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TCONS_00001085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001085
Unique NameTCONS_00001085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2699

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001085 ID=TCONS_00001085|Name=TCONS_00001085|organism=Clytia hemisphaerica|type=transcript|length=2699bp
ATTTGGATGACTCTTTGTGAAAACGATGTATCATCATCATGATCTTTGAG
AAGATGGTGATGCTTCTGCTTGCCATTTGGTTTTATGGTATAACAGCAAC
AACGATACAGAATGAATTTTCATCCACTTTTACATCCATCGAACTTGCTT
CGATTTCTCCATCCGCCAGTTCGATGAAAACCAACACCCTAAATGAACCT
TCCCGAACACCACCCACTCAAAGctCCCTGGAGCACACGTCAACTGTTGC
TACAAATTATTTGGTGACGCCCAACAATCTCGCAACATCGCAGTCAGACT
CGCCAACATCCGCAAAAGCTATGACCACTGATTCAAAGAGTTCGTCTCCT
AAGAACATTCAACCAAGCACATCTACGAGAGAAATAGTCTCATTGACAAC
CTCCATTATATCCCTACCACCATCAAGAAAACCCTCCACTACTCAACAAC
CAACCACAACCACAACGCAACCACCTTTGCCAGCATTTAAGCAAAATATT
GATGATACCAGTATATTTGTTTTGCTACCTTTGTCTTATCCTGTCGACAG
CTGGGAAGAGATCACTGTTTATGTCGTCATTCCTTCACTTGGTTACAAGT
CAACGGGCTCATGGTACAGAATTTTcatcaagaaagaaaaacacgACCGT
TACCCTGCACTTGTCATGAAGCCCAAGCAACTTTCGAACGATCCACGTCG
AAAAAGAAGAAGTGCAGCCAAATTCTTGAACATCAAACTTGGCATCAGTA
AAGACTGTACTAAAGTCGATCAAGAGATTTGTAATGGTCCTCTAACTCCC
TCAACTAACTACAGTATTCAGTTGGAAGTCTTCTTCACCAATGGAACATC
TTTGACAACCCCCTCCTCAAAACCCTGGTCTACTTTACAAAAAGcGGTGA
TCGTGCCACAAGAAGGTGTTCGTTCATCTGTCGTCATCATCATCCTCACC
GTCCTTCTCGTCTTCTTCATCTTTCTCACCATCATCATCACAATCATCGT
CTGCCGTAAGAAACGATCACGAAAATATCTCAGAGGGCAGCAAGACAAGG
ACAGTATGGGTGTGTCCCTCATGTCCACCAACTATCAGAGGAATGGGGCG
AGCAGGTTGAAGAAGAAATTCTCAGGACCAGATATTCTCACTGAGcgacg
aaaaagtctgaaaggAATGACGAGACCTGTCTTCATCCGAGATTTTCGTG
CATGGGTTGAAAGAAGTGCATCGGATAGTACCTTTCGTTTTGCCGAAGAA
TTTGAGTCTATACGGGATGTCGGGAAATTTGAGAGGCATGAAGTTGCTGA
CATGGCAGAAAATAACGGCAAAAACCGATACGTCAACGTCTTACCATACG
ATTATACGCGAGTGAAACTATCGAGTATAGACGACGAACCTGGTTCGGAC
TATATCAACGCTAATTATATTCACGGTTACAAGCAACCACGAGCATACAT
AGCCACACAAGGACCCCTCCCAAGTACCACAGACCACTTCTGGCAGATGG
TCTGGGAACAAAAATCTCGAATCATTGTCATGGTTACGCAATGCAATGAG
AAGAATCGTGTAAAATGTCATCAATATTGGCCTGCATCAGGTTCGACGCG
ATACGGAGAAATCGAAGTAACGCTTAAGCACGAAACAATATATCCAGAAT
GGACCGAACGGGAATTTCTAATGACATTCGAGggCGAATCTCGATTACTC
AGACATTTTCAATACACAGCATGGCCTGACCACGGCGTACCTCGCTCATC
TAAAGAAATGTTACAGTTCGTGACGACCGTTCGGTTTCATCAACGGCCCG
ATGACGGCCCTGTCATCTGTCATTGCTCgGCGGGAGTTGGGCGCACAGGA
ACTTACTTGTGTGTTGATATTCTGGTCAATAAACTACAGACCGAAAACAA
TGTAGATGTTTATGGTGTAGTGTGTTTAATGAGGACTCAACGATGCTCCA
TGGTGCAGACTGAGGACCAATACATCTTCATTCACCGAGTCATATTGGAC
TATTTGAAACAACGTGACGAAAAGCAACAAATCTTTTCCGGATATTCGAC
CTTAGAAATGCGAAGGAAAAGTAAAAGTGAATCCAATCCTGTCGAACCTG
CGGCTGAAGCATTattgaaagaagaagaaaaagaagacgaGGAAGATGAA
AATCTggataatgatgatgatgaaacgAAATCTGACGATTTTCTTTCCGA
AGAATTCGAGAACAGCGATTTAGAAACACCTCCTGTATAATACGCATACT
ACCTCTTCATATTTgtagacttttttttgactttatgtTGTGTAGAAAGA
AAATGGATGCCCTTTTATCGGGTAGGATTTCATCTTAACAAGTGATGATC
AAATATCACTCACCATGCATCTCCCTCATACTTCGttctttaaaacattt
ttattgtaatttctttttaaatggaAATTGTAAATAGGTACactagaaat
ttaatttttattttgaaattttatataaaTAGCGAGAGATAATATTAGTC
TACTTTATTGTTATATTCTTCTTGGTTTACTTTCGTTGAATTCTTTCAAG
ATACCGATTGGCATAAGAAGAAGCTTTCTTTTTTGGGGGCTAAAGAAAAC
AAGATGATAATATAATAATTTTGTGTTCTTATTTATTATTGTAAATAATA
