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TCONS_00001083 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001083
Unique NameTCONS_00001083
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2879

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001083 ID=TCONS_00001083|Name=TCONS_00001083|organism=Clytia hemisphaerica|type=transcript|length=2879bp
TATAATATATATTCATTTCACAAAAAGCTATGGTGATGCTTCTGCTTGCC
ATTTGGTTTTATGGTATAACAGCAACAACGATACAGAATGAATTTTCATC
CACTTTTACATCCATCGAACTTGCTTCGATTTCTCCATCCGCCAGTTCGA
TGAAAACCAACACCCTAAATGAACCTTCCCGAACACCACCCACTCAAAGA
AGCTACTCGTCATATGAAGCTTCTTCGCAACCATCAAACGTTGACAGTTT
TTTAACATTACAAACGACCAACTTTGACGCTTCTTCAATCTTACAACAAT
CAACAACATCAGAAAAGACAGCTTTAACGACTGAATCTGTGGTAACCTCT
ACCCTCCAGTTATCCTCCCAACCCTTCCATAGAtcctttgatattttttc
aagctCCCTGGAGCACACGTCAACTGTTGCTACAAATTATTTGGTGACGC
CCAACAATCTCGCAACATCGCAGTCAGACTCGCCAACATCCGCAAAAGCT
ATGACCACTGATTCAAAGAGTTCGTCTCCTAAGAACATTCAACCAAGCAC
ATCTACGAGAGAAATAGTCTCATTGACAACCTCCATTATATCCCTACCAC
CATCAAGAAAACCCTCCACTACTCAACAACCAACCACAACCACAACGCAA
CCACCTTTGCCAGCATTTAAGCAAAATATTGATGATACCAGTATATTTGT
TTTGCTACCTTTGTCTTATCCTGTCGACAGCTGGGAAGAGATCACTGTTT
ATGTCGTCATTCCTTCACTTGGTTACAAGTCAACGGGCTCATGGTACAGA
ATTTTcatcaagaaagaaaaacacgACCGTTACCCTGCACTTGTCATGAA
GCCCAAGCAACTTTCGAACGATCCACGTCGAAAAAGAAGAAGTGCAGCCA
AATTCTTGAACATCAAACTTGGCATCAGTAAAGACTGTACTAAAGTCGAT
CAAGAGATTTGTAATGGTCCTCTAACTCCCTCAACTAACTACAGTATTCA
GTTGGAAGTCTTCTTCACCAATGGAACATCTTTGACAACCCCCTCCTCAA
AACCCTGGTCTACTTTACAAAAAGcGGTGATCGTGCCACAAGAAGGTGTT
CGTTCATCTGTCGTCATCATCATCCTCACCGTCCTTCTCGTCTTCTTCAT
CTTTCTCACCATCATCATCACAATCATCGTCTGCCGTAAGAAACGATCAC
GAAAATATCTCAGAGGGCAGCAAGACAAGGACAGTATGGGTGTGTCCCTC
ATGTCCACCAACTATCAGAGGAATGGGGCGAGCAGGTTGAAGAAGAAATT
CTCAGGACCAGATATTCTCACTGAGcgacgaaaaagtctgaaaggAATGA
CGAGACCTGTCTTCATCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGCA
TCGGATAGTACCTTTCGTTTTGCCGAAGAATTTGAGTCTATACGGGATGT
CGGGAAATTTGAGAGGCATGAAGTTGCTGACATGGCAGAAAATAACGGCA
AAAACCGATACGTCAACGTCTTACCATACGATTATACGCGAGTGAAACTA
TCGAGTATAGACGACGAACCTGGTTCGGACTATATCAACGCTAATTATAT
TCACGGTTACAAGCAACCACGAGCATACATAGCCACACAAGGACCCCTCC
CAAGTACCACAGACCACTTCTGGCAGATGGTCTGGGAACAAAAATCTCGA
ATCATTGTCATGGTTACGCAATGCAATGAGAAGAATCGTGTAAAATGTCA
TCAATATTGGCCTGCATCAGGTTCGACGCGATACGGAGAAATCGAAGTAA
CGCTTAAGCACGAAACAATATATCCAGAATGGACCGAACGGGAATTTCTA
ATGACATTCGAGggCGAATCTCGATTACTCAGACATTTTCAATACACAGC
ATGGCCTGACCACGGCGTACCTCGCTCATCTAAAGAAATGTTACAGTTCG
TGACGACCGTTCGGTTTCATCAACGGCCCGATGACGGCCCTGTCATCTGT
CATTGCTCgGCGGGAGTTGGGCGCACAGGAACTTACTTGTGTGTTGATAT
TCTGGTCAATAAACTACAGACCGAAAACAATGTAGATGTTTATGGTGTAG
TGTGTTTAATGAGGACTCAACGATGCTCCATGGTGCAGACTGAGGACCAA
TACATCTTCATTCACCGAGTCATATTGGACTATTTGAAACAACGTGACGA
AAAGCAACAAATCTTTTCCGGATATTCGACCTTAGAAATGCGAAGGAAAA
GTAAAAGTGAATCCAATCCTGTCGAACCTGCGGCTGAAGCATTattgaaa
gaagaagaaaaagaagacgaGGAAGATGAAAATCTggataatgatgatga
tgaaacgAAATCTGACGATTTTCTTTCCGAAGAATTCGAGAACAGCGATT
TAGAAACACCTCCTGTATAATACGCATACTACCTCTTCATATTTgtagac
ttttttttgactttatgtTGTGTAGAAAGAAAATGGATGCCCTTTTATCG
GGTAGGATTTCATCTTAACAAGTGATGATCAAATATCACTCACCATGCAT
CTCCCTCATACTTCGttctttaaaacatttttattgtaatttctttttaa
atggaAATTGTAAATAGGTACactagaaatttaatttttattttgaaatt
ttatataaaTAGCGAGAGATAATATTAGTCTACTTTATTGTTATATTCTT
CTTGGTTTACTTTCGTTGAATTCTTTCAAGATACCGATTGGCATAAGAAG
AAGCTTTCTTTTTTGGGGGCTAAAGAAAACAAGATGATAATATAATAATT
TTGTGTTCTTATTTATTATTGTAAATAATATTCTTCACATTGAAAGTGAG
GTAAAGAAATAtcttaaaacaaacaaaag
Run BLAST on NCBI

transcript from alignment at sc0000007:60040..72670-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001083 ID=TCONS_00001083|Name=TCONS_00001083|organism=Clytia hemisphaerica|type=transcript|length=12631bp|location=Sequence derived from alignment at sc0000007:60040..72670- (Clytia hemisphaerica)
TATAATATATATTCATTTCACAAAAAGCTGTAAGTCTTATCATTCATATC GCTTTCATTTTTTATATGTTGTATGAACAGTTAAGAGAGGGGTGTCGTAT ACTGAACTTTTTTGGTTTTCTTTCTTAGATGGTGATGCTTCTGCTTGCCA TTTGGTTTTATGTAAGTTTTCGTTTCTTTTTCATTCTTCGCATTCTCAGA ATATATTTTTGTAATTCTTCAGGAAGTCTGGATTAGTTAAAATAAAATGT CTACGTGATGGTATTCTATAGTATGTCTCGAGACACGCCCTTTTATATAA GATCCTGACCCGTGAATAGCTACTTATATTTTGGGCAACGGGTTGGTATG ATATGTGCAGCGAAAAATAGTAAAACGATAATTGTTCCCGTTTCGTTGAA CCAGGAAATTTAGAACAAGGAAATTTAATGATCCATCACTTCTTGGAATG AATTACTGATTTTTTCGTTTCCTTCAGGGTATAACAGCAACAACGATACA GAATGAATTTTCATCCACTTTTACATCCATCGAACTTGCTTCGATTTCTC CATCCGCCAGTTCGATGAAAACCAACACCCTAAATGAACCTTCCCGAACA CCACCCACTCAAAGGTATAGCTCCTCAATGAACATCATTGCTGAAAGACT GGAAACAAGTAACCTATCAATAGACATGACTGTACGAACTTTTATATCAA CAACTAAATTGATAATGGTACCTGACTTTTCTACAGACATGAACGTTAAA GAATCACCAACAACATCTATAGACTTTTCAACATCACAACTCGTGACTGA CTTACAAACTTCTATATCAAGTGATCGTCAAACAAACTCATCCACAGACC TTTCTATAACAGCACTGGACATGTTGTCTTCTATGAAGACCTCACAATTT CAAACAGAGTTTTCCACGCACTTTCTTGACAGCTCTTCGCCATTTTCTTC TTCATCTTCTCCCATTGAAAAGTCTCTTTACTCTTCTTCGATTGCTTTGC CGTCCTCACTTTCATCTTCCTACCTCTTATTTTCTACCTCTGTTAGTTCC CAGTTCTCTAGCTTTTCTTCAAGCATTTCTCCCAGTGTACCTTACAGTGT TTCTGCCAGCACCTCCTCGTCAACCATTATCAGATCAGCTGAAGTGGAAC CTTCTTCAAACATCATTTCAACTTTACGGGCTTTCTCCACTGTTGACAGA AGCTACTCGTCATATGAAGCTTCTTCGCAACCATCAAACGTTGACAGTTT TTTAACATTACAAACGACCAACTTTGACGCTTCTTCAATCTTACAACAAT CAACAACATCAGAAAAGACAGCTTTAACGACTGAATCTGTGGTAACCTCT ACCCTCCAGTTATCCTCCCAACCCTTCCATAGATCCTTTGATATTTTTTC AAGCTCCCTGGAGCACACGTCAACTGTTGCTACAAATTATTTGGTGACGC CCAACAATCTCGCAACATCGCAGTCAGACTCGCCAACATCCGCAAAAGCT ATGACCACTGATTCAAAGAGTTCGTCTCCTAAGAACATTCAACCAAGCAC ATCTACGAGAGAAATAGTCTCATTGACAACCTCCATTATATCCCTACCAC CATCAAGAAAACCCTCCACTACTCAACAACCAACCACAACCACAACGCAA CCACCTTTGCCAGCATTTAAGCAAAATATTGATGATACCAGTATATTTGT TTTGCTACCTTTGTCTTATCCTGTCGACAGCTGGGAAGAGATCACTGTTT ATGTCGTCATTCCTTCACTTGGTAAGTCACTAATTCTTTTTGTAAATTTT GAGATTTTTATTTCTTTTTGCCACATTTTCTTTCATGTATTCAATTTCGT AATTTCGTATTTAAGAAAAATTTAAGCATGCAAAAAAGTAGTATCTACGA AAATGTAAAAGGTAACAGTCCTAGTGTCCCTACGGCTATAAAGATACATA TTTTTATACAGGTTACAAGTCAACGGGCTCATGGTACAGAATTTTCATCA AGAAAGAAAAACACGACCGTTACCCTGCACTTGTCATGAAGCCCAAGCAA CTTTCGAACGATCCACGTCGAAAAAGAAGAAGTGCAGCCAAATTCTTGAA CATCAAACTTGGCATCAGTAAAGACTGTACTAAAGTCGATCAAGAGATTT GTAATGGTCCTCTAACTCCCTCAACTAACTACAGGTTTTACTTAAGTCTG TTCCAAAAAACTCCGTACTTTACACATTGCTCTCACGGGAAAAAAATATA ACTAAAAGTAATTAATACCTTTTTGAAAAGATAATTTTAGCAGCTCGATG TGAGCTTTAAAGAATTTTCTAAGGATTTGAAAATGAAGATGAAAAGTGAA AGAAAAAATGAAGATTTTTCTACTCGGTAATATCTTTTCTGAAACAGCGC TGATTTCAAGTAAGTATTCAGTTTTTCTTTTTGGTAAAGAGTTATAGCCT CTTGTCCATTTCGATCGTTTCTAGCAATTTATGGCCTATTTTGACCTTTC TCGGAGGCTTGTGGTTTTCGATCGAAAAGTGATATAAAAGATCTTATAAA AAATCTTTCTAAGGAGGTATTACTTTTAGCTATATCTTTTCACTATATCT TTTCACCTAAAGAGGACTTTTAGACCAAACTTTACAAGAAGTCTTTTTTT GTTGAGAAATATTGCGTAATAATTTCAAGACTACTCCCTCTCAGGTTTTC ATTTATATTTTCGTCCAATGTATGAAAGACAACCCTCAAAGTTATATTTT CACTATTTTGAACCCACATGAAGTGGTAAAAGAAGGGAGACACACCCATC CTGAAGATCTAATTCAATTTCACAATAAGTTGTTATTGACAAATAGAGAC ATGGGTATGATAAATATTCTCTTTGATCAAGTGCAGATGTTTTCGAAGAT GTATTAAACTTCTATTTTGTTCGTTTAGTATTCAGTTGGAAGTCTTCTTC ACCAATGGAACATCTTTGACAACCCCCTCCTCAAAACCCTGGTCTACTTT ACAAAAAGGTTGGTAACTTTTTTTTTTATTTCCTCCTTTGCTAGTTTCTT CTCCAGTAATCTCGTATTCAGATATTACCTTGTTTTGTGATTGAGCTCTC CGAGTAAATGTTTGTACAACCCGGGACGAAGATATTATTTTTCCCTGTCA ACTAATGCCGTTGTCTAGGGAGGCGGTGACTTGTTTCGTGGGAGGTTTAT CACTTACAAATCTGTGTTTTGGAAGAACCAAAACAATGTACGCAAGGTTT GATATGAAGGCCTGCTCAAGATCAATAATGAACGGCTTTATGAAACTATT TTGTTAATATCACGAGAAGCCTTCAGTTAATTTTTGATTTTGATTTGATT TTTTTTANATGGCCAGTTCATTTTTTTTATTTCGATTCTTGAGGAGTGTG TTCTATAAAATTTGATTTTTTTCTTCCAGCGGTGATCGTGCCACAAGAAG GTGTTCGTTCATCTGTCGTCATCATCATCCTCACCGTCCTTCTCGTCTTC TTCATCTTTCTCACCATCATCATCACAATCATCGTCTGCCGTAAGAAACG ATCACGAAAATATCTCAGGTATGTATCTTACGTGTTTCAACCTCTTTTCG TCATTTTTTTTTAGGCCCCTCCCAAGTGTTACCAACTATTCTTCGTTAAT ATTTTTTTAATGAATTATGAATTTTATGAGACAGTCCTTGAAACAATCGG TGTTCTTCACTGATCTGAAAGAAAAAAGCTTCCATTAGAGTATAGCAAAA AAAGGTCCTCCGATCCTTCCTACGAGCAGTTCATTTTGTACTACAACCAG GAAATGGACTATATCCAGAATAATTTGAATTAAACAGGGAAATTATATAA CAATTAATGGACATCCTCTCCAAGGGTAGCAGTGCTTTTGCAGCTTGCCG TTACTATATTCAATTTATAGACATACAGCTAACTGTGGTATTTTGTAGCA GGTTCTCTCTTTGAAATGTAGATTTTATATAAATTAAATGTTTATATGTC ACTTCAATAAACCTTCTATCATTTGCAAAGCTATGTTTCTTGGCGTCAGT TTGTTTGCGATTTCTTAAAACGATCGATTAACCTCTATGTCCGTCTTTCA TAAGTATGTTGCGATTGATGTTGGATGGAAGCAGGCACTTTGCATCTTTT TGTGACGGTCGGATGAATTAAACGCTTTCACGGGCTGAGAAACTCTCATT GTGACGTTCACAGAGAGTGTCAAATAGGTTAAGCCTCGTCATTTGGCACA ATGTCCCATCAAAAAGTTTTGATTGATTTTGCAGACGAAATTCTCCAATA AATAGCGCATGCTGGTTATGTTTTCCATCATTTTCTTTTTAAAATATTGG ATTCTGATTGCTTAATCTCATCAAAAAGACTTCATATGGCGCTCTCTTTC CGAAAGAGAAGAAGAGGTTGAAGAAGAAGAGTTTGCTCTTTCAAAACTCC GTCCTCGCTCCTTTATAACCATTTCCAACTATTGCTTTTGAAATAATTAA GGAGTTTTTAAAGAGTTGTATAATGGAAAAAGAAGGGCTTAAAAAGCTGA AACGAATAGTTTACGACTAGTTGCTTTTATTTCTGCTGATTGAGAAGTAA AGAAGTCATTTTCTGGGTGAAACATGAAAGGTTGTTTAGGCTAGGCTCTT AATTCGAATATAGATTTATGGAAACTGGAATTCCTTTCTTTCTCAAAACG GAAATGAAATTAGCATTTGTTGATGATTTGTGTTTTCGATTAACTGGATT GGATTGATTGGATGAAACCATAAATTTGATGATATAAAACATTAACGACG ATTACGTAACTCCTTTTCGCAGCTTTAATTGCATCCGGCGTTTGATTTTA GCACAGTGACAAATTTTATGTAGTGTGCAATATATTGGTTGGTATTATCA GTACATTTGATAAGCTGCTTCTGCTCATTAACCACCTTCAAACAATTATT CTTCCTTATTCTCTTCGTTTCGTCATTTTCCTGTTTTCGACAAAACACGT GTTTATTTTCGACCATATTATTGCGAGGATGTTTTCGCGTGAAGCGGTGA AGAAGAAGGAGGATCAAGGGAAGATGTCCTCTGCACTTGCATTTTTTGTA GACGGGATATGTCCTTTTCATCACTTGTACTCGGTATCTTGAATTTTGCG AATGCTTTTCAAATACTTTTTAGAGTAATTTTTAAAGGGAGATAAAATAT GCTTTTGCTGTAAAATCGGGTTTTGTTTTGTTGTTGCCTTGACAACAATC ATTCCATCAAAATGGCTACGGCTTATCCCCCTTCCTGGTGCAAAAAAGCG GCGCCAATAATCCCTCTTCTATCTCTATTTAATTAATCCAACATTTTCAT TACTTTTTCAAAAGAAGACTTAATTTGTCTTTTCCTTCTCACTCTTTTAA TTTGTTATTTCGGGAGATGGATATTATATGTTCTTCCTTTGCAAGCTTCA AAACATCAGCACATGATATTGCTGCTAATGTCTTTGTTTCGCACCGGCGT AGGAAACTTACTTTTGATCAATTAAGAAAGACAATAGAATGTAAGAATTG ATCTCTTAATGGCTTTGCGTCTCATCAGCCAAAATATTACTTCACTAATT GTCTAATCTTTATCACTTGATGATTTCAACTGGCTTGTGTGTTCTTTAAT AGATGTCCTTATGGAAGTTGTTTGCGGAGAGTCAACGGAGTTAGAAGTAC TTTAGTAAAGTCAATGTTTACACATTATGTAATGTGGCGAGAACGTCCTT CTTTAATTTTAGCGAATGATATCATGGGAATTTGCGACCGTTATTTTTTT GTGTGTTTTTGTGATGAGTTGTACATCATTTTTGGTCTTTCGTGTTTAAG CGTCACTGAGGGGTAATGAAAGTTCACTTTCAGATCTTTTGATACAGAAG GGGGGAACATTCTGGTTGGGCGTTTGATTGTTTTGTTTGAGACATGGATT AAATGGGAATGGAAGGGAATTCAGCTGCTTCGTTGAGTTTTCACGTTTAC ACATCATCATAGAGAGACACATGCACCTTCTCATTTCATTTTCAACCTCA AAGAAAAGAAAACAGAAAGAAAGGGAATATTTCTCAATAATTATTTCTTC TCCAACATCTTCATATATTACATCGTATTCATTTTTTCCAAAACATGTGT CTGTTTGTCTTCTCTATTTTTCTTCTTTCTTTCTTCTTCTTTCCATTTCT CGACTTGAACACTCTTCCCTCTCATCACAACGTTCAAGTGAAAGAGTGAT CTGTTTCTTTCTCGACTGAACAGCACAGCAAGACTNTGAACACTCTTCCC TCTCATCACAACACAACGTTCAAGTGAAAGAGTGATCTGTTTCTTTCTCG ACTGAACAACACAGCAAGACTCTCACGATGTGTTCCGAAGCACCCTCAAA CTACCGAAGACGTCGTTTTCAAATGTGCTTCTGCTTAGTGTAAGTCTTTA CTTCCCTTTTCAACCTTTTTTTCCTTTCTTTCTGTTTTCATGCAGGGCTT TAGAGGTGGTGAATTTCCTCTGTTTTCATCGCGGAAATCTAGTTTCTTTT TCTGATTTTGAACACCCAAAAGATAATGGAGGAAGGGTGATTTCCACCAT CGGTACTTTCCGACTGATGTTGTTGTGTGGGCTTCTCTTGAGTTCAGTGG GTAGTTCATCCTATGGAAAGCAATAGGAACAAAATACAACAAGTCAATGA TAGAAATTTTAATTGACTTATTCACATGGTTAGGTGAACTTTCTTTTTGT GATGAGTACTTTTATAAAAAGAGAAAGTCGAAGCTTTATTAAACTGTCTT GATCCTGTATTATAATGTTTATTTTGAACATGAGACAAAGAGAAGTGTAT GAATCATGCGAGAAGTTAGTGACATCTCTTCAATTATAAATAACATTCTT ACTTCAAAGCATTCACACCACACTTCTATCGAAATTCATACACTGTATTT AAAACAAGTTGAATGTTGCATTCTGTAACTTCGCAATGAAGAAGAAAATT TGCTGTTGATTTTCCTTTTATGGTGTTTGTATGTGTTGAATGATTGGTTT CTGCTTTGACGTGCTTCCATCTCTGACTGAGAATCAATGTCTCATTTCAT TCAAATGACATACTTTGCACTCACACAAGTCTTCTAACTGCTTTTACTGT GTATTATATTTATTAGTTGCAAAAAATTAAAAACAAAGGGATCATTTTTG AAGATATGCGGATGTACGACTTGGTGGACGAGAACAATGTGTTGTTTGAC AAGCAAACCATCAAACGACACAATAGTCGTGAACTGAACAACAATGAACC CGCTCTTCTCCGAAGAACTGTTTCTTTTTCCAACACCATAAGGTGTAAAT GTTCAAAACTCTTAACTTTAACACCCCATCTTCACCGTAGAGGGCAGCAA GACAAGGACAGTATGGGTGTGTCCCTCATGTCCACCAACTATCAGAGGAA TGGGGCGAGCAGGTTGAAGAAGAAATTCTCAGGACCAGATATTCTCACTG AGCGACGAAAAAGTCTGAAAGGAATGACGAGGTAAGTGTTTTCTCTTTTT TCTAATTTTTAGATCATGGCCGTTTGTTTATTTTTTCGAGTTTGAGCGAA ACTGTTTTGTCTGAACGAGATATGTCACACTCTGAAGGGTTTCCGTCAAT AGTCAATAGACTGACGGGTTTTCGGGACTTTTAAAATAATGATATTTTCC AAACAATCAGCCTGCATTAACTATATATGATGATGTCATCATTAGGTAAT GTTAAAATGCATAATTTATTACCGACGGCCCGAACTGAGTGATAGGAAGA TAATAAACGCAATAACAAATATAGAAATCGTTTTATCTTTACATCGAACA TGCAATTTCACAAACATTCTTCTGATAAGAGAGGTAGCAAGCCATGTTTC AAGATAAGGCCTTTTGTTTCGCATTTTTAATAAGCATTTGAACACCCCTC GACGTGATGTATCGCTTGATTAATGATACCGTTGTAAATATAAAAGCCTG TCAAAGTGTCATTCTTCATAATATGTTGTTTTCATAATGTATTTTCGTTT GTTTGTCAGACCTGTCTTCATCCGAGATTTTCGTGCATGGGTTGAAAGAA GTGCATCGGATAGTACCTTTCGTTTTGCCGAAGAATTTGAGGTATGATGT TACCCTTTCACCACCACTTTCACAAGTTTGTGTCAAAAATGACAAACGTG AACTTTTGGAAATTAACCTTTACTTATATCTTCCCTTTCATTAATATTTG TAATAACCAAACAAGTTGACCATTTACACGCCATAATTTCTGTACAACAT TTTTTTGGATGTTATTCAAAATGGGACGGAACGTCTAATTAATGATCATT AAGTCTTTTTAAGCCATCCTTAATATTACACAATTTCTTCTAATTATAAC TTTCTTAATGTTTATCTTTCAGTCTATACGGGATGTCGGGAANATGTTTC AATCTTTAAAGCATTAAAAGCTTTATAAATCTTTAAAGCATTAAAAGCTT TATAAGTGCATGTCATGACCTTTCAGTGGGGGCATTTAGTGAAAGCTATG ACTAGTTTAGATTTTAGATCATGGCCGTTTGTTTATTTTTTCGAGTTTGA GCGAAACTGTTTTGTCTGAACGAGATATGTCACATTCATTCTGAAGGGTT TCCGTCAATAGTCAATAGACTGACGGGTTTGCGGGACTTTTAAAATAATG ATATTTTCCAAACAATCAGCCTGTATTAACTATATATGATGATGTCATCA TTAGGTAATGTTAAAATGCATAATTTATTACCGACGGCCCGAAACTGAGT GATAGGAAGATAATAAACGCAATAACAAATATAGGCATCGTTTTATCTTT ACATCGAACATGCAATTTCACAAACATTCTTCTGATAAGAGAGGTAGCAA GCCATGTTTCAAGATAAGGCCTTTTGTTTCGCATTTTTAATAAGCATTTG AACACCCCTCGACGTGTGTATCGCTTGATTAATGATACCGTTGTAAATAT AAAAGCCTGTCAAAGTGTCATTCTTCATATGCTCTTATTTTCATAATGTA TTTTCGTTTGTTTGTCAGACCTGTCTTCATCCGAGATTTTCGTGCATGGG TTGAAAGAAGTGCATCGGATAGTACCTTTCGTTTTGCCGAAGAATTTGAG GTATGATGTTACCCTTTCACCACCACTTTCACAAGTTTGTGTCAAAAATG ACAAACGTGAACTTTTGGAAATTAACCTTTACTTATATCTTCCCTTTCAT TAATATTTGTAATAACCAAACAAGTTGACCATTTACACGCCATAATTTCT GTACAACATTTTTTTGGATGTTATTCAAAATGGGACGGAACGTCTAATTA ATGATCATTAAGTCTTTTTAAGCCATCCTTAATATTACACAATTTCTTCT AATTATAACTTTCTTAATGTTTATCTTTCAGTCTATACGGGATGTCGGGA AATTTGAGAGGCATGAAGTTGCTGACATGGCAGAAAATAACGGCAAAAAC CGATACGTCAACGTCTTACCATGTAAGTCAAGTTTCGTTTTAGGAAAATT TTTGGCTCTGAATTGAATTTATGATTCTTTCCTTAAAGAGAGATTTTTAG AAATGTAGAAATTTTTTCTTGGTATTTCCTGTGATGTGACCACCATGCAG TCTTTATAGAATTTCTCCTTATTAATCATCTGTATTTTGGTTTACCAGAC GATTATACGCGAGTGAAACTATCGAGTATAGACGACGAACCTGGTTCGGA CTATATCAACGCTAATTATATTCACGTGAGTTGTTGTGCATTCATCAATT TTAGCTTTTTGGATTATTATTTTTTCAAGATAATTTTTTAACTTGCCATA CCGGATCTGTTTTACAGCGGAAACAAATCAGACTTTAATACGGTTAGAAT TTCGTCTTTGTAGGGTTACAAGCAACCACGAGCATACATAGCCACACAAG GACCCCTCCCAAGTACCACAGACCACTTCTGGCAGATGGTCTGGGAACAA AAATCTCGAATCATTGTCATGGTTACGCAATGCAATGAGAAGAATCGTGT AAAATGTCATCAATATTGGCCTGCATCAGGTTCGACGCGATACGGAGAAA TCGAAGTAACGCTTAAGCACGAAACAATATATCCAGAATGGACCGAACGG GAATTTCTAATGACATTCGAGGTGAGGAAAACTTCCCACGTTTTCTTGAA CAGTTGATATTGGGTTGTCTGGTTCTCACTCTTTTAACGACGTTTATGGA GAAATATTCGTCTCCTATTAATAACATGAATAAAAACAATATCTTTTATT ATTTTAAAGGGCGAATCTCGATTACTCAGACATTTTCAATACACAGCATG GCCTGACCACGGCGTACCTCGCTCATCTAAAGAAATGTTACAGTTCGTGA CGACCGTTCGGTTTCATCAACGGCCCGATGACGGCCCTGTCATCTGTCAT TGCTCGTAAGTTCTCTCCTCTTCACTTGCAGTAAATGACGTCATTTGTTT TCTTTCGGTTTTTAGAACAGCTCGGTAACGTAAAGGGTGAAGGGGTTGTA TTTTTAGATTGGGAAATTAAACTTATTAAAAGAAGTTCTTAAAAATTTAT CTTGTTCGTGCCTCCTTAACTTTTCATGCCAACCTATCTTAATTCGGAGC AATTTTCCTTAATGATAATTTCCTACACTTTTCTTGAATAGTTTCCTCAT TAAATTTAATCAGAAAATTCATGACAATCGGTTAAACCAGCTTAACGCAA CCCATTAGATAAATTGCACAATTTCGTGGTGGTGAATAACCAAGGGTAGC CATTCTTTCACACAACCAATATTTACTGCGACGCTGTTAAACGCTTTTTT TCGTAATTTCTACACACACCAAACCTCAAAAAACCCCTGACATACTTAAC TTTATACTAGTTCTTTTACGGTCTGTAAGTGTTCAAAATCTCATTAATCA AGCCTTGTTGTAAACGATTGTAGGGACATAAGATGCCATAACTTACTGCA TCCTGTTATGACATAATATTAAGTAACAATTAATTATTTTGTTTGTGTTT TAGGGCGGGAGTTGGGCGCACAGGAACTTACTTGTGTGTTGATATTCTGG TCAATAAACTACAGACCGAAAACAATGTAGATGTTTATGGTGTAGTGTGT TTAATGAGGACTCAACGATGCTCCATGGTGCAGACTGAGGTAATGAAATA CAGACCACATTTTTAAGCATCTTCAAAACCTAATCTTTATTCAACATTTT TACAAACCTACTGTTTTCTAGAATTGTACTCTATACTAAAATATAGGATT GCTTTTACTTTCAGGACCAATACATCTTCATTCACCGAGTCATATTGGAC TATTTGAAACAACGTGACGAAAAGCAACAAATCTTTTCCGGATATTCGAC CTTAGAAATGCGAAGGAAAAGTAAAAGTGAATCCAATCCTGTCGAACCTG CGGCTGAAGGTACGTTTCAAGTTTGTTTTGATAAGTAATCCTCAAGAACT GTCTTCTCAGAACGCAAAAACCGTAGATCAAGAATAAACATAACGAATTC GAGAAAGAAACAAATCGTTTTTTGTTGGAACTTGATCAGACTTGTTTCAT AATTCTGTCTTCTCAGAATGTAAAAACCATAGACCTCATCAGATTTGATA TAAAAAAATCAATCAACAAATAAACAATTTTCTAAGAAATCATAACGAAC TCGTGAAAGAAACAAATCATTTTTGTTGGCACTTGATCAAATTTGTTTCA TAATCTGTATGTTATCATATACAATCAGGTTTTTTACTCAATTAAGTTCG CATTACAGATCGTCTGATCTTTCGGTGAATTACCGTGACGTCATAATAGA TCACGCTGGTCTTTGATGGGAATCAGTATTAGGAAATCGCAGTTTACAAA TTTATCAAGAAATTAAGAAAAGCAATTCGATTATAAAATCTGTGATATCT TATCCCCCTGATTTCTCCATATAAATGCAACATTGTTTGGTGAGAATTCA GCCTTTGTTCATCCCTTAATTATTTTTTCTCTCATCTTCAGCATTATTGA AAGAAGAAGAAAAAGAAGACGAGGAAGATGAAAATCTGGATAATGATGAT GATGAAACGAAATCTGACGATTTTCTTTCCGAAGAATTCGAGAACAGCGA TTTAGAAACACCTCCTGTATAATACGCATACTACCTCTTCATATTTGTAG ACTTTTTTTTGACTTTATGTTGTGTAGAAAGAAAATGGATGCCCTTTTAT CGGGTAGGATTTCATCTTAACAAGTGATGATCAAATATCACTCACCATGC ATCTCCCTCATACTTCGTTCTTTAAAACATTTTTATTGTAATTTCTTTTT AAATGGAAATTGTAAATAGGTACACTAGAAATTTAATTTTTATTTTGAAA TTTTATATAAATAGCGAGAGATAATATTAGTCTACTTTATTGTTATATTC TTCTTGGTTTACTTTCGTTGAATTCTTTCAAGATACCGATTGGCATAAGA AGAAGCTTTCTTTTTTGGGGGCTAAAGAAAACAAGATGATAATATAATAA TTTTGTGTTCTTATTTATTATTGTAAATAATATTCTTCACATTGAAAGTG AGGTAAAGAAATATCTTAAAACAAACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000611XLOC_000611Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001083-exon-sc0000007-1575043694:72642..72670TCONS_00001083-exon-sc0000007-1575043694:72642..72670Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:72510..72542TCONS_00001083-exon-sc0000007-1575043694:72510..72542Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:72057..72193TCONS_00001083-exon-sc0000007-1575043694:72057..72193Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:70900..71471TCONS_00001083-exon-sc0000007-1575043694:70900..71471Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:70487..70709TCONS_00001083-exon-sc0000007-1575043694:70487..70709Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:69663..69742TCONS_00001083-exon-sc0000007-1575043694:69663..69742Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:69103..69241TCONS_00001083-exon-sc0000007-1575043694:69103..69241Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:65140..65280TCONS_00001083-exon-sc0000007-1575043694:65140..65280Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:63521..63602TCONS_00001083-exon-sc0000007-1575043694:63521..63602Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:63149..63239TCONS_00001083-exon-sc0000007-1575043694:63149..63239Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:62896..62972TCONS_00001083-exon-sc0000007-1575043694:62896..62972Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:62500..62757TCONS_00001083-exon-sc0000007-1575043694:62500..62757Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:62216..62361TCONS_00001083-exon-sc0000007-1575043694:62216..62361Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:61482..61617TCONS_00001083-exon-sc0000007-1575043694:61482..61617Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:61212..61356TCONS_00001083-exon-sc0000007-1575043694:61212..61356Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1575043694:60040..60629TCONS_00001083-exon-sc0000007-1575043694:60040..60629Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:72642..72670TCONS_00001083-exon-sc0000007-1510915933:72642..72670Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:72510..72542TCONS_00001083-exon-sc0000007-1510915933:72510..72542Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:72057..72193TCONS_00001083-exon-sc0000007-1510915933:72057..72193Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:70900..71471TCONS_00001083-exon-sc0000007-1510915933:70900..71471Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:70487..70709TCONS_00001083-exon-sc0000007-1510915933:70487..70709Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:69663..69742TCONS_00001083-exon-sc0000007-1510915933:69663..69742Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:69103..69241TCONS_00001083-exon-sc0000007-1510915933:69103..69241Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:65140..65280TCONS_00001083-exon-sc0000007-1510915933:65140..65280Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:63521..63602TCONS_00001083-exon-sc0000007-1510915933:63521..63602Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:63149..63239TCONS_00001083-exon-sc0000007-1510915933:63149..63239Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:62896..62972TCONS_00001083-exon-sc0000007-1510915933:62896..62972Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:62500..62757TCONS_00001083-exon-sc0000007-1510915933:62500..62757Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:62216..62361TCONS_00001083-exon-sc0000007-1510915933:62216..62361Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:61482..61617TCONS_00001083-exon-sc0000007-1510915933:61482..61617Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:61212..61356TCONS_00001083-exon-sc0000007-1510915933:61212..61356Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1510915933:60040..60629TCONS_00001083-exon-sc0000007-1510915933:60040..60629Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:72642..72670TCONS_00001083-exon-sc0000007-1491911889:72642..72670Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:72510..72542TCONS_00001083-exon-sc0000007-1491911889:72510..72542Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:72057..72193TCONS_00001083-exon-sc0000007-1491911889:72057..72193Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:70900..71471TCONS_00001083-exon-sc0000007-1491911889:70900..71471Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:70487..70709TCONS_00001083-exon-sc0000007-1491911889:70487..70709Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:69663..69742TCONS_00001083-exon-sc0000007-1491911889:69663..69742Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:69103..69241TCONS_00001083-exon-sc0000007-1491911889:69103..69241Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:65140..65280TCONS_00001083-exon-sc0000007-1491911889:65140..65280Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