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TCONS_00001084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001084
Unique NameTCONS_00001084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001084 ID=TCONS_00001084|Name=TCONS_00001084|organism=Clytia hemisphaerica|type=transcript|length=2708bp
GTTTTATAGAGTTCATCTAATACTTATTAAGCGTATAATATATATTCATT
TCACAAAAAGCTATGGTGATGCTTCTGCTTGCCATTTGGTTTTATGGTAT
AACAGCAACAACGATACAGAATGAATTTTCATCCACTTTTACATCCATCG
AACTTGCTTCGATTTCTCCATCCGCCAGTTCGATGAAAACCAACACCCTA
AATGAACCTTCCCGAACACCACCCACTCAAAGctCCCTGGAGCACACGTC
AACTGTTGCTACAAATTATTTGGTGACGCCCAACAATCTCGCAACATCGC
AGTCAGACTCGCCAACATCCGCAAAAGCTATGACCACTGATTCAAAGAGT
TCGTCTCCTAAGAACATTCAACCAAGCACATCTACGAGAGAAATAGTCTC
ATTGACAACCTCCATTATATCCCTACCACCATCAAGAAAACCCTCCACTA
CTCAACAACCAACCACAACCACAACGCAACCACCTTTGCCAGCATTTAAG
CAAAATATTGATGATACCAGTATATTTGTTTTGCTACCTTTGTCTTATCC
TGTCGACAGCTGGGAAGAGATCACTGTTTATGTCGTCATTCCTTCACTTG
GTTACAAGTCAACGGGCTCATGGTACAGAATTTTcatcaagaaagaaaaa
cacgACCGTTACCCTGCACTTGTCATGAAGCCCAAGCAACTTTCGAACGA
TCCACGTCGAAAAAGAAGAAGTGCAGCCAAATTCTTGAACATCAAACTTG
GCATCAGTAAAGACTGTACTAAAGTCGATCAAGAGATTTGTAATGGTCCT
CTAACTCCCTCAACTAACTACAGTATTCAGTTGGAAGTCTTCTTCACCAA
TGGAACATCTTTGACAACCCCCTCCTCAAAACCCTGGTCTACTTTACAAA
AAGcGGTGATCGTGCCACAAGAAGGTGTTCGTTCATCTGTCGTCATCATC
ATCCTCACCGTCCTTCTCGTCTTCTTCATCTTTCTCACCATCATCATCAC
AATCATCGTCTGCCGTAAGAAACGATCACGAAAATATCTCAGAGGGCAGC
AAGACAAGGACAGTATGGGTGTGTCCCTCATGTCCACCAACTATCAGAGG
AATGGGGCGAGCAGGTTGAAGAAGAAATTCTCAGGACCAGATATTCTCAC
TGAGcgacgaaaaagtctgaaaggAATGACGAGACCTGTCTTCATCCGAG
ATTTTCGTGCATGGGTTGAAAGAAGTGCATCGGATAGTACCTTTCGTTTT
GCCGAAGAATTTGAGTCTATACGGGATGTCGGGAAATTTGAGAGGCATGA
AGTTGCTGACATGGCAGAAAATAACGGCAAAAACCGATACGTCAACGTCT
TACCATACGATTATACGCGAGTGAAACTATCGAGTATAGACGACGAACCT
GGTTCGGACTATATCAACGCTAATTATATTCACGGTTACAAGCAACCACG
AGCATACATAGCCACACAAGGACCCCTCCCAAGTACCACAGACCACTTCT
GGCAGATGGTCTGGGAACAAAAATCTCGAATCATTGTCATGGTTACGCAA
TGCAATGAGAAGAATCGTGTAAAATGTCATCAATATTGGCCTGCATCAGG
TTCGACGCGATACGGAGAAATCGAAGTAACGCTTAAGCACGAAACAATAT
ATCCAGAATGGACCGAACGGGAATTTCTAATGACATTCGAGggCGAATCT
CGATTACTCAGACATTTTCAATACACAGCATGGCCTGACCACGGCGTACC
TCGCTCATCTAAAGAAATGTTACAGTTCGTGACGACCGTTCGGTTTCATC
AACGGCCCGATGACGGCCCTGTCATCTGTCATTGCTCgGCGGGAGTTGGG
CGCACAGGAACTTACTTGTGTGTTGATATTCTGGTCAATAAACTACAGAC
CGAAAACAATGTAGATGTTTATGGTGTAGTGTGTTTAATGAGGACTCAAC
GATGCTCCATGGTGCAGACTGAGGACCAATACATCTTCATTCACCGAGTC
ATATTGGACTATTTGAAACAACGTGACGAAAAGCAACAAATCTTTTCCGG
ATATTCGACCTTAGAAATGCGAAGGAAAAGTAAAAGTGAATCCAATCCTG
TCGAACCTGCGGCTGAAGCATTattgaaagaagaagaaaaagaagacgaG
GAAGATGAAAATCTggataatgatgatgatgaaacgAAATCTGACGATTT
TCTTTCCGAAGAATTCGAGAACAGCGATTTAGAAACACCTCCTGTATAAT
ACGCATACTACCTCTTCATATTTgtagacttttttttgactttatgtTGT
GTAGAAAGAAAATGGATGCCCTTTTATCGGGTAGGATTTCATCTTAACAA
GTGATGATCAAATATCACTCACCATGCATCTCCCTCATACTTCGttcttt
aaaacatttttattgtaatttctttttaaatggaAATTGTAAATAGGTAC
actagaaatttaatttttattttgaaattttatataaaTAGCGAGAGATA
ATATTAGTCTACTTTATTGTTATATTCTTCTTGGTTTACTTTCGTTGAAT
TCTTTCAAGATACCGATTGGCATAAGAAGAAGCTTTCTTTTTTGGGGGCT
AAAGAAAACAAGATGATAATATAATAATTTTGTGTTCTTATTTATTATTG
TAAATAATATTCTTCACATTGAAAGTGAGGTAAAGAAATAtcttaaaaca
