TCONS_00001082 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001082
Unique Name	TCONS_00001082
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1772

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000007:60040..66337-

transcript sequence

>TCONS_00001082 ID=TCONS_00001082|Name=TCONS_00001082|organism=Clytia hemisphaerica|type=transcript|length=1772bp
GATCTGTTTCTTTCTCGACTGAACAACACAGCAAGACTCTCACGATGTGT
TCCGAAGCACCCTCAAACTACCGAAGACGTCGTTTTCAAATGTGCTTCTG
CTTAGTAGGGCAGCAAGACAAGGACAGTATGGGTGTGTCCCTCATGTCCA
CCAACTATCAGAGGAATGGGGCGAGCAGGTTGAAGAAGAAATTCTCAGGA
CCAGATATTCTCACTGAGcgacgaaaaagtctgaaaggAATGACGAGACC
TGTCTTCATCCGAGATTTTCGTGCATGGGTTGAAAGAAGTGCATCGGATA
GTACCTTTCGTTTTGCCGAAGAATTTGAGTCTATACGGGATGTCGGGAAA
TTTGAGAGGCATGAAGTTGCTGACATGGCAGAAAATAACGGCAAAAACCG
ATACGTCAACGTCTTACCATACGATTATACGCGAGTGAAACTATCGAGTA
TAGACGACGAACCTGGTTCGGACTATATCAACGCTAATTATATTCACGGT
TACAAGCAACCACGAGCATACATAGCCACACAAGGACCCCTCCCAAGTAC
CACAGACCACTTCTGGCAGATGGTCTGGGAACAAAAATCTCGAATCATTG
TCATGGTTACGCAATGCAATGAGAAGAATCGTGTAAAATGTCATCAATAT
TGGCCTGCATCAGGTTCGACGCGATACGGAGAAATCGAAGTAACGCTTAA
GCACGAAACAATATATCCAGAATGGACCGAACGGGAATTTCTAATGACAT
TCGAGggCGAATCTCGATTACTCAGACATTTTCAATACACAGCATGGCCT
GACCACGGCGTACCTCGCTCATCTAAAGAAATGTTACAGTTCGTGACGAC
CGTTCGGTTTCATCAACGGCCCGATGACGGCCCTGTCATCTGTCATTGCT
CgGCGGGAGTTGGGCGCACAGGAACTTACTTGTGTGTTGATATTCTGGTC
AATAAACTACAGACCGAAAACAATGTAGATGTTTATGGTGTAGTGTGTTT
AATGAGGACTCAACGATGCTCCATGGTGCAGACTGAGGACCAATACATCT
TCATTCACCGAGTCATATTGGACTATTTGAAACAACGTGACGAAAAGCAA
CAAATCTTTTCCGGATATTCGACCTTAGAAATGCGAAGGAAAAGTAAAAG
TGAATCCAATCCTGTCGAACCTGCGGCTGAAGCATTattgaaagaagaag
aaaaagaagacgaGGAAGATGAAAATCTggataatgatgatgatgaaacg
AAATCTGACGATTTTCTTTCCGAAGAATTCGAGAACAGCGATTTAGAAAC
ACCTCCTGTATAATACGCATACTACCTCTTCATATTTgtagacttttttt
tgactttatgtTGTGTAGAAAGAAAATGGATGCCCTTTTATCGGGTAGGA
TