAGGTTGGTTGATTA TCTTTGAAAAGTAGATTTGTCTGTGGTTCTTTAGAATCATTTTCTTTATG GATAATTCAATAATATTTTAGCTACATGCGTGACTTGATTAGTATTCATC CGCCCCTTGAGAGCTTGTTATAAATGGATGAAAATGATAGTTAATCAAAA AATCACTATCAGACATTTTGAGTAGCAATTAGCAATTTGTGTTGAATGAA ATGAGATGAGGGTCATTTAGTTCGGTAATTGCTAGTTATTCGCTTCCTAT ATTTGATTGGAAGTTGAGAAAAGAGATCTGTAATGTGTGTTTCTATGAAG TTTATTTCTACTTGAGATATGATTTGGATGACTCTTTGTGAAAACGATGT ATCATCATCATGATCTTTGAGAAGGTTGTCGTAATATCAAAGTAGTGTTA TCCTCTTCATTACGTTTTATAGAGTTCATCTAATACTTATTAAGCGTATA ATATATATTCATTTCACAAAAAGCTGTAAGTCTTATCATTCATATCGCTT TCATTTTTTATATGTTGTATGAACAGTTAAGAGAGGGGTGTCGTATACTG AACTTTTTTGGTTTTCTTTCTTAGATGGTGATGCTTCTGCTTGCCATTTG GTTTTATGTAAGTTTTCGTTTCTTTTTCATTCTTCGCATTCTCAGAATAT ATTTTTGTAATTCTTCAGGAAGTCTGGATTAGTTAAAATAAAATGTCTAC GTGATGGTATTCTATAGTATGTCTCGAGACACGCCCTTTTATATAAGATC CTGACCCGTGAATAGCTACTTATATTTTGGGCAACGGGTTGGTATGATAT GTGCAGCGAAAAATAGTAAAACGATAATTGTTCCCGTTTCGTTGAACCAG GAAATTTAGAACAAGGAAATTTAATGATCCATCACTTCTTGGAATGAATT ACTGATTTTTTCGTTTCCTTCAGGGTATAACAGCAACAACGATACAGAAT GAATTTTCATCCACTTTTACATCCATCGAACTTGCTTCGATTTCTCCATC CGCCAGTTCGATGAAAACCAACACCCTAAATGAACCTTCCCGAACACCAC CCACTCAAAGGTATAGCTCCTCAATGAACATCATTGCTGAAAGACTGGAA ACAAGTAACCTATCAATAGACATGACTGTACGAACTTTTATATCAACAAC TAAATTGATAATGGTACCTGACTTTTCTACAGACATGAACGTTAAAGAAT CACCAACAACATCTATAGACTTTTCAACATCACAACTCGTGACTGACTTA CAAACTTCTATATCAAGTGATCGTCAAACAAACTCATCCACAGACCTTTC TATAACAGCACTGGACATGTTGTCTTCTATGAAGACCTCACAATTTCAAA CAGAGTTTTCCACGCACTTTCTTGACAGCTCTTCGCCATTTTCTTCTTCA TCTTCTCCCATTGAAAAGTCTCTTTACTCTTCTTCGATTGCTTTGCCGTC CTCACTTTCATCTTCCTACCTCTTATTTTCTACCTCTGTTAGTTCCCAGT TCTCTAGCTTTTCTTCAAGCATTTCTCCCAGTGTACCTTACAGTGTTTCT GCCAGCACCTCCTCGTCAACCATTATCAGATCAGCTGAAGTGGAACCTTC TTCAAACATCATTTCAACTTTACGGGCTTTCTCCACTGTTGACAGAAGCT ACTCGTCATATGAAGCTTCTTCGCAACCATCAAACGTTGACAGTTTTTTA ACATTACAAACGACCAACTTTGACGCTTCTTCAATCTTACAACAATCAAC AACATCAGAAAAGACAGCTTTAACGACTGAATCTGTGGTAACCTCTACCC TCCAGTTATCCTCCCAACCCTTCCATAGATCCTTTGATATTTTTTCAAGC TCCCTGGAGCACACGTCAACTGTTGCTACAAATTATTTGGTGACGCCCAA CAATCTCGCAACATCGCAGTCAGACTCGCCAACATCCGCAAAAGCTATGA CCACTGATTCAAAGAGTTCGTCTCCTAAGAACATTCAACCAAGCACATCT ACGAGAGAAATAGTCTCATTGACAACCTCCATTATATCCCTACCACCATC AAGAAAACCCTCCACTACTCAACAACCAACCACAACCACAACGCAACCAC CTTTGCCAGCATTTAAGCAAAATATTGATGATACCAGTATATTTGTTTTG CTACCTTTGTCTTATCCTGTCGACAGCTGGGAAGAGATCACTGTTTATGT CGTCATTCCTTCACTTGGTAAGTCACTAATTCTTTTTGTAAATTTTGAGA TTTTTATTTCTTTTTGCCACATTTTCTTTCATGTATTCAATTTCGTAATT TCGTATTTAAGAAAAATTTAAGCATGCAAAAAAGTAGTATCTACGAAAAT GTAAAAGGTAACAGTCCTAGTGTCCCTACGGCTATAAAGATACATATTTT TATACAGGTTACAAGTCAACGGGCTCATGGTACAGAATTTTCATCAAGAA AGAAAAACACGACCGTTACCCTGCACTTGTCATGAAGCCCAAGCAACTTT CGAACGATCCACGTCGAAAAAGAAGAAGTGCAGCCAAATTCTTGAACATC AAACTTGGCATCAGTAAAGACTGTACTAAAGTCGATCAAGAGATTTGTAA TGGTCCTCTAACTCCCTCAACTAACTACAGGTTTTACTTAAGTCTGTTCC AAAAAACTCCGTACTTTACACATTGCTCTCACGGGAAAAAAATATAACTA AAAGTAATTAATACCTTTTTGAAAAGATAATTTTAGCAGCTCGATGTGAG CTTTAAAGAATTTTCTAAGGATTTGAAAATGAAGATGAAAAGTGAAAGAA AAAATGAAGATTTTTCTACTCGGTAATATCTTTTCTGAAACAGCGCTGAT TTCAAGTAAGTATTCAGTTTTTCTTTTTGGTAAAGAGTTATAGCCTCTTG TCCATTTCGATCGTTTCTAGCAATTTATGGCCTATTTTGACCTTTCTCGG AGGCTTGTGGTTTTCGATCGAAAAGTGATATAAAAGATCTTATAAAAAAT CTTTCTAAGGAGGTATTACTTTTAGCTATATCTTTTCACTATATCTTTTC ACCTAAAGAGGACTTTTAGACCAAACTTTACAAGAAGTCTTTTTTTGTTG AGAAATATTGCGTAATAATTTCAAGACTACTCCCTCTCAGGTTTTCATTT ATATTTTCGTCCAATGTATGAAAGACAACCCTCAAAGTTATATTTTCACT ATTTTGAACCCACATGAAGTGGTAAAAGAAGGGAGACACACCCATCCTGA AGATCTAATTCAATTTCACAATAAGTTGTTATTGACAAATAGAGACATGG GTATGATAAATATTCTCTTTGATCAAGTGCAGATGTTTTCGAAGATGTAT TAAACTTCTATTTTGTTCGTTTAGTATTCAGTTGGAAGTCTTCTTCACCA ATGGAACATCTTTGACAACCCCCTCCTCAAAACCCTGGTCTACTTTACAA AAAGGTTGGTAACTTTTTTTTTTATTTCCTCCTTTGCTAGTTTCTTCTCC AGTAATCTCGTATTCAGATATTACCTTGTTTTGTGATTGAGCTCTCCGAG TAAATGTTTGTACAACCCGGGACGAAGATATTATTTTTCCCTGTCAACTA ATGCCGTTGTCTAGGGAGGCGGTGACTTGTTTCGTGGGAGGTTTATCACT TACAAATCTGTGTTTTGGAAGAACCAAAACAATGTACGCAAGGTTTGATA TGAAGGCCTGCTCAAGATCAATAATGAACGGCTTTATGAAACTATTTTGT TAATATCACGAGAAGCCTTCAGTTAATTTTTGATTTTGATTTGATTTTTT TTANATGGCCAGTTCATTTTTTTTATTTCGATTCTTGAGGAGTGTGTTCT ATAAAATTTGATTTTTTTCTTCCAGCGGTGATCGTGCCACAAGAAGGTGT TCGTTCATCTGTCGTCATCATCATCCTCACCGTCCTTCTCGTCTTCTTCA TCTTTCTCACCATCATCATCACAATCATCGTCTGCCGTAAGAAACGATCA CGAAAATATCTCAGGTATGTATCTTACGTGTTTCAACCTCTTTTCGTCAT TTTTTTTTAGGCCCCTCCCAAGTGTTACCAACTATTCTTCGTTAATATTT TTTTAATGAATTATGAATTTTATGAGACAGTCCTTGAAACAATCGGTGTT CTTCACTGATCTGAAAGAAAAAAGCTTCCATTAGAGTATAGCAAAAAAAG GTCCTCCGATCCTTCCTACGAGCAGTTCATTTTGTACTACAACCAGGAAA TGGACTATATCCAGAATAATTTGAATTAAACAGGGAAATTATATAACAAT TAATGGACATCCTCTCCAAGGGTAGCAGTGCTTTTGCAGCTTGCCGTTAC TATATTCAATTTATAGACATACAGCTAACTGTGGTATTTTGTAGCAGGTT CTCTCTTTGAAATGTAGATTTTATATAAATTAAATGTTTATATGTCACTT CAATAAACCTTCTATCATTTGCAAAGCTATGTTTCTTGGCGTCAGTTTGT TTGCGATTTCTTAAAACGATCGATTAACCTCTATGTCCGTCTTTCATAAG TATGTTGCGATTGATGTTGGATGGAAGCAGGCACTTTGCATCTTTTTGTG ACGGTCGGATGAATTAAACGCTTTCACGGGCTGAGAAACTCTCATTGTGA CGTTCACAGAGAGTGTCAAATAGGTTAAGCCTCGTCATTTGGCACAATGT CCCATCAAAAAGTTTTGATTGATTTTGCAGACGAAATTCTCCAATAAATA GCGCATGCTGGTTATGTTTTCCATCATTTTCTTTTTAAAATATTGGATTC TGATTGCTTAATCTCATCAAAAAGACTTCATATGGCGCTCTCTTTCCGAA AGAGAAGAAGAGGTTGAAGAAGAAGAGTTTGCTCTTTCAAAACTCCGTCC TCGCTCCTTTATAACCATTTCCAACTATTGCTTTTGAAATAATTAAGGAG TTTTTAAAGAGTTGTATAATGGAAAAAGAAGGGCTTAAAAAGCTGAAACG AATAGTTTACGACTAGTTGCTTTTATTTCTGCTGATTGAGAAGTAAAGAA GTCATTTTCTGGGTGAAACATGAAAGGTTGTTTAGGCTAGGCTCTTAATT CGAATATAGATTTATGGAAACTGGAATTCCTTTCTTTCTCAAAACGGAAA TGAAATTAGCATTTGTTGATGATTTGTGTTTTCGATTAACTGGATTGGAT TGATTGGATGAAACCATAAATTTGATGATATAAAACATTAACGACGATTA CGTAACTCCTTTTCGCAGCTTTAATTGCATCCGGCGTTTGATTTTAGCAC AGTGACAAATTTTATGTAGTGTGCAATATATTGGTTGGTATTATCAGTAC ATTTGATAAGCTGCTTCTGCTCATTAACCACCTTCAAACAATTATTCTTC CTTATTCTCTTCGTTTCGTCATTTTCCTGTTTTCGACAAAACACGTGTTT ATTTTCGACCATATTATTGCGAGGATGTTTTCGCGTGAAGCGGTGAAGAA GAAGGAGGATCAAGGGAAGATGTCCTCTGCACTTGCATTTTTTGTAGACG GGATATGTCCTTTTCATCACTTGTACTCGGTATCTTGAATTTTGCGAATG CTTTTCAAATACTTTTTAGAGTAATTTTTAAAGGGAGATAAAATATGCTT TTGCTGTAAAATCGGGTTTTGTTTTGTTGTTGCCTTGACAACAATCATTC CATCAAAATGGCTACGGCTTATCCCCCTTCCTGGTGCAAAAAAGCGGCGC CAATAATCCCTCTTCTATCTCTATTTAATTAATCCAACATTTTCATTACT TTTTCAAAAGAAGACTTAATTTGTCTTTTCCTTCTCACTCTTTTAATTTG TTATTTCGGGAGATGGATATTATATGTTCTTCCTTTGCAAGCTTCAAAAC ATCAGCACATGATATTGCTGCTAATGTCTTTGTTTCGCACCGGCGTAGGA AACTTACTTTTGATCAATTAAGAAAGACAATAGAATGTAAGAATTGATCT CTTAATGGCTTTGCGTCTCATCAGCCAAAATATTACTTCACTAATTGTCT AATCTTTATCACTTGATGATTTCAACTGGCTTGTGTGTTCTTTAATAGAT GTCCTTATGGAAGTTGTTTGCGGAGAGTCAACGGAGTTAGAAGTACTTTA GTAAAGTCAATGTTTACACATTATGTAATGTGGCGAGAACGTCCTTCTTT AATTTTAGCGAATGATATCATGGGAATTTGCGACCGTTATTTTTTTGTGT GTTTTTGTGATGAGTTGTACATCATTTTTGGTCTTTCGTGTTTAAGCGTC ACTGAGGGGTAATGAAAGTTCACTTTCAGATCTTTTGATACAGAAGGGGG GAACATTCTGGTTGGGCGTTTGATTGTTTTGTTTGAGACATGGATTAAAT GGGAATGGAAGGGAATTCAGCTGCTTCGTTGAGTTTTCACGTTTACACAT CATCATAGAGAGACACATGCACCTTCTCATTTCATTTTCAACCTCAAAGA AAAGAAAACAGAAAGAAAGGGAATATTTCTCAATAATTATTTCTTCTCCA ACATCTTCATATATTACATCGTATTCATTTTTTCCAAAACATGTGTCTGT TTGTCTTCTCTATTTTTCTTCTTTCTTTCTTCTTCTTTCCATTTCTCGAC TTGAACACTCTTCCCTCTCATCACAACGTTCAAGTGAAAGAGTGATCTGT TTCTTTCTCGACTGAACAGCACAGCAAGACTNTGAACACTCTTCCCTCTC ATCACAACACAACGTTCAAGTGAAAGAGTGATCTGTTTCTTTCTCGACTG AACAACACAGCAAGACTCTCACGATGTGTTCCGAAGCACCCTCAAACTAC CGAAGACGTCGTTTTCAAATGTGCTTCTGCTTAGTGTAAGTCTTTACTTC CCTTTTCAACCTTTTTTTCCTTTCTTTCTGTTTTCATGCAGGGCTTTAGA GGTGGTGAATTTCCTCTGTTTTCATCGCGGAAATCTAGTTTCTTTTTCTG ATTTTGAACACCCAAAAGATAATGGAGGAAGGGTGATTTCCACCATCGGT ACTTTCCGACTGATGTTGTTGTGTGGGCTTCTCTTGAGTTCAGTGGGTAG TTCATCCTATGGAAAGCAATAGGAACAAAATACAACAAGTCAATGATAGA AATTTTAATTGACTTATTCACATGGTTAGGTGAACTTTCTTTTTGTGATG AGTACTTTTATAAAAAGAGAAAGTCGAAGCTTTATTAAACTGTCTTGATC CTGTATTATAATGTTTATTTTGAACATGAGACAAAGAGAAGTGTATGAAT CATGCGAGAAGTTAGTGACATCTCTTCAATTATAAATAACATTCTTACTT CAAAGCATTCACACCACACTTCTATCGAAATTCATACACTGTATTTAAAA CAAGTTGAATGTTGCATTCTGTAACTTCGCAATGAAGAAGAAAATTTGCT GTTGATTTTCCTTTTATGGTGTTTGTATGTGTTGAATGATTGGTTTCTGC TTTGACGTGCTTCCATCTCTGACTGAGAATCAATGTCTCATTTCATTCAA ATGACATACTTTGCACTCACACAAGTCTTCTAACTGCTTTTACTGTGTAT TATATTTATTAGTTGCAAAAAATTAAAAACAAAGGGATCATTTTTGAAGA TATGCGGATGTACGACTTGGTGGACGAGAACAATGTGTTGTTTGACAAGC AAACCATCAAACGACACAATAGTCGTGAACTGAACAACAATGAACCCGCT CTTCTCCGAAGAACTGTTTCTTTTTCCAACACCATAAGGTGTAAATGTTC AAAACTCTTAACTTTAACACCCCATCTTCACCGTAGAGGGCAGCAAGACA AGGACAGTATGGGTGTGTCCCTCATGTCCACCAACTATCAGAGGAATGGG GCGAGCAGGTTGAAGAAGAAATTCTCAGGACCAGATATTCTCACTGAGCG ACGAAAAAGTCTGAAAGGAATGACGAGGTAAGTGTTTTCTCTTTTTTCTA ATTTTTAGATCATGGCCGTTTGTTTATTTTTTCGAGTTTGAGCGAAACTG TTTTGTCTGAACGAGATATGTCACACTCTGAAGGGTTTCCGTCAATAGTC AATAGACTGACGGGTTTTCGGGACTTTTAAAATAATGATATTTTCCAAAC AATCAGCCTGCATTAACTATATATGATGATGTCATCATTAGGTAATGTTA AAATGCATAATTTATTACCGACGGCCCGAACTGAGTGATAGGAAGATAAT AAACGCAATAACAAATATAGAAATCGTTTTATCTTTACATCGAACATGCA ATTTCACAAACATTCTTCTGATAAGAGAGGTAGCAAGCCATGTTTCAAGA TAAGGCCTTTTGTTTCGCATTTTTAATAAGCATTTGAACACCCCTCGACG TGATGTATCGCTTGATTAATGATACCGTTGTAAATATAAAAGCCTGTCAA AGTGTCATTCTTCATAATATGTTGTTTTCATAATGTATTTTCGTTTGTTT GTCAGACCTGTCTTCATCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGC ATCGGATAGTACCTTTCGTTTTGCCGAAGAATTTGAGGTATGATGTTACC CTTTCACCACCACTTTCACAAGTTTGTGTCAAAAATGACAAACGTGAACT TTTGGAAATTAACCTTTACTTATATCTTCCCTTTCATTAATATTTGTAAT AACCAAACAAGTTGACCATTTACACGCCATAATTTCTGTACAACATTTTT TTGGATGTTATTCAAAATGGGACGGAACGTCTAATTAATGATCATTAAGT CTTTTTAAGCCATCCTTAATATTACACAATTTCTTCTAATTATAACTTTC TTAATGTTTATCTTTCAGTCTATACGGGATGTCGGGAANATGTTTCAATC TTTAAAGCATTAAAAGCTTTATAAATCTTTAAAGCATTAAAAGCTTTATA AGTGCATGTCATGACCTTTCAGTGGGGGCATTTAGTGAAAGCTATGACTA GTTTAGATTTTAGATCATGGCCGTTTGTTTATTTTTTCGAGTTTGAGCGA AACTGTTTTGTCTGAACGAGATATGTCACATTCATTCTGAAGGGTTTCCG TCAATAGTCAATAGACTGACGGGTTTGCGGGACTTTTAAAATAATGATAT TTTCCAAACAATCAGCCTGTATTAACTATATATGATGATGTCATCATTAG GTAATGTTAAAATGCATAATTTATTACCGACGGCCCGAAACTGAGTGATA GGAAGATAATAAACGCAATAACAAATATAGGCATCGTTTTATCTTTACAT CGAACATGCAATTTCACAAACATTCTTCTGATAAGAGAGGTAGCAAGCCA TGTTTCAAGATAAGGCCTTTTGTTTCGCATTTTTAATAAGCATTTGAACA CCCCTCGACGTGTGTATCGCTTGATTAATGATACCGTTGTAAATATAAAA GCCTGTCAAAGTGTCATTCTTCATATGCTCTTATTTTCATAATGTATTTT CGTTTGTTTGTCAGACCTGTCTTCATCCGAGATTTTCGTGCATGGGTTGA AAGAAGTGCATCGGATAGTACCTTTCGTTTTGCCGAAGAATTTGAGGTAT GATGTTACCCTTTCACCACCACTTTCACAAGTTTGTGTCAAAAATGACAA ACGTGAACTTTTGGAAATTAACCTTTACTTATATCTTCCCTTTCATTAAT ATTTGTAATAACCAAACAAGTTGACCATTTACACGCCATAATTTCTGTAC AACATTTTTTTGGATGTTATTCAAAATGGGACGGAACGTCTAATTAATGA TCATTAAGTCTTTTTAAGCCATCCTTAATATTACACAATTTCTTCTAATT ATAACTTTCTTAATGTTTATCTTTCAGTCTATACGGGATGTCGGGAAATT TGAGAGGCATGAAGTTGCTGACATGGCAGAAAATAACGGCAAAAACCGAT ACGTCAACGTCTTACCATGTAAGTCAAGTTTCGTTTTAGGAAAATTTTTG GCTCTGAATTGAATTTATGATTCTTTCCTTAAAGAGAGATTTTTAGAAAT GTAGAAATTTTTTCTTGGTATTTCCTGTGATGTGACCACCATGCAGTCTT TATAGAATTTCTCCTTATTAATCATCTGTATTTTGGTTTACCAGACGATT ATACGCGAGTGAAACTATCGAGTATAGACGACGAACCTGGTTCGGACTAT ATCAACGCTAATTATATTCACGTGAGTTGTTGTGCATTCATCAATTTTAG CTTTTTGGATTATTATTTTTTCAAGATAATTTTTTAACTTGCCATACCGG ATCTGTTTTACAGCGGAAACAAATCAGACTTTAATACGGTTAGAATTTCG TCTTTGTAGGGTTACAAGCAACCACGAGCATACATAGCCACACAAGGACC CCTCCCAAGTACCACAGACCACTTCTGGCAGATGGTCTGGGAACAAAAAT CTCGAATCATTGTCATGGTTACGCAATGCAATGAGAAGAATCGTGTAAAA TGTCATCAATATTGGCCTGCATCAGGTTCGACGCGATACGGAGAAATCGA AGTAACGCTTAAGCACGAAACAATATATCCAGAATGGACCGAACGGGAAT TTCTAATGACATTCGAGGTGAGGAAAACTTCCCACGTTTTCTTGAACAGT TGATATTGGGTTGTCTGGTTCTCACTCTTTTAACGACGTTTATGGAGAAA TATTCGTCTCCTATTAATAACATGAATAAAAACAATATCTTTTATTATTT TAAAGGGCGAATCTCGATTACTCAGACATTTTCAATACACAGCATGGCCT GACCACGGCGTACCTCGCTCATCTAAAGAAATGTTACAGTTCGTGACGAC CGTTCGGTTTCATCAACGGCCCGATGACGGCCCTGTCATCTGTCATTGCT CGTAAGTTCTCTCCTCTTCACTTGCAGTAAATGACGTCATTTGTTTTCTT TCGGTTTTTAGAACAGCTCGGTAACGTAAAGGGTGAAGGGGTTGTATTTT TAGATTGGGAAATTAAACTTATTAAAAGAAGTTCTTAAAAATTTATCTTG TTCGTGCCTCCTTAACTTTTCATGCCAACCTATCTTAATTCGGAGCAATT TTCCTTAATGATAATTTCCTACACTTTTCTTGAATAGTTTCCTCATTAAA TTTAATCAGAAAATTCATGACAATCGGTTAAACCAGCTTAACGCAACCCA TTAGATAAATTGCACAATTTCGTGGTGGTGAATAACCAAGGGTAGCCATT CTTTCACACAACCAATATTTACTGCGACGCTGTTAAACGCTTTTTTTCGT AATTTCTACACACACCAAACCTCAAAAAACCCCTGACATACTTAACTTTA TACTAGTTCTTTTACGGTCTGTAAGTGTTCAAAATCTCATTAATCAAGCC TTGTTGTAAACGATTGTAGGGACATAAGATGCCATAACTTACTGCATCCT GTTATGACATAATATTAAGTAACAATTAATTATTTTGTTTGTGTTTTAGG GCGGGAGTTGGGCGCACAGGAACTTACTTGTGTGTTGATATTCTGGTCAA TAAACTACAGACCGAAAACAATGTAGATGTTTATGGTGTAGTGTGTTTAA TGAGGACTCAACGATGCTCCATGGTGCAGACTGAGGTAATGAAATACAGA CCACATTTTTAAGCATCTTCAAAACCTAATCTTTATTCAACATTTTTACA AACCTACTGTTTTCTAGAATTGTACTCTATACTAAAATATAGGATTGCTT TTACTTTCAGGACCAATACATCTTCATTCACCGAGTCATATTGGACTATT TGAAACAACGTGACGAAAAGCAACAAATCTTTTCCGGATATTCGACCTTA GAAATGCGAAGGAAAAGTAAAAGTGAATCCAATCCTGTCGAACCTGCGGC TGAAGGTACGTTTCAAGTTTGTTTTGATAAGTAATCCTCAAGAACTGTCT TCTCAGAACGCAAAAACCGTAGATCAAGAATAAACATAACGAATTCGAGA AAGAAACAAATCGTTTTTTGTTGGAACTTGATCAGACTTGTTTCATAATT CTGTCTTCTCAGAATGTAAAAACCATAGACCTCATCAGATTTGATATAAA AAAATCAATCAACAAATAAACAATTTTCTAAGAAATCATAACGAACTCGT GAAAGAAACAAATCATTTTTGTTGGCACTTGATCAAATTTGTTTCATAAT CTGTATGTTATCATATACAATCAGGTTTTTTACTCAATTAAGTTCGCATT ACAGATCGTCTGATCTTTCGGTGAATTACCGTGACGTCATAATAGATCAC GCTGGTCTTTGATGGGAATCAGTATTAGGAAATCGCAGTTTACAAATTTA TCAAGAAATTAAGAAAAGCAATTCGATTATAAAATCTGTGATATCTTATC CCCCTGATTTCTCCATATAAATGCAACATTGTTTGGTGAGAATTCAGCCT TTGTTCATCCCTTAATTATTTTTTCTCTCATCTTCAGCATTATTGAAAGA AGAAGAAAAAGAAGACGAGGAAGATGAAAATCTGGATAATGATGATGATG AAACGAAATCTGACGATTTTCTTTCCGAAGAATTCGAGAACAGCGATTTA GAAACACCTCCTGTATAATACGCATACTACCTCTTCATATTTGTAGACTT TTTTTTGACTTTATGTTGTGTAGAAAGAAAATGGATGCCCTTTTATCGGG TAGGATTTCATCTTAACAAGTGATGATCAAATATCACTCACCATGCATCT CCCTCATACTTCGTTCTTTAAAACATTTTTATTGTAATTTCTTTTTAAAT GGAAATTGTAAATAGGTACACTAGAAATTTAATTTTTATTTTGAAATTTT ATATAAATAGCGAGAGATAATATTAGTCTACTTTATTGTTATATTCTTCT TGGTTTACTTTCGTTGAATTCTTTCAAGATACCGATTGGCATAAGAAGAA GCTTTCTTTTTTGGGGGCTAAAGAAAACAAGATGATAATATAATAATTTT GTGTTCTTATTTATTATTGTAAATAATATTCTTCACATTGAAAGTGAGGT AAAGAAATATCTTAAAACAAACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000611XLOC_000611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001086-exon-sc0000007-1575043694:73129..73166TCONS_00001086-exon-sc0000007-1575043694:73129..73166Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:72510..72542TCONS_00001086-exon-sc0000007-1575043694:72510..72542Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:72057..72193TCONS_00001086-exon-sc0000007-1575043694:72057..72193Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:70900..71471TCONS_00001086-exon-sc0000007-1575043694:70900..71471Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:70487..70709TCONS_00001086-exon-sc0000007-1575043694:70487..70709Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:69663..69742TCONS_00001086-exon-sc0000007-1575043694:69663..69742Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:69103..69241TCONS_00001086-exon-sc0000007-1575043694:69103..69241Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:65140..65280TCONS_00001086-exon-sc0000007-1575043694:65140..65280Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:64530..64611TCONS_00001086-exon-sc0000007-1575043694:64530..64611Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:63149..63239TCONS_00001086-exon-sc0000007-1575043694:63149..63239Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:62896..62972TCONS_00001086-exon-sc0000007-1575043694:62896..62972Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:62500..62757TCONS_00001086-exon-sc0000007-1575043694:62500..62757Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:62216..62361TCONS_00001086-exon-sc0000007-1575043694:62216..62361Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:61482..61617TCONS_00001086-exon-sc0000007-1575043694:61482..61617Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:61212..61356TCONS_00001086-exon-sc0000007-1575043694:61212..61356Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1575043694:60040..60629TCONS_00001086-exon-sc0000007-1575043694:60040..60629Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:73129..73166TCONS_00001086-exon-sc0000007-1510915933:73129..73166Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:72510..72542TCONS_00001086-exon-sc0000007-1510915933:72510..72542Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:72057..72193TCONS_00001086-exon-sc0000007-1510915933:72057..72193Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:70900..71471TCONS_00001086-exon-sc0000007-1510915933:70900..71471Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:70487..70709TCONS_00001086-exon-sc0000007-1510915933:70487..70709Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:69663..69742TCONS_00001086-exon-sc0000007-1510915933:69663..69742Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:69103..69241TCONS_00001086-exon-sc0000007-1510915933:69103..69241Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:65140..65280TCONS_00001086-exon-sc0000007-1510915933:65140..65280Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:64530..64611TCONS_00001086-exon-sc0000007-1510915933:64530..64611Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:63149..63239TCONS_00001086-exon-sc0000007-1510915933:63149..63239Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:62896..62972TCONS_00001086-exon-sc0000007-1510915933:62896..62972Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:62500..62757TCONS_00001086-exon-sc0000007-1510915933:62500..62757Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:62216..62361TCONS_00001086-exon-sc0000007-1510915933:62216..62361Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:61482..61617TCONS_00001086-exon-sc0000007-1510915933:61482..61617Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:61212..61356TCONS_00001086-exon-sc0000007-1510915933:61212..61356Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1510915933:60040..60629TCONS_00001086-exon-sc0000007-1510915933:60040..60629Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:73129..73166TCONS_00001086-exon-sc0000007-1491911889:73129..73166Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:72510..72542TCONS_00001086-exon-sc0000007-1491911889:72510..72542Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:72057..72193TCONS_00001086-exon-sc0000007-1491911889:72057..72193Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:70900..71471TCONS_00001086-exon-sc0000007-1491911889:70900..71471Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:70487..70709TCONS_00001086-exon-sc0000007-1491911889:70487..70709Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:69663..69742TCONS_00001086-exon-sc0000007-1491911889:69663..69742Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:69103..69241TCONS_00001086-exon-sc0000007-1491911889:69103..69241Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:65140..65280TCONS_00001086-exon-sc0000007-1491911889:65140..65280Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:64530..64611TCONS_00001086-exon-sc0000007-1491911889:64530..64611Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:63149..63239TCONS_00001086-exon-sc0000007-1491911889:63149..63239Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:62896..62972TCONS_00001086-exon-sc0000007-1491911889:62896..62972Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:62500..62757TCONS_00001086-exon-sc0000007-1491911889:62500..62757Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:62216..62361TCONS_00001086-exon-sc0000007-1491911889:62216..62361Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:61482..61617TCONS_00001086-exon-sc0000007-1491911889:61482..61617Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:61212..61356TCONS_00001086-exon-sc0000007-1491911889:61212..61356Clytia hemisphaericaexon
TCONS_00001086-exon-sc0000007-1491911889:60040..60629TCONS_00001086-exon-sc0000007-1491911889:60040..60629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:60040..73166 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.129334 0.00866324 0.00303882 2.25443 1.30145 3.31936 2.53504 1.63544 2.24144 1.28927 1.67371 0.76667 0.553925 0.0726328 1.05995 0.808049 3.6014 4.6129e-06 0.725846 0.159052 1.25346 5.66549e-06 0.0161587 0.479184 0.185457 1.73919e-09 0.000981417 0.336241 0.00154995
Blast
BLAST of TCONS_00001086 vs. Swiss-Prot (Human)
Match: PTPRB (Receptor-type tyrosine-protein phosphatase beta OS=Homo sapiens GN=PTPRB PE=1 SV=3)

HSP 1 Score: 315.079 bits (806), Expect = 3.628e-89
Identity = 182/456 (39.91%), Postives = 261/456 (57.24%), Query Frame = 3
Query:  900 SAAKFLNIKLG-----ISKDCTKVDQEICNGPLTPSTNYSIQLEVF----------FTNGTSLTTPSSKPWSTLQKAVIVPQEGVRSSXXXXXXXXXXXXXXXXXXXXXXXXCRKKRSRKYLRGQQDKDSMGVSLMSTNYQRNGASRLKKKFSGPDILTERRKSLKGMTRPVFIRDFRAWVERSASDSTFRFAEEFESIRDVGKFERHEVADMAENNGKNRYVNVLPYDYTRVKLSSIDDEPGSDYINANYIHGYKQPRAYIATQGPLPSTTDHFWQMVWEQKSRIIVMVTQCNEKNRVKCHQYWPAS-GSTRYGEIEVTLKHETIYPEWTEREFLMTFEGE---SRLLRHFQYTAWPDHGVPRSSKEMLQFVTTVR--FHQRPDDGPVICHCSAGVGRTGTYLCVDILVNKLQTENNVDVYGVVCLMRTQRCSMVQTEDQYIFIHRVILDYLKQR 2204
            S +K  NIKLG     +   C    Q+ C+GPL P T Y I +  F          FT      T  S P +T  + +    EGV + + +I + V +V  +          CR+K S       +++ S  +S+           R  +  S    L   +K  +  + P+ I  F     +  +DS +  ++E+E ++DVG+ +  ++A + EN GKNRY N+LPYD TRVKLS++DD+P SDYINA+YI G    R YI TQGPLP T D FW+MVWEQ    IVMVTQC EK RVKC  YWPA   S  YG++ + +  E++ PEWT REF +  E +    RL+RHF YT WPDHGVP +++ ++QFV TVR   ++ P  GP + HCSAGVGRTGT++ +D ++ +L ++++VD+YG V  +R  R  MVQTE QY+++H+ + D L+ R
Sbjct: 1539 SNSKSFNIKLGAEMESLGGKCDPTQQKFCDGPLKPHTAYRISIRAFTQLFDEDLKEFTKPLYSDTFFSLPITTESEPLFGAIEGVSAGLFLIGMLVAVVALLI---------CRQKVSHG-----RERPSARLSI-----------RRDRPLSVH--LNLGQKGNRKTSCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRAR 1967          
The following BLAST results are available for this feature:
BLAST of TCONS_00001086 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTPRB3.628e-8939.91Receptor-type tyrosine-protein phosphatase beta OS... [more]
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