aacaaaag
Run BLAST on NCBI

transcript from alignment at sc0000007:60040..72703-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001084 ID=TCONS_00001084|Name=TCONS_00001084|organism=Clytia hemisphaerica|type=transcript|length=12664bp|location=Sequence derived from alignment at sc0000007:60040..72703- (Clytia hemisphaerica)
GTTTTATAGAGTTCATCTAATACTTATTAAGCGTATAATATATATTCATT TCACAAAAAGCTGTAAGTCTTATCATTCATATCGCTTTCATTTTTTATAT GTTGTATGAACAGTTAAGAGAGGGGTGTCGTATACTGAACTTTTTTGGTT TTCTTTCTTAGATGGTGATGCTTCTGCTTGCCATTTGGTTTTATGTAAGT TTTCGTTTCTTTTTCATTCTTCGCATTCTCAGAATATATTTTTGTAATTC TTCAGGAAGTCTGGATTAGTTAAAATAAAATGTCTACGTGATGGTATTCT ATAGTATGTCTCGAGACACGCCCTTTTATATAAGATCCTGACCCGTGAAT AGCTACTTATATTTTGGGCAACGGGTTGGTATGATATGTGCAGCGAAAAA TAGTAAAACGATAATTGTTCCCGTTTCGTTGAACCAGGAAATTTAGAACA AGGAAATTTAATGATCCATCACTTCTTGGAATGAATTACTGATTTTTTCG TTTCCTTCAGGGTATAACAGCAACAACGATACAGAATGAATTTTCATCCA CTTTTACATCCATCGAACTTGCTTCGATTTCTCCATCCGCCAGTTCGATG AAAACCAACACCCTAAATGAACCTTCCCGAACACCACCCACTCAAAGGTA TAGCTCCTCAATGAACATCATTGCTGAAAGACTGGAAACAAGTAACCTAT CAATAGACATGACTGTACGAACTTTTATATCAACAACTAAATTGATAATG GTACCTGACTTTTCTACAGACATGAACGTTAAAGAATCACCAACAACATC TATAGACTTTTCAACATCACAACTCGTGACTGACTTACAAACTTCTATAT CAAGTGATCGTCAAACAAACTCATCCACAGACCTTTCTATAACAGCACTG GACATGTTGTCTTCTATGAAGACCTCACAATTTCAAACAGAGTTTTCCAC GCACTTTCTTGACAGCTCTTCGCCATTTTCTTCTTCATCTTCTCCCATTG AAAAGTCTCTTTACTCTTCTTCGATTGCTTTGCCGTCCTCACTTTCATCT TCCTACCTCTTATTTTCTACCTCTGTTAGTTCCCAGTTCTCTAGCTTTTC TTCAAGCATTTCTCCCAGTGTACCTTACAGTGTTTCTGCCAGCACCTCCT CGTCAACCATTATCAGATCAGCTGAAGTGGAACCTTCTTCAAACATCATT TCAACTTTACGGGCTTTCTCCACTGTTGACAGAAGCTACTCGTCATATGA AGCTTCTTCGCAACCATCAAACGTTGACAGTTTTTTAACATTACAAACGA CCAACTTTGACGCTTCTTCAATCTTACAACAATCAACAACATCAGAAAAG ACAGCTTTAACGACTGAATCTGTGGTAACCTCTACCCTCCAGTTATCCTC CCAACCCTTCCATAGATCCTTTGATATTTTTTCAAGCTCCCTGGAGCACA CGTCAACTGTTGCTACAAATTATTTGGTGACGCCCAACAATCTCGCAACA TCGCAGTCAGACTCGCCAACATCCGCAAAAGCTATGACCACTGATTCAAA GAGTTCGTCTCCTAAGAACATTCAACCAAGCACATCTACGAGAGAAATAG TCTCATTGACAACCTCCATTATATCCCTACCACCATCAAGAAAACCCTCC ACTACTCAACAACCAACCACAACCACAACGCAACCACCTTTGCCAGCATT TAAGCAAAATATTGATGATACCAGTATATTTGTTTTGCTACCTTTGTCTT ATCCTGTCGACAGCTGGGAAGAGATCACTGTTTATGTCGTCATTCCTTCA CTTGGTAAGTCACTAATTCTTTTTGTAAATTTTGAGATTTTTATTTCTTT TTGCCACATTTTCTTTCATGTATTCAATTTCGTAATTTCGTATTTAAGAA AAATTTAAGCATGCAAAAAAGTAGTATCTACGAAAATGTAAAAGGTAACA GTCCTAGTGTCCCTACGGCTATAAAGATACATATTTTTATACAGGTTACA AGTCAACGGGCTCATGGTACAGAATTTTCATCAAGAAAGAAAAACACGAC CGTTACCCTGCACTTGTCATGAAGCCCAAGCAACTTTCGAACGATCCACG TCGAAAAAGAAGAAGTGCAGCCAAATTCTTGAACATCAAACTTGGCATCA GTAAAGACTGTACTAAAGTCGATCAAGAGATTTGTAATGGTCCTCTAACT CCCTCAACTAACTACAGGTTTTACTTAAGTCTGTTCCAAAAAACTCCGTA CTTTACACATTGCTCTCACGGGAAAAAAATATAACTAAAAGTAATTAATA CCTTTTTGAAAAGATAATTTTAGCAGCTCGATGTGAGCTTTAAAGAATTT TCTAAGGATTTGAAAATGAAGATGAAAAGTGAAAGAAAAAATGAAGATTT TTCTACTCGGTAATATCTTTTCTGAAACAGCGCTGATTTCAAGTAAGTAT TCAGTTTTTCTTTTTGGTAAAGAGTTATAGCCTCTTGTCCATTTCGATCG TTTCTAGCAATTTATGGCCTATTTTGACCTTTCTCGGAGGCTTGTGGTTT TCGATCGAAAAGTGATATAAAAGATCTTATAAAAAATCTTTCTAAGGAGG TATTACTTTTAGCTATATCTTTTCACTATATCTTTTCACCTAAAGAGGAC TTTTAGACCAAACTTTACAAGAAGTCTTTTTTTGTTGAGAAATATTGCGT AATAATTTCAAGACTACTCCCTCTCAGGTTTTCATTTATATTTTCGTCCA ATGTATGAAAGACAACCCTCAAAGTTATATTTTCACTATTTTGAACCCAC ATGAAGTGGTAAAAGAAGGGAGACACACCCATCCTGAAGATCTAATTCAA TTTCACAATAAGTTGTTATTGACAAATAGAGACATGGGTATGATAAATAT TCTCTTTGATCAAGTGCAGATGTTTTCGAAGATGTATTAAACTTCTATTT TGTTCGTTTAGTATTCAGTTGGAAGTCTTCTTCACCAATGGAACATCTTT GACAACCCCCTCCTCAAAACCCTGGTCTACTTTACAAAAAGGTTGGTAAC TTTTTTTTTTATTTCCTCCTTTGCTAGTTTCTTCTCCAGTAATCTCGTAT TCAGATATTACCTTGTTTTGTGATTGAGCTCTCCGAGTAAATGTTTGTAC AACCCGGGACGAAGATATTATTTTTCCCTGTCAACTAATGCCGTTGTCTA GGGAGGCGGTGACTTGTTTCGTGGGAGGTTTATCACTTACAAATCTGTGT TTTGGAAGAACCAAAACAATGTACGCAAGGTTTGATATGAAGGCCTGCTC AAGATCAATAATGAACGGCTTTATGAAACTATTTTGTTAATATCACGAGA AGCCTTCAGTTAATTTTTGATTTTGATTTGATTTTTTTTANATGGCCAGT TCATTTTTTTTATTTCGATTCTTGAGGAGTGTGTTCTATAAAATTTGATT TTTTTCTTCCAGCGGTGATCGTGCCACAAGAAGGTGTTCGTTCATCTGTC GTCATCATCATCCTCACCGTCCTTCTCGTCTTCTTCATCTTTCTCACCAT CATCATCACAATCATCGTCTGCCGTAAGAAACGATCACGAAAATATCTCA GGTATGTATCTTACGTGTTTCAACCTCTTTTCGTCATTTTTTTTTAGGCC CCTCCCAAGTGTTACCAACTATTCTTCGTTAATATTTTTTTAATGAATTA TGAATTTTATGAGACAGTCCTTGAAACAATCGGTGTTCTTCACTGATCTG AAAGAAAAAAGCTTCCATTAGAGTATAGCAAAAAAAGGTCCTCCGATCCT TCCTACGAGCAGTTCATTTTGTACTACAACCAGGAAATGGACTATATCCA GAATAATTTGAATTAAACAGGGAAATTATATAACAATTAATGGACATCCT CTCCAAGGGTAGCAGTGCTTTTGCAGCTTGCCGTTACTATATTCAATTTA TAGACATACAGCTAACTGTGGTATTTTGTAGCAGGTTCTCTCTTTGAAAT GTAGATTTTATATAAATTAAATGTTTATATGTCACTTCAATAAACCTTCT ATCATTTGCAAAGCTATGTTTCTTGGCGTCAGTTTGTTTGCGATTTCTTA AAACGATCGATTAACCTCTATGTCCGTCTTTCATAAGTATGTTGCGATTG ATGTTGGATGGAAGCAGGCACTTTGCATCTTTTTGTGACGGTCGGATGAA TTAAACGCTTTCACGGGCTGAGAAACTCTCATTGTGACGTTCACAGAGAG TGTCAAATAGGTTAAGCCTCGTCATTTGGCACAATGTCCCATCAAAAAGT TTTGATTGATTTTGCAGACGAAATTCTCCAATAAATAGCGCATGCTGGTT ATGTTTTCCATCATTTTCTTTTTAAAATATTGGATTCTGATTGCTTAATC TCATCAAAAAGACTTCATATGGCGCTCTCTTTCCGAAAGAGAAGAAGAGG TTGAAGAAGAAGAGTTTGCTCTTTCAAAACTCCGTCCTCGCTCCTTTATA ACCATTTCCAACTATTGCTTTTGAAATAATTAAGGAGTTTTTAAAGAGTT GTATAATGGAAAAAGAAGGGCTTAAAAAGCTGAAACGAATAGTTTACGAC TAGTTGCTTTTATTTCTGCTGATTGAGAAGTAAAGAAGTCATTTTCTGGG TGAAACATGAAAGGTTGTTTAGGCTAGGCTCTTAATTCGAATATAGATTT ATGGAAACTGGAATTCCTTTCTTTCTCAAAACGGAAATGAAATTAGCATT TGTTGATGATTTGTGTTTTCGATTAACTGGATTGGATTGATTGGATGAAA CCATAAATTTGATGATATAAAACATTAACGACGATTACGTAACTCCTTTT CGCAGCTTTAATTGCATCCGGCGTTTGATTTTAGCACAGTGACAAATTTT ATGTAGTGTGCAATATATTGGTTGGTATTATCAGTACATTTGATAAGCTG CTTCTGCTCATTAACCACCTTCAAACAATTATTCTTCCTTATTCTCTTCG TTTCGTCATTTTCCTGTTTTCGACAAAACACGTGTTTATTTTCGACCATA TTATTGCGAGGATGTTTTCGCGTGAAGCGGTGAAGAAGAAGGAGGATCAA GGGAAGATGTCCTCTGCACTTGCATTTTTTGTAGACGGGATATGTCCTTT TCATCACTTGTACTCGGTATCTTGAATTTTGCGAATGCTTTTCAAATACT TTTTAGAGTAATTTTTAAAGGGAGATAAAATATGCTTTTGCTGTAAAATC GGGTTTTGTTTTGTTGTTGCCTTGACAACAATCATTCCATCAAAATGGCT ACGGCTTATCCCCCTTCCTGGTGCAAAAAAGCGGCGCCAATAATCCCTCT TCTATCTCTATTTAATTAATCCAACATTTTCATTACTTTTTCAAAAGAAG ACTTAATTTGTCTTTTCCTTCTCACTCTTTTAATTTGTTATTTCGGGAGA TGGATATTATATGTTCTTCCTTTGCAAGCTTCAAAACATCAGCACATGAT ATTGCTGCTAATGTCTTTGTTTCGCACCGGCGTAGGAAACTTACTTTTGA TCAATTAAGAAAGACAATAGAATGTAAGAATTGATCTCTTAATGGCTTTG CGTCTCATCAGCCAAAATATTACTTCACTAATTGTCTAATCTTTATCACT TGATGATTTCAACTGGCTTGTGTGTTCTTTAATAGATGTCCTTATGGAAG TTGTTTGCGGAGAGTCAACGGAGTTAGAAGTACTTTAGTAAAGTCAATGT TTACACATTATGTAATGTGGCGAGAACGTCCTTCTTTAATTTTAGCGAAT GATATCATGGGAATTTGCGACCGTTATTTTTTTGTGTGTTTTTGTGATGA GTTGTACATCATTTTTGGTCTTTCGTGTTTAAGCGTCACTGAGGGGTAAT GAAAGTTCACTTTCAGATCTTTTGATACAGAAGGGGGGAACATTCTGGTT GGGCGTTTGATTGTTTTGTTTGAGACATGGATTAAATGGGAATGGAAGGG AATTCAGCTGCTTCGTTGAGTTTTCACGTTTACACATCATCATAGAGAGA CACATGCACCTTCTCATTTCATTTTCAACCTCAAAGAAAAGAAAACAGAA AGAAAGGGAATATTTCTCAATAATTATTTCTTCTCCAACATCTTCATATA TTACATCGTATTCATTTTTTCCAAAACATGTGTCTGTTTGTCTTCTCTAT TTTTCTTCTTTCTTTCTTCTTCTTTCCATTTCTCGACTTGAACACTCTTC CCTCTCATCACAACGTTCAAGTGAAAGAGTGATCTGTTTCTTTCTCGACT GAACAGCACAGCAAGACTNTGAACACTCTTCCCTCTCATCACAACACAAC GTTCAAGTGAAAGAGTGATCTGTTTCTTTCTCGACTGAACAACACAGCAA GACTCTCACGATGTGTTCCGAAGCACCCTCAAACTACCGAAGACGTCGTT TTCAAATGTGCTTCTGCTTAGTGTAAGTCTTTACTTCCCTTTTCAACCTT TTTTTCCTTTCTTTCTGTTTTCATGCAGGGCTTTAGAGGTGGTGAATTTC CTCTGTTTTCATCGCGGAAATCTAGTTTCTTTTTCTGATTTTGAACACCC AAAAGATAATGGAGGAAGGGTGATTTCCACCATCGGTACTTTCCGACTGA TGTTGTTGTGTGGGCTTCTCTTGAGTTCAGTGGGTAGTTCATCCTATGGA AAGCAATAGGAACAAAATACAACAAGTCAATGATAGAAATTTTAATTGAC TTATTCACATGGTTAGGTGAACTTTCTTTTTGTGATGAGTACTTTTATAA AAAGAGAAAGTCGAAGCTTTATTAAACTGTCTTGATCCTGTATTATAATG TTTATTTTGAACATGAGACAAAGAGAAGTGTATGAATCATGCGAGAAGTT AGTGACATCTCTTCAATTATAAATAACATTCTTACTTCAAAGCATTCACA CCACACTTCTATCGAAATTCATACACTGTATTTAAAACAAGTTGAATGTT GCATTCTGTAACTTCGCAATGAAGAAGAAAATTTGCTGTTGATTTTCCTT TTATGGTGTTTGTATGTGTTGAATGATTGGTTTCTGCTTTGACGTGCTTC CATCTCTGACTGAGAATCAATGTCTCATTTCATTCAAATGACATACTTTG CACTCACACAAGTCTTCTAACTGCTTTTACTGTGTATTATATTTATTAGT TGCAAAAAATTAAAAACAAAGGGATCATTTTTGAAGATATGCGGATGTAC GACTTGGTGGACGAGAACAATGTGTTGTTTGACAAGCAAACCATCAAACG ACACAATAGTCGTGAACTGAACAACAATGAACCCGCTCTTCTCCGAAGAA CTGTTTCTTTTTCCAACACCATAAGGTGTAAATGTTCAAAACTCTTAACT TTAACACCCCATCTTCACCGTAGAGGGCAGCAAGACAAGGACAGTATGGG TGTGTCCCTCATGTCCACCAACTATCAGAGGAATGGGGCGAGCAGGTTGA AGAAGAAATTCTCAGGACCAGATATTCTCACTGAGCGACGAAAAAGTCTG AAAGGAATGACGAGGTAAGTGTTTTCTCTTTTTTCTAATTTTTAGATCAT GGCCGTTTGTTTATTTTTTCGAGTTTGAGCGAAACTGTTTTGTCTGAACG AGATATGTCACACTCTGAAGGGTTTCCGTCAATAGTCAATAGACTGACGG GTTTTCGGGACTTTTAAAATAATGATATTTTCCAAACAATCAGCCTGCAT TAACTATATATGATGATGTCATCATTAGGTAATGTTAAAATGCATAATTT ATTACCGACGGCCCGAACTGAGTGATAGGAAGATAATAAACGCAATAACA AATATAGAAATCGTTTTATCTTTACATCGAACATGCAATTTCACAAACAT TCTTCTGATAAGAGAGGTAGCAAGCCATGTTTCAAGATAAGGCCTTTTGT TTCGCATTTTTAATAAGCATTTGAACACCCCTCGACGTGATGTATCGCTT GATTAATGATACCGTTGTAAATATAAAAGCCTGTCAAAGTGTCATTCTTC ATAATATGTTGTTTTCATAATGTATTTTCGTTTGTTTGTCAGACCTGTCT TCATCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGCATCGGATAGTACC TTTCGTTTTGCCGAAGAATTTGAGGTATGATGTTACCCTTTCACCACCAC TTTCACAAGTTTGTGTCAAAAATGACAAACGTGAACTTTTGGAAATTAAC CTTTACTTATATCTTCCCTTTCATTAATATTTGTAATAACCAAACAAGTT GACCATTTACACGCCATAATTTCTGTACAACATTTTTTTGGATGTTATTC AAAATGGGACGGAACGTCTAATTAATGATCATTAAGTCTTTTTAAGCCAT CCTTAATATTACACAATTTCTTCTAATTATAACTTTCTTAATGTTTATCT TTCAGTCTATACGGGATGTCGGGAANATGTTTCAATCTTTAAAGCATTAA AAGCTTTATAAATCTTTAAAGCATTAAAAGCTTTATAAGTGCATGTCATG ACCTTTCAGTGGGGGCATTTAGTGAAAGCTATGACTAGTTTAGATTTTAG ATCATGGCCGTTTGTTTATTTTTTCGAGTTTGAGCGAAACTGTTTTGTCT GAACGAGATATGTCACATTCATTCTGAAGGGTTTCCGTCAATAGTCAATA GACTGACGGGTTTGCGGGACTTTTAAAATAATGATATTTTCCAAACAATC AGCCTGTATTAACTATATATGATGATGTCATCATTAGGTAATGTTAAAAT GCATAATTTATTACCGACGGCCCGAAACTGAGTGATAGGAAGATAATAAA CGCAATAACAAATATAGGCATCGTTTTATCTTTACATCGAACATGCAATT TCACAAACATTCTTCTGATAAGAGAGGTAGCAAGCCATGTTTCAAGATAA GGCCTTTTGTTTCGCATTTTTAATAAGCATTTGAACACCCCTCGACGTGT GTATCGCTTGATTAATGATACCGTTGTAAATATAAAAGCCTGTCAAAGTG TCATTCTTCATATGCTCTTATTTTCATAATGTATTTTCGTTTGTTTGTCA GACCTGTCTTCATCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGCATCG GATAGTACCTTTCGTTTTGCCGAAGAATTTGAGGTATGATGTTACCCTTT CACCACCACTTTCACAAGTTTGTGTCAAAAATGACAAACGTGAACTTTTG GAAATTAACCTTTACTTATATCTTCCCTTTCATTAATATTTGTAATAACC AAACAAGTTGACCATTTACACGCCATAATTTCTGTACAACATTTTTTTGG ATGTTATTCAAAATGGGACGGAACGTCTAATTAATGATCATTAAGTCTTT TTAAGCCATCCTTAATATTACACAATTTCTTCTAATTATAACTTTCTTAA TGTTTATCTTTCAGTCTATACGGGATGTCGGGAAATTTGAGAGGCATGAA GTTGCTGACATGGCAGAAAATAACGGCAAAAACCGATACGTCAACGTCTT ACCATGTAAGTCAAGTTTCGTTTTAGGAAAATTTTTGGCTCTGAATTGAA TTTATGATTCTTTCCTTAAAGAGAGATTTTTAGAAATGTAGAAATTTTTT CTTGGTATTTCCTGTGATGTGACCACCATGCAGTCTTTATAGAATTTCTC CTTATTAATCATCTGTATTTTGGTTTACCAGACGATTATACGCGAGTGAA ACTATCGAGTATAGACGACGAACCTGGTTCGGACTATATCAACGCTAATT ATATTCACGTGAGTTGTTGTGCATTCATCAATTTTAGCTTTTTGGATTAT TATTTTTTCAAGATAATTTTTTAACTTGCCATACCGGATCTGTTTTACAG CGGAAACAAATCAGACTTTAATACGGTTAGAATTTCGTCTTTGTAGGGTT ACAAGCAACCACGAGCATACATAGCCACACAAGGACCCCTCCCAAGTACC ACAGACCACTTCTGGCAGATGGTCTGGGAACAAAAATCTCGAATCATTGT CATGGTTACGCAATGCAATGAGAAGAATCGTGTAAAATGTCATCAATATT GGCCTGCATCAGGTTCGACGCGATACGGAGAAATCGAAGTAACGCTTAAG CACGAAACAATATATCCAGAATGGACCGAACGGGAATTTCTAATGACATT CGAGGTGAGGAAAACTTCCCACGTTTTCTTGAACAGTTGATATTGGGTTG TCTGGTTCTCACTCTTTTAACGACGTTTATGGAGAAATATTCGTCTCCTA TTAATAACATGAATAAAAACAATATCTTTTATTATTTTAAAGGGCGAATC TCGATTACTCAGACATTTTCAATACACAGCATGGCCTGACCACGGCGTAC CTCGCTCATCTAAAGAAATGTTACAGTTCGTGACGACCGTTCGGTTTCAT CAACGGCCCGATGACGGCCCTGTCATCTGTCATTGCTCGTAAGTTCTCTC CTCTTCACTTGCAGTAAATGACGTCATTTGTTTTCTTTCGGTTTTTAGAA CAGCTCGGTAACGTAAAGGGTGAAGGGGTTGTATTTTTAGATTGGGAAAT TAAACTTATTAAAAGAAGTTCTTAAAAATTTATCTTGTTCGTGCCTCCTT AACTTTTCATGCCAACCTATCTTAATTCGGAGCAATTTTCCTTAATGATA ATTTCCTACACTTTTCTTGAATAGTTTCCTCATTAAATTTAATCAGAAAA TTCATGACAATCGGTTAAACCAGCTTAACGCAACCCATTAGATAAATTGC ACAATTTCGTGGTGGTGAATAACCAAGGGTAGCCATTCTTTCACACAACC AATATTTACTGCGACGCTGTTAAACGCTTTTTTTCGTAATTTCTACACAC ACCAAACCTCAAAAAACCCCTGACATACTTAACTTTATACTAGTTCTTTT ACGGTCTGTAAGTGTTCAAAATCTCATTAATCAAGCCTTGTTGTAAACGA TTGTAGGGACATAAGATGCCATAACTTACTGCATCCTGTTATGACATAAT ATTAAGTAACAATTAATTATTTTGTTTGTGTTTTAGGGCGGGAGTTGGGC GCACAGGAACTTACTTGTGTGTTGATATTCTGGTCAATAAACTACAGACC GAAAACAATGTAGATGTTTATGGTGTAGTGTGTTTAATGAGGACTCAACG ATGCTCCATGGTGCAGACTGAGGTAATGAAATACAGACCACATTTTTAAG CATCTTCAAAACCTAATCTTTATTCAACATTTTTACAAACCTACTGTTTT CTAGAATTGTACTCTATACTAAAATATAGGATTGCTTTTACTTTCAGGAC CAATACATCTTCATTCACCGAGTCATATTGGACTATTTGAAACAACGTGA CGAAAAGCAACAAATCTTTTCCGGATATTCGACCTTAGAAATGCGAAGGA AAAGTAAAAGTGAATCCAATCCTGTCGAACCTGCGGCTGAAGGTACGTTT CAAGTTTGTTTTGATAAGTAATCCTCAAGAACTGTCTTCTCAGAACGCAA AAACCGTAGATCAAGAATAAACATAACGAATTCGAGAAAGAAACAAATCG TTTTTTGTTGGAACTTGATCAGACTTGTTTCATAATTCTGTCTTCTCAGA ATGTAAAAACCATAGACCTCATCAGATTTGATATAAAAAAATCAATCAAC AAATAAACAATTTTCTAAGAAATCATAACGAACTCGTGAAAGAAACAAAT CATTTTTGTTGGCACTTGATCAAATTTGTTTCATAATCTGTATGTTATCA TATACAATCAGGTTTTTTACTCAATTAAGTTCGCATTACAGATCGTCTGA TCTTTCGGTGAATTACCGTGACGTCATAATAGATCACGCTGGTCTTTGAT GGGAATCAGTATTAGGAAATCGCAGTTTACAAATTTATCAAGAAATTAAG AAAAGCAATTCGATTATAAAATCTGTGATATCTTATCCCCCTGATTTCTC CATATAAATGCAACATTGTTTGGTGAGAATTCAGCCTTTGTTCATCCCTT AATTATTTTTTCTCTCATCTTCAGCATTATTGAAAGAAGAAGAAAAAGAA GACGAGGAAGATGAAAATCTGGATAATGATGATGATGAAACGAAATCTGA CGATTTTCTTTCCGAAGAATTCGAGAACAGCGATTTAGAAACACCTCCTG TATAATACGCATACTACCTCTTCATATTTGTAGACTTTTTTTTGACTTTA TGTTGTGTAGAAAGAAAATGGATGCCCTTTTATCGGGTAGGATTTCATCT TAACAAGTGATGATCAAATATCACTCACCATGCATCTCCCTCATACTTCG TTCTTTAAAACATTTTTATTGTAATTTCTTTTTAAATGGAAATTGTAAAT AGGTACACTAGAAATTTAATTTTTATTTTGAAATTTTATATAAATAGCGA GAGATAATATTAGTCTACTTTATTGTTATATTCTTCTTGGTTTACTTTCG TTGAATTCTTTCAAGATACCGATTGGCATAAGAAGAAGCTTTCTTTTTTG GGGGCTAAAGAAAACAAGATGATAATATAATAATTTTGTGTTCTTATTTA TTATTGTAAATAATATTCTTCACATTGAAAGTGAGGTAAAGAAATATCTT AAAACAAACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000611XLOC_000611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001084-exon-sc0000007-1575043694:72642..72703TCONS_00001084-exon-sc0000007-1575043694:72642..72703Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:72510..72542TCONS_00001084-exon-sc0000007-1575043694:72510..72542Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:72057..72193TCONS_00001084-exon-sc0000007-1575043694:72057..72193Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:70900..71267TCONS_00001084-exon-sc0000007-1575043694:70900..71267Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:70487..70709TCONS_00001084-exon-sc0000007-1575043694:70487..70709Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:69663..69742TCONS_00001084-exon-sc0000007-1575043694:69663..69742Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:69103..69241TCONS_00001084-exon-sc0000007-1575043694:69103..69241Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:65140..65280TCONS_00001084-exon-sc0000007-1575043694:65140..65280Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:63521..63602TCONS_00001084-exon-sc0000007-1575043694:63521..63602Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:63149..63239TCONS_00001084-exon-sc0000007-1575043694:63149..63239Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:62896..62972TCONS_00001084-exon-sc0000007-1575043694:62896..62972Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:62500..62757TCONS_00001084-exon-sc0000007-1575043694:62500..62757Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:62216..62361TCONS_00001084-exon-sc0000007-1575043694:62216..62361Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:61482..61617TCONS_00001084-exon-sc0000007-1575043694:61482..61617Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:61212..61356TCONS_00001084-exon-sc0000007-1575043694:61212..61356Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1575043694:60040..60629TCONS_00001084-exon-sc0000007-1575043694:60040..60629Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:72642..72703TCONS_00001084-exon-sc0000007-1510915933:72642..72703Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:72510..72542TCONS_00001084-exon-sc0000007-1510915933:72510..72542Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:72057..72193TCONS_00001084-exon-sc0000007-1510915933:72057..72193Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:70900..71267TCONS_00001084-exon-sc0000007-1510915933:70900..71267Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:70487..70709TCONS_00001084-exon-sc0000007-1510915933:70487..70709Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:69663..69742TCONS_00001084-exon-sc0000007-1510915933:69663..69742Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:69103..69241TCONS_00001084-exon-sc0000007-1510915933:69103..69241Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:65140..65280TCONS_00001084-exon-sc0000007-1510915933:65140..65280Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:63521..63602TCONS_00001084-exon-sc0000007-1510915933:63521..63602Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:63149..63239TCONS_00001084-exon-sc0000007-1510915933:63149..63239Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:62896..62972TCONS_00001084-exon-sc0000007-1510915933:62896..62972Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:62500..62757TCONS_00001084-exon-sc0000007-1510915933:62500..62757Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:62216..62361TCONS_00001084-exon-sc0000007-1510915933:62216..62361Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:61482..61617TCONS_00001084-exon-sc0000007-1510915933:61482..61617Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:61212..61356TCONS_00001084-exon-sc0000007-1510915933:61212..61356Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1510915933:60040..60629TCONS_00001084-exon-sc0000007-1510915933:60040..60629Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:72642..72703TCONS_00001084-exon-sc0000007-1491911889:72642..72703Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:72510..72542TCONS_00001084-exon-sc0000007-1491911889:72510..72542Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:72057..72193TCONS_00001084-exon-sc0000007-1491911889:72057..72193Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:70900..71267TCONS_00001084-exon-sc0000007-1491911889:70900..71267Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:70487..70709TCONS_00001084-exon-sc0000007-1491911889:70487..70709Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:69663..69742TCONS_00001084-exon-sc0000007-1491911889:69663..69742Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:69103..69241TCONS_00001084-exon-sc0000007-1491911889:69103..69241Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:65140..65280TCONS_00001084-exon-sc0000007-1491911889:65140..65280Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:63521..63602TCONS_00001084-exon-sc0000007-1491911889:63521..63602Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:63149..63239TCONS_00001084-exon-sc0000007-1491911889:63149..63239Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:62896..62972TCONS_00001084-exon-sc0000007-1491911889:62896..62972Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:62500..62757TCONS_00001084-exon-sc0000007-1491911889:62500..62757Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:62216..62361TCONS_00001084-exon-sc0000007-1491911889:62216..62361Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:61482..61617TCONS_00001084-exon-sc0000007-1491911889:61482..61617Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:61212..61356TCONS_00001084-exon-sc0000007-1491911889:61212..61356Clytia hemisphaericaexon
TCONS_00001084-exon-sc0000007-1491911889:60040..60629TCONS_00001084-exon-sc0000007-1491911889:60040..60629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:60040..72703 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00761239 1.03911e-09 0.00047608 0.004574 5.16757 7.82913 4.91042 14.8523 2.90853 3.84264 2.71835 3.52751 8.5787e-05 1.73406 3.32701 5.00728 2.47235e-05 1.71374 1.7436 1.1423 7.58978e-07 0.00212374 0.00600231 2.29174e-05 14.6216 11.3947 1.31105e-08 4.6643 2.2088e-07 1.22059e-05
Blast
BLAST of TCONS_00001084 vs. Swiss-Prot (Human)
Match: PTPRB (Receptor-type tyrosine-protein phosphatase beta OS=Homo sapiens GN=PTPRB PE=1 SV=3)

HSP 1 Score: 315.079 bits (806), Expect = 1.303e-89
Identity = 182/456 (39.91%), Postives = 261/456 (57.24%), Query Frame = 3
Query:  720 SAAKFLNIKLG-----ISKDCTKVDQEICNGPLTPSTNYSIQLEVF----------FTNGTSLTTPSSKPWSTLQKAVIVPQEGVRSSXXXXXXXXXXXXXXXXXXXXXXXXCRKKRSRKYLRGQQDKDSMGVSLMSTNYQRNGASRLKKKFSGPDILTERRKSLKGMTRPVFIRDFRAWVERSASDSTFRFAEEFESIRDVGKFERHEVADMAENNGKNRYVNVLPYDYTRVKLSSIDDEPGSDYINANYIHGYKQPRAYIATQGPLPSTTDHFWQMVWEQKSRIIVMVTQCNEKNRVKCHQYWPAS-GSTRYGEIEVTLKHETIYPEWTEREFLMTFEGE---SRLLRHFQYTAWPDHGVPRSSKEMLQFVTTVR--FHQRPDDGPVICHCSAGVGRTGTYLCVDILVNKLQTENNVDVYGVVCLMRTQRCSMVQTEDQYIFIHRVILDYLKQR 2024
            S +K  NIKLG     +   C    Q+ C+GPL P T Y I +  F          FT      T  S P +T  + +    EGV + + +I + V +V  +          CR+K S       +++ S  +S+           R  +  S    L   +K  +  + P+ I  F     +  +DS +  ++E+E ++DVG+ +  ++A + EN GKNRY N+LPYD TRVKLS++DD+P SDYINA+YI G    R YI TQGPLP T D FW+MVWEQ    IVMVTQC EK RVKC  YWPA   S  YG++ + +  E++ PEWT REF +  E +    RL+RHF YT WPDHGVP +++ ++QFV TVR   ++ P  GP + HCSAGVGRTGT++ +D ++ +L ++++VD+YG V  +R  R  MVQTE QY+++H+ + D L+ R
Sbjct: 1539 SNSKSFNIKLGAEMESLGGKCDPTQQKFCDGPLKPHTAYRISIRAFTQLFDEDLKEFTKPLYSDTFFSLPITTESEPLFGAIEGVSAGLFLIGMLVAVVALLI---------CRQKVSHG-----RERPSARLSI-----------RRDRPLSVH--LNLGQKGNRKTSCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRAR 1967          
The following BLAST results are available for this feature:
BLAST of TCONS_00001084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTPRB1.303e-8939.91Receptor-type tyrosine-protein phosphatase beta OS... [more]
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