:63521..63602TCONS_00001083-exon-sc0000007-1491911889:63521..63602Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:63149..63239TCONS_00001083-exon-sc0000007-1491911889:63149..63239Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:62896..62972TCONS_00001083-exon-sc0000007-1491911889:62896..62972Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:62500..62757TCONS_00001083-exon-sc0000007-1491911889:62500..62757Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:62216..62361TCONS_00001083-exon-sc0000007-1491911889:62216..62361Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:61482..61617TCONS_00001083-exon-sc0000007-1491911889:61482..61617Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:61212..61356TCONS_00001083-exon-sc0000007-1491911889:61212..61356Clytia hemisphaericaexon
TCONS_00001083-exon-sc0000007-1491911889:60040..60629TCONS_00001083-exon-sc0000007-1491911889:60040..60629Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:60040..72670 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 5.85458e-05 0.876582 0.200546 1.5156 5.35962 2.77736 0.764204 0.384803 0.0528404 0.0779665 1.04653 1.40717 1.64866 2.17189 0.633947 5.11374 1.46574 0.000275186 0.0128623 3.82439e-05 0.0155151 2.60262e-07 1.52234e-05 4.49401 0.0597668 0 0.0101021 0.00137591 2.51741e-07
Blast
BLAST of TCONS_00001083 vs. Swiss-Prot (Human)
Match: PTPRB (Receptor-type tyrosine-protein phosphatase beta OS=Homo sapiens GN=PTPRB PE=1 SV=3)

HSP 1 Score: 315.079 bits (806), Expect = 3.456e-89
Identity = 182/456 (39.91%), Postives = 261/456 (57.24%), Query Frame = 3
Query:  891 SAAKFLNIKLG-----ISKDCTKVDQEICNGPLTPSTNYSIQLEVF----------FTNGTSLTTPSSKPWSTLQKAVIVPQEGVRSSXXXXXXXXXXXXXXXXXXXXXXXXCRKKRSRKYLRGQQDKDSMGVSLMSTNYQRNGASRLKKKFSGPDILTERRKSLKGMTRPVFIRDFRAWVERSASDSTFRFAEEFESIRDVGKFERHEVADMAENNGKNRYVNVLPYDYTRVKLSSIDDEPGSDYINANYIHGYKQPRAYIATQGPLPSTTDHFWQMVWEQKSRIIVMVTQCNEKNRVKCHQYWPAS-GSTRYGEIEVTLKHETIYPEWTEREFLMTFEGE---SRLLRHFQYTAWPDHGVPRSSKEMLQFVTTVR--FHQRPDDGPVICHCSAGVGRTGTYLCVDILVNKLQTENNVDVYGVVCLMRTQRCSMVQTEDQYIFIHRVILDYLKQR 2195
            S +K  NIKLG     +   C    Q+ C+GPL P T Y I +  F          FT      T  S P +T  + +    EGV + + +I + V +V  +          CR+K S       +++ S  +S+           R  +  S    L   +K  +  + P+ I  F     +  +DS +  ++E+E ++DVG+ +  ++A + EN GKNRY N+LPYD TRVKLS++DD+P SDYINA+YI G    R YI TQGPLP T D FW+MVWEQ    IVMVTQC EK RVKC  YWPA   S  YG++ + +  E++ PEWT REF +  E +    RL+RHF YT WPDHGVP +++ ++QFV TVR   ++ P  GP + HCSAGVGRTGT++ +D ++ +L ++++VD+YG V  +R  R  MVQTE QY+++H+ + D L+ R
Sbjct: 1539 SNSKSFNIKLGAEMESLGGKCDPTQQKFCDGPLKPHTAYRISIRAFTQLFDEDLKEFTKPLYSDTFFSLPITTESEPLFGAIEGVSAGLFLIGMLVAVVALLI---------CRQKVSHG-----RERPSARLSI-----------RRDRPLSVH--LNLGQKGNRKTSCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRAR 1967          
The following BLAST results are available for this feature:
BLAST of TCONS_00001083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTPRB3.456e-8939.91Receptor-type tyrosine-protein phosphatase beta OS... [more]
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