TTCTTCACATTGAAAGTGAGGTAAAGAAATAtcttaaaacaaacaaaag
Run BLAST on NCBI

transcript from alignment at sc0000007:60040..72795-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001085 ID=TCONS_00001085|Name=TCONS_00001085|organism=Clytia hemisphaerica|type=transcript|length=12756bp|location=Sequence derived from alignment at sc0000007:60040..72795- (Clytia hemisphaerica)
ATTTGGATGACTCTTTGTGAAAACGATGTATCATCATCATGATCTTTGAG AAGGTTGTCGTAATATCAAAGTAGTGTTATCCTCTTCATTACGTTTTATA GAGTTCATCTAATACTTATTAAGCGTATAATATATATTCATTTCACAAAA AGCTGTAAGTCTTATCATTCATATCGCTTTCATTTTTTATATGTTGTATG AACAGTTAAGAGAGGGGTGTCGTATACTGAACTTTTTTGGTTTTCTTTCT TAGATGGTGATGCTTCTGCTTGCCATTTGGTTTTATGTAAGTTTTCGTTT CTTTTTCATTCTTCGCATTCTCAGAATATATTTTTGTAATTCTTCAGGAA GTCTGGATTAGTTAAAATAAAATGTCTACGTGATGGTATTCTATAGTATG TCTCGAGACACGCCCTTTTATATAAGATCCTGACCCGTGAATAGCTACTT ATATTTTGGGCAACGGGTTGGTATGATATGTGCAGCGAAAAATAGTAAAA CGATAATTGTTCCCGTTTCGTTGAACCAGGAAATTTAGAACAAGGAAATT TAATGATCCATCACTTCTTGGAATGAATTACTGATTTTTTCGTTTCCTTC AGGGTATAACAGCAACAACGATACAGAATGAATTTTCATCCACTTTTACA TCCATCGAACTTGCTTCGATTTCTCCATCCGCCAGTTCGATGAAAACCAA CACCCTAAATGAACCTTCCCGAACACCACCCACTCAAAGGTATAGCTCCT CAATGAACATCATTGCTGAAAGACTGGAAACAAGTAACCTATCAATAGAC ATGACTGTACGAACTTTTATATCAACAACTAAATTGATAATGGTACCTGA CTTTTCTACAGACATGAACGTTAAAGAATCACCAACAACATCTATAGACT TTTCAACATCACAACTCGTGACTGACTTACAAACTTCTATATCAAGTGAT CGTCAAACAAACTCATCCACAGACCTTTCTATAACAGCACTGGACATGTT GTCTTCTATGAAGACCTCACAATTTCAAACAGAGTTTTCCACGCACTTTC TTGACAGCTCTTCGCCATTTTCTTCTTCATCTTCTCCCATTGAAAAGTCT CTTTACTCTTCTTCGATTGCTTTGCCGTCCTCACTTTCATCTTCCTACCT CTTATTTTCTACCTCTGTTAGTTCCCAGTTCTCTAGCTTTTCTTCAAGCA TTTCTCCCAGTGTACCTTACAGTGTTTCTGCCAGCACCTCCTCGTCAACC ATTATCAGATCAGCTGAAGTGGAACCTTCTTCAAACATCATTTCAACTTT ACGGGCTTTCTCCACTGTTGACAGAAGCTACTCGTCATATGAAGCTTCTT CGCAACCATCAAACGTTGACAGTTTTTTAACATTACAAACGACCAACTTT GACGCTTCTTCAATCTTACAACAATCAACAACATCAGAAAAGACAGCTTT AACGACTGAATCTGTGGTAACCTCTACCCTCCAGTTATCCTCCCAACCCT TCCATAGATCCTTTGATATTTTTTCAAGCTCCCTGGAGCACACGTCAACT GTTGCTACAAATTATTTGGTGACGCCCAACAATCTCGCAACATCGCAGTC AGACTCGCCAACATCCGCAAAAGCTATGACCACTGATTCAAAGAGTTCGT CTCCTAAGAACATTCAACCAAGCACATCTACGAGAGAAATAGTCTCATTG ACAACCTCCATTATATCCCTACCACCATCAAGAAAACCCTCCACTACTCA ACAACCAACCACAACCACAACGCAACCACCTTTGCCAGCATTTAAGCAAA ATATTGATGATACCAGTATATTTGTTTTGCTACCTTTGTCTTATCCTGTC GACAGCTGGGAAGAGATCACTGTTTATGTCGTCATTCCTTCACTTGGTAA GTCACTAATTCTTTTTGTAAATTTTGAGATTTTTATTTCTTTTTGCCACA TTTTCTTTCATGTATTCAATTTCGTAATTTCGTATTTAAGAAAAATTTAA GCATGCAAAAAAGTAGTATCTACGAAAATGTAAAAGGTAACAGTCCTAGT GTCCCTACGGCTATAAAGATACATATTTTTATACAGGTTACAAGTCAACG GGCTCATGGTACAGAATTTTCATCAAGAAAGAAAAACACGACCGTTACCC TGCACTTGTCATGAAGCCCAAGCAACTTTCGAACGATCCACGTCGAAAAA GAAGAAGTGCAGCCAAATTCTTGAACATCAAACTTGGCATCAGTAAAGAC TGTACTAAAGTCGATCAAGAGATTTGTAATGGTCCTCTAACTCCCTCAAC TAACTACAGGTTTTACTTAAGTCTGTTCCAAAAAACTCCGTACTTTACAC ATTGCTCTCACGGGAAAAAAATATAACTAAAAGTAATTAATACCTTTTTG AAAAGATAATTTTAGCAGCTCGATGTGAGCTTTAAAGAATTTTCTAAGGA TTTGAAAATGAAGATGAAAAGTGAAAGAAAAAATGAAGATTTTTCTACTC GGTAATATCTTTTCTGAAACAGCGCTGATTTCAAGTAAGTATTCAGTTTT TCTTTTTGGTAAAGAGTTATAGCCTCTTGTCCATTTCGATCGTTTCTAGC AATTTATGGCCTATTTTGACCTTTCTCGGAGGCTTGTGGTTTTCGATCGA AAAGTGATATAAAAGATCTTATAAAAAATCTTTCTAAGGAGGTATTACTT TTAGCTATATCTTTTCACTATATCTTTTCACCTAAAGAGGACTTTTAGAC CAAACTTTACAAGAAGTCTTTTTTTGTTGAGAAATATTGCGTAATAATTT CAAGACTACTCCCTCTCAGGTTTTCATTTATATTTTCGTCCAATGTATGA AAGACAACCCTCAAAGTTATATTTTCACTATTTTGAACCCACATGAAGTG GTAAAAGAAGGGAGACACACCCATCCTGAAGATCTAATTCAATTTCACAA TAAGTTGTTATTGACAAATAGAGACATGGGTATGATAAATATTCTCTTTG ATCAAGTGCAGATGTTTTCGAAGATGTATTAAACTTCTATTTTGTTCGTT TAGTATTCAGTTGGAAGTCTTCTTCACCAATGGAACATCTTTGACAACCC CCTCCTCAAAACCCTGGTCTACTTTACAAAAAGGTTGGTAACTTTTTTTT TTATTTCCTCCTTTGCTAGTTTCTTCTCCAGTAATCTCGTATTCAGATAT TACCTTGTTTTGTGATTGAGCTCTCCGAGTAAATGTTTGTACAACCCGGG ACGAAGATATTATTTTTCCCTGTCAACTAATGCCGTTGTCTAGGGAGGCG GTGACTTGTTTCGTGGGAGGTTTATCACTTACAAATCTGTGTTTTGGAAG AACCAAAACAATGTACGCAAGGTTTGATATGAAGGCCTGCTCAAGATCAA TAATGAACGGCTTTATGAAACTATTTTGTTAATATCACGAGAAGCCTTCA GTTAATTTTTGATTTTGATTTGATTTTTTTTANATGGCCAGTTCATTTTT TTTATTTCGATTCTTGAGGAGTGTGTTCTATAAAATTTGATTTTTTTCTT CCAGCGGTGATCGTGCCACAAGAAGGTGTTCGTTCATCTGTCGTCATCAT CATCCTCACCGTCCTTCTCGTCTTCTTCATCTTTCTCACCATCATCATCA CAATCATCGTCTGCCGTAAGAAACGATCACGAAAATATCTCAGGTATGTA TCTTACGTGTTTCAACCTCTTTTCGTCATTTTTTTTTAGGCCCCTCCCAA GTGTTACCAACTATTCTTCGTTAATATTTTTTTAATGAATTATGAATTTT ATGAGACAGTCCTTGAAACAATCGGTGTTCTTCACTGATCTGAAAGAAAA AAGCTTCCATTAGAGTATAGCAAAAAAAGGTCCTCCGATCCTTCCTACGA GCAGTTCATTTTGTACTACAACCAGGAAATGGACTATATCCAGAATAATT TGAATTAAACAGGGAAATTATATAACAATTAATGGACATCCTCTCCAAGG GTAGCAGTGCTTTTGCAGCTTGCCGTTACTATATTCAATTTATAGACATA CAGCTAACTGTGGTATTTTGTAGCAGGTTCTCTCTTTGAAATGTAGATTT TATATAAATTAAATGTTTATATGTCACTTCAATAAACCTTCTATCATTTG CAAAGCTATGTTTCTTGGCGTCAGTTTGTTTGCGATTTCTTAAAACGATC GATTAACCTCTATGTCCGTCTTTCATAAGTATGTTGCGATTGATGTTGGA TGGAAGCAGGCACTTTGCATCTTTTTGTGACGGTCGGATGAATTAAACGC TTTCACGGGCTGAGAAACTCTCATTGTGACGTTCACAGAGAGTGTCAAAT AGGTTAAGCCTCGTCATTTGGCACAATGTCCCATCAAAAAGTTTTGATTG ATTTTGCAGACGAAATTCTCCAATAAATAGCGCATGCTGGTTATGTTTTC CATCATTTTCTTTTTAAAATATTGGATTCTGATTGCTTAATCTCATCAAA AAGACTTCATATGGCGCTCTCTTTCCGAAAGAGAAGAAGAGGTTGAAGAA GAAGAGTTTGCTCTTTCAAAACTCCGTCCTCGCTCCTTTATAACCATTTC CAACTATTGCTTTTGAAATAATTAAGGAGTTTTTAAAGAGTTGTATAATG GAAAAAGAAGGGCTTAAAAAGCTGAAACGAATAGTTTACGACTAGTTGCT TTTATTTCTGCTGATTGAGAAGTAAAGAAGTCATTTTCTGGGTGAAACAT GAAAGGTTGTTTAGGCTAGGCTCTTAATTCGAATATAGATTTATGGAAAC TGGAATTCCTTTCTTTCTCAAAACGGAAATGAAATTAGCATTTGTTGATG ATTTGTGTTTTCGATTAACTGGATTGGATTGATTGGATGAAACCATAAAT TTGATGATATAAAACATTAACGACGATTACGTAACTCCTTTTCGCAGCTT TAATTGCATCCGGCGTTTGATTTTAGCACAGTGACAAATTTTATGTAGTG TGCAATATATTGGTTGGTATTATCAGTACATTTGATAAGCTGCTTCTGCT CATTAACCACCTTCAAACAATTATTCTTCCTTATTCTCTTCGTTTCGTCA TTTTCCTGTTTTCGACAAAACACGTGTTTATTTTCGACCATATTATTGCG AGGATGTTTTCGCGTGAAGCGGTGAAGAAGAAGGAGGATCAAGGGAAGAT GTCCTCTGCACTTGCATTTTTTGTAGACGGGATATGTCCTTTTCATCACT TGTACTCGGTATCTTGAATTTTGCGAATGCTTTTCAAATACTTTTTAGAG TAATTTTTAAAGGGAGATAAAATATGCTTTTGCTGTAAAATCGGGTTTTG TTTTGTTGTTGCCTTGACAACAATCATTCCATCAAAATGGCTACGGCTTA TCCCCCTTCCTGGTGCAAAAAAGCGGCGCCAATAATCCCTCTTCTATCTC TATTTAATTAATCCAACATTTTCATTACTTTTTCAAAAGAAGACTTAATT TGTCTTTTCCTTCTCACTCTTTTAATTTGTTATTTCGGGAGATGGATATT ATATGTTCTTCCTTTGCAAGCTTCAAAACATCAGCACATGATATTGCTGC TAATGTCTTTGTTTCGCACCGGCGTAGGAAACTTACTTTTGATCAATTAA GAAAGACAATAGAATGTAAGAATTGATCTCTTAATGGCTTTGCGTCTCAT CAGCCAAAATATTACTTCACTAATTGTCTAATCTTTATCACTTGATGATT TCAACTGGCTTGTGTGTTCTTTAATAGATGTCCTTATGGAAGTTGTTTGC GGAGAGTCAACGGAGTTAGAAGTACTTTAGTAAAGTCAATGTTTACACAT TATGTAATGTGGCGAGAACGTCCTTCTTTAATTTTAGCGAATGATATCAT GGGAATTTGCGACCGTTATTTTTTTGTGTGTTTTTGTGATGAGTTGTACA TCATTTTTGGTCTTTCGTGTTTAAGCGTCACTGAGGGGTAATGAAAGTTC ACTTTCAGATCTTTTGATACAGAAGGGGGGAACATTCTGGTTGGGCGTTT GATTGTTTTGTTTGAGACATGGATTAAATGGGAATGGAAGGGAATTCAGC TGCTTCGTTGAGTTTTCACGTTTACACATCATCATAGAGAGACACATGCA CCTTCTCATTTCATTTTCAACCTCAAAGAAAAGAAAACAGAAAGAAAGGG AATATTTCTCAATAATTATTTCTTCTCCAACATCTTCATATATTACATCG TATTCATTTTTTCCAAAACATGTGTCTGTTTGTCTTCTCTATTTTTCTTC TTTCTTTCTTCTTCTTTCCATTTCTCGACTTGAACACTCTTCCCTCTCAT CACAACGTTCAAGTGAAAGAGTGATCTGTTTCTTTCTCGACTGAACAGCA CAGCAAGACTNTGAACACTCTTCCCTCTCATCACAACACAACGTTCAAGT GAAAGAGTGATCTGTTTCTTTCTCGACTGAACAACACAGCAAGACTCTCA CGATGTGTTCCGAAGCACCCTCAAACTACCGAAGACGTCGTTTTCAAATG TGCTTCTGCTTAGTGTAAGTCTTTACTTCCCTTTTCAACCTTTTTTTCCT TTCTTTCTGTTTTCATGCAGGGCTTTAGAGGTGGTGAATTTCCTCTGTTT TCATCGCGGAAATCTAGTTTCTTTTTCTGATTTTGAACACCCAAAAGATA ATGGAGGAAGGGTGATTTCCACCATCGGTACTTTCCGACTGATGTTGTTG TGTGGGCTTCTCTTGAGTTCAGTGGGTAGTTCATCCTATGGAAAGCAATA GGAACAAAATACAACAAGTCAATGATAGAAATTTTAATTGACTTATTCAC ATGGTTAGGTGAACTTTCTTTTTGTGATGAGTACTTTTATAAAAAGAGAA AGTCGAAGCTTTATTAAACTGTCTTGATCCTGTATTATAATGTTTATTTT GAACATGAGACAAAGAGAAGTGTATGAATCATGCGAGAAGTTAGTGACAT CTCTTCAATTATAAATAACATTCTTACTTCAAAGCATTCACACCACACTT CTATCGAAATTCATACACTGTATTTAAAACAAGTTGAATGTTGCATTCTG TAACTTCGCAATGAAGAAGAAAATTTGCTGTTGATTTTCCTTTTATGGTG TTTGTATGTGTTGAATGATTGGTTTCTGCTTTGACGTGCTTCCATCTCTG ACTGAGAATCAATGTCTCATTTCATTCAAATGACATACTTTGCACTCACA CAAGTCTTCTAACTGCTTTTACTGTGTATTATATTTATTAGTTGCAAAAA ATTAAAAACAAAGGGATCATTTTTGAAGATATGCGGATGTACGACTTGGT GGACGAGAACAATGTGTTGTTTGACAAGCAAACCATCAAACGACACAATA GTCGTGAACTGAACAACAATGAACCCGCTCTTCTCCGAAGAACTGTTTCT TTTTCCAACACCATAAGGTGTAAATGTTCAAAACTCTTAACTTTAACACC CCATCTTCACCGTAGAGGGCAGCAAGACAAGGACAGTATGGGTGTGTCCC TCATGTCCACCAACTATCAGAGGAATGGGGCGAGCAGGTTGAAGAAGAAA TTCTCAGGACCAGATATTCTCACTGAGCGACGAAAAAGTCTGAAAGGAAT GACGAGGTAAGTGTTTTCTCTTTTTTCTAATTTTTAGATCATGGCCGTTT GTTTATTTTTTCGAGTTTGAGCGAAACTGTTTTGTCTGAACGAGATATGT CACACTCTGAAGGGTTTCCGTCAATAGTCAATAGACTGACGGGTTTTCGG GACTTTTAAAATAATGATATTTTCCAAACAATCAGCCTGCATTAACTATA TATGATGATGTCATCATTAGGTAATGTTAAAATGCATAATTTATTACCGA CGGCCCGAACTGAGTGATAGGAAGATAATAAACGCAATAACAAATATAGA AATCGTTTTATCTTTACATCGAACATGCAATTTCACAAACATTCTTCTGA TAAGAGAGGTAGCAAGCCATGTTTCAAGATAAGGCCTTTTGTTTCGCATT TTTAATAAGCATTTGAACACCCCTCGACGTGATGTATCGCTTGATTAATG ATACCGTTGTAAATATAAAAGCCTGTCAAAGTGTCATTCTTCATAATATG TTGTTTTCATAATGTATTTTCGTTTGTTTGTCAGACCTGTCTTCATCCGA GATTTTCGTGCATGGGTTGAAAGAAGTGCATCGGATAGTACCTTTCGTTT TGCCGAAGAATTTGAGGTATGATGTTACCCTTTCACCACCACTTTCACAA GTTTGTGTCAAAAATGACAAACGTGAACTTTTGGAAATTAACCTTTACTT ATATCTTCCCTTTCATTAATATTTGTAATAACCAAACAAGTTGACCATTT ACACGCCATAATTTCTGTACAACATTTTTTTGGATGTTATTCAAAATGGG ACGGAACGTCTAATTAATGATCATTAAGTCTTTTTAAGCCATCCTTAATA TTACACAATTTCTTCTAATTATAACTTTCTTAATGTTTATCTTTCAGTCT ATACGGGATGTCGGGAANATGTTTCAATCTTTAAAGCATTAAAAGCTTTA TAAATCTTTAAAGCATTAAAAGCTTTATAAGTGCATGTCATGACCTTTCA GTGGGGGCATTTAGTGAAAGCTATGACTAGTTTAGATTTTAGATCATGGC CGTTTGTTTATTTTTTCGAGTTTGAGCGAAACTGTTTTGTCTGAACGAGA TATGTCACATTCATTCTGAAGGGTTTCCGTCAATAGTCAATAGACTGACG GGTTTGCGGGACTTTTAAAATAATGATATTTTCCAAACAATCAGCCTGTA TTAACTATATATGATGATGTCATCATTAGGTAATGTTAAAATGCATAATT TATTACCGACGGCCCGAAACTGAGTGATAGGAAGATAATAAACGCAATAA CAAATATAGGCATCGTTTTATCTTTACATCGAACATGCAATTTCACAAAC ATTCTTCTGATAAGAGAGGTAGCAAGCCATGTTTCAAGATAAGGCCTTTT GTTTCGCATTTTTAATAAGCATTTGAACACCCCTCGACGTGTGTATCGCT TGATTAATGATACCGTTGTAAATATAAAAGCCTGTCAAAGTGTCATTCTT CATATGCTCTTATTTTCATAATGTATTTTCGTTTGTTTGTCAGACCTGTC TTCATCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGCATCGGATAGTAC CTTTCGTTTTGCCGAAGAATTTGAGGTATGATGTTACCCTTTCACCACCA CTTTCACAAGTTTGTGTCAAAAATGACAAACGTGAACTTTTGGAAATTAA CCTTTACTTATATCTTCCCTTTCATTAATATTTGTAATAACCAAACAAGT TGACCATTTACACGCCATAATTTCTGTACAACATTTTTTTGGATGTTATT CAAAATGGGACGGAACGTCTAATTAATGATCATTAAGTCTTTTTAAGCCA TCCTTAATATTACACAATTTCTTCTAATTATAACTTTCTTAATGTTTATC TTTCAGTCTATACGGGATGTCGGGAAATTTGAGAGGCATGAAGTTGCTGA CATGGCAGAAAATAACGGCAAAAACCGATACGTCAACGTCTTACCATGTA AGTCAAGTTTCGTTTTAGGAAAATTTTTGGCTCTGAATTGAATTTATGAT TCTTTCCTTAAAGAGAGATTTTTAGAAATGTAGAAATTTTTTCTTGGTAT TTCCTGTGATGTGACCACCATGCAGTCTTTATAGAATTTCTCCTTATTAA TCATCTGTATTTTGGTTTACCAGACGATTATACGCGAGTGAAACTATCGA GTATAGACGACGAACCTGGTTCGGACTATATCAACGCTAATTATATTCAC GTGAGTTGTTGTGCATTCATCAATTTTAGCTTTTTGGATTATTATTTTTT CAAGATAATTTTTTAACTTGCCATACCGGATCTGTTTTACAGCGGAAACA AATCAGACTTTAATACGGTTAGAATTTCGTCTTTGTAGGGTTACAAGCAA CCACGAGCATACATAGCCACACAAGGACCCCTCCCAAGTACCACAGACCA CTTCTGGCAGATGGTCTGGGAACAAAAATCTCGAATCATTGTCATGGTTA CGCAATGCAATGAGAAGAATCGTGTAAAATGTCATCAATATTGGCCTGCA TCAGGTTCGACGCGATACGGAGAAATCGAAGTAACGCTTAAGCACGAAAC AATATATCCAGAATGGACCGAACGGGAATTTCTAATGACATTCGAGGTGA GGAAAACTTCCCACGTTTTCTTGAACAGTTGATATTGGGTTGTCTGGTTC TCACTCTTTTAACGACGTTTATGGAGAAATATTCGTCTCCTATTAATAAC ATGAATAAAAACAATATCTTTTATTATTTTAAAGGGCGAATCTCGATTAC TCAGACATTTTCAATACACAGCATGGCCTGACCACGGCGTACCTCGCTCA TCTAAAGAAATGTTACAGTTCGTGACGACCGTTCGGTTTCATCAACGGCC CGATGACGGCCCTGTCATCTGTCATTGCTCGTAAGTTCTCTCCTCTTCAC TTGCAGTAAATGACGTCATTTGTTTTCTTTCGGTTTTTAGAACAGCTCGG TAACGTAAAGGGTGAAGGGGTTGTATTTTTAGATTGGGAAATTAAACTTA TTAAAAGAAGTTCTTAAAAATTTATCTTGTTCGTGCCTCCTTAACTTTTC ATGCCAACCTATCTTAATTCGGAGCAATTTTCCTTAATGATAATTTCCTA CACTTTTCTTGAATAGTTTCCTCATTAAATTTAATCAGAAAATTCATGAC AATCGGTTAAACCAGCTTAACGCAACCCATTAGATAAATTGCACAATTTC GTGGTGGTGAATAACCAAGGGTAGCCATTCTTTCACACAACCAATATTTA CTGCGACGCTGTTAAACGCTTTTTTTCGTAATTTCTACACACACCAAACC TCAAAAAACCCCTGACATACTTAACTTTATACTAGTTCTTTTACGGTCTG TAAGTGTTCAAAATCTCATTAATCAAGCCTTGTTGTAAACGATTGTAGGG ACATAAGATGCCATAACTTACTGCATCCTGTTATGACATAATATTAAGTA ACAATTAATTATTTTGTTTGTGTTTTAGGGCGGGAGTTGGGCGCACAGGA ACTTACTTGTGTGTTGATATTCTGGTCAATAAACTACAGACCGAAAACAA TGTAGATGTTTATGGTGTAGTGTGTTTAATGAGGACTCAACGATGCTCCA TGGTGCAGACTGAGGTAATGAAATACAGACCACATTTTTAAGCATCTTCA AAACCTAATCTTTATTCAACATTTTTACAAACCTACTGTTTTCTAGAATT GTACTCTATACTAAAATATAGGATTGCTTTTACTTTCAGGACCAATACAT CTTCATTCACCGAGTCATATTGGACTATTTGAAACAACGTGACGAAAAGC AACAAATCTTTTCCGGATATTCGACCTTAGAAATGCGAAGGAAAAGTAAA AGTGAATCCAATCCTGTCGAACCTGCGGCTGAAGGTACGTTTCAAGTTTG TTTTGATAAGTAATCCTCAAGAACTGTCTTCTCAGAACGCAAAAACCGTA GATCAAGAATAAACATAACGAATTCGAGAAAGAAACAAATCGTTTTTTGT TGGAACTTGATCAGACTTGTTTCATAATTCTGTCTTCTCAGAATGTAAAA ACCATAGACCTCATCAGATTTGATATAAAAAAATCAATCAACAAATAAAC AATTTTCTAAGAAATCATAACGAACTCGTGAAAGAAACAAATCATTTTTG TTGGCACTTGATCAAATTTGTTTCATAATCTGTATGTTATCATATACAAT CAGGTTTTTTACTCAATTAAGTTCGCATTACAGATCGTCTGATCTTTCGG TGAATTACCGTGACGTCATAATAGATCACGCTGGTCTTTGATGGGAATCA GTATTAGGAAATCGCAGTTTACAAATTTATCAAGAAATTAAGAAAAGCAA TTCGATTATAAAATCTGTGATATCTTATCCCCCTGATTTCTCCATATAAA TGCAACATTGTTTGGTGAGAATTCAGCCTTTGTTCATCCCTTAATTATTT TTTCTCTCATCTTCAGCATTATTGAAAGAAGAAGAAAAAGAAGACGAGGA AGATGAAAATCTGGATAATGATGATGATGAAACGAAATCTGACGATTTTC TTTCCGAAGAATTCGAGAACAGCGATTTAGAAACACCTCCTGTATAATAC GCATACTACCTCTTCATATTTGTAGACTTTTTTTTGACTTTATGTTGTGT AGAAAGAAAATGGATGCCCTTTTATCGGGTAGGATTTCATCTTAACAAGT GATGATCAAATATCACTCACCATGCATCTCCCTCATACTTCGTTCTTTAA AACATTTTTATTGTAATTTCTTTTTAAATGGAAATTGTAAATAGGTACAC TAGAAATTTAATTTTTATTTTGAAATTTTATATAAATAGCGAGAGATAAT ATTAGTCTACTTTATTGTTATATTCTTCTTGGTTTACTTTCGTTGAATTC TTTCAAGATACCGATTGGCATAAGAAGAAGCTTTCTTTTTTGGGGGCTAA AGAAAACAAGATGATAATATAATAATTTTGTGTTCTTATTTATTATTGTA AATAATATTCTTCACATTGAAAGTGAGGTAAAGAAATATCTTAAAACAAA CAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000611XLOC_000611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001085-exon-sc0000007-1575043694:72743..72795TCONS_00001085-exon-sc0000007-1575043694:72743..72795Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:72510..72542TCONS_00001085-exon-sc0000007-1575043694:72510..72542Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:72057..72193TCONS_00001085-exon-sc0000007-1575043694:72057..72193Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:70900..71267TCONS_00001085-exon-sc0000007-1575043694:70900..71267Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:70487..70709TCONS_00001085-exon-sc0000007-1575043694:70487..70709Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:69663..69742TCONS_00001085-exon-sc0000007-1575043694:69663..69742Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:69103..69241TCONS_00001085-exon-sc0000007-1575043694:69103..69241Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:65140..65280TCONS_00001085-exon-sc0000007-1575043694:65140..65280Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:64530..64611TCONS_00001085-exon-sc0000007-1575043694:64530..64611Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:63149..63239TCONS_00001085-exon-sc0000007-1575043694:63149..63239Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:62896..62972TCONS_00001085-exon-sc0000007-1575043694:62896..62972Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:62500..62757TCONS_00001085-exon-sc0000007-1575043694:62500..62757Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:62216..62361TCONS_00001085-exon-sc0000007-1575043694:62216..62361Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:61482..61617TCONS_00001085-exon-sc0000007-1575043694:61482..61617Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:61212..61356TCONS_00001085-exon-sc0000007-1575043694:61212..61356Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1575043694:60040..60629TCONS_00001085-exon-sc0000007-1575043694:60040..60629Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:72743..72795TCONS_00001085-exon-sc0000007-1510915933:72743..72795Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:72510..72542TCONS_00001085-exon-sc0000007-1510915933:72510..72542Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:72057..72193TCONS_00001085-exon-sc0000007-1510915933:72057..72193Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:70900..71267TCONS_00001085-exon-sc0000007-1510915933:70900..71267Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:70487..70709TCONS_00001085-exon-sc0000007-1510915933:70487..70709Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:69663..69742TCONS_00001085-exon-sc0000007-1510915933:69663..69742Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:69103..69241TCONS_00001085-exon-sc0000007-1510915933:69103..69241Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:65140..65280TCONS_00001085-exon-sc0000007-1510915933:65140..65280Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:64530..64611TCONS_00001085-exon-sc0000007-1510915933:64530..64611Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:63149..63239TCONS_00001085-exon-sc0000007-1510915933:63149..63239Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:62896..62972TCONS_00001085-exon-sc0000007-1510915933:62896..62972Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:62500..62757TCONS_00001085-exon-sc0000007-1510915933:62500..62757Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:62216..62361TCONS_00001085-exon-sc0000007-1510915933:62216..62361Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:61482..61617TCONS_00001085-exon-sc0000007-1510915933:61482..61617Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:61212..61356TCONS_00001085-exon-sc0000007-1510915933:61212..61356Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1510915933:60040..60629TCONS_00001085-exon-sc0000007-1510915933:60040..60629Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:72743..72795TCONS_00001085-exon-sc0000007-1491911889:72743..72795Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:72510..72542TCONS_00001085-exon-sc0000007-1491911889:72510..72542Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:72057..72193TCONS_00001085-exon-sc0000007-1491911889:72057..72193Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:70900..71267TCONS_00001085-exon-sc0000007-1491911889:70900..71267Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:70487..70709TCONS_00001085-exon-sc0000007-1491911889:70487..70709Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:69663..69742TCONS_00001085-exon-sc0000007-1491911889:69663..69742Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:69103..69241TCONS_00001085-exon-sc0000007-1491911889:69103..69241Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:65140..65280TCONS_00001085-exon-sc0000007-1491911889:65140..65280Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:64530..64611TCONS_00001085-exon-sc0000007-1491911889:64530..64611Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:63149..63239TCONS_00001085-exon-sc0000007-1491911889:63149..63239Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:62896..62972TCONS_00001085-exon-sc0000007-1491911889:62896..62972Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:62500..62757TCONS_00001085-exon-sc0000007-1491911889:62500..62757Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:62216..62361TCONS_00001085-exon-sc0000007-1491911889:62216..62361Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:61482..61617TCONS_00001085-exon-sc0000007-1491911889:61482..61617Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:61212..61356TCONS_00001085-exon-sc0000007-1491911889:61212..61356Clytia hemisphaericaexon
TCONS_00001085-exon-sc0000007-1491911889:60040..60629TCONS_00001085-exon-sc0000007-1491911889:60040..60629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:60040..72795 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000265624 4.28437e-10 0.067217 0.408412 6.48683 0.155374 2.48086 2.48872 3.50981 7.0602 2.49146 1.77769 2.6061 2.79468 5.8309 3.51406 1.63765e-07 0.738226 3.73828e-06 3.01822e-06 1.33729 0.0335615 0.0139084 0.000242951 0.31863 1.03832 3.26853e-07 2.26321 2.61853e-06 0.000113729
Blast
BLAST of TCONS_00001085 vs. Swiss-Prot (Human)
Match: PTPRB (Receptor-type tyrosine-protein phosphatase beta OS=Homo sapiens GN=PTPRB PE=1 SV=3)

HSP 1 Score: 315.079 bits (806), Expect = 1.235e-89
Identity = 182/456 (39.91%), Postives = 261/456 (57.24%), Query Frame = 3
Query:  711 SAAKFLNIKLG-----ISKDCTKVDQEICNGPLTPSTNYSIQLEVF----------FTNGTSLTTPSSKPWSTLQKAVIVPQEGVRSSXXXXXXXXXXXXXXXXXXXXXXXXCRKKRSRKYLRGQQDKDSMGVSLMSTNYQRNGASRLKKKFSGPDILTERRKSLKGMTRPVFIRDFRAWVERSASDSTFRFAEEFESIRDVGKFERHEVADMAENNGKNRYVNVLPYDYTRVKLSSIDDEPGSDYINANYIHGYKQPRAYIATQGPLPSTTDHFWQMVWEQKSRIIVMVTQCNEKNRVKCHQYWPAS-GSTRYGEIEVTLKHETIYPEWTEREFLMTFEGE---SRLLRHFQYTAWPDHGVPRSSKEMLQFVTTVR--FHQRPDDGPVICHCSAGVGRTGTYLCVDILVNKLQTENNVDVYGVVCLMRTQRCSMVQTEDQYIFIHRVILDYLKQR 2015
            S +K  NIKLG     +   C    Q+ C+GPL P T Y I +  F          FT      T  S P +T  + +    EGV + + +I + V +V  +          CR+K S       +++ S  +S+           R  +  S    L   +K  +  + P+ I  F     +  +DS +  ++E+E ++DVG+ +  ++A + EN GKNRY N+LPYD TRVKLS++DD+P SDYINA+YI G    R YI TQGPLP T D FW+MVWEQ    IVMVTQC EK RVKC  YWPA   S  YG++ + +  E++ PEWT REF +  E +    RL+RHF YT WPDHGVP +++ ++QFV TVR   ++ P  GP + HCSAGVGRTGT++ +D ++ +L ++++VD+YG V  +R  R  MVQTE QY+++H+ + D L+ R
Sbjct: 1539 SNSKSFNIKLGAEMESLGGKCDPTQQKFCDGPLKPHTAYRISIRAFTQLFDEDLKEFTKPLYSDTFFSLPITTESEPLFGAIEGVSAGLFLIGMLVAVVALLI---------CRQKVSHG-----RERPSARLSI-----------RRDRPLSVH--LNLGQKGNRKTSCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRAR 1967          
The following BLAST results are available for this feature:
BLAST of TCONS_00001085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTPRB1.235e-8939.91Receptor-type tyrosine-protein phosphatase beta OS... [more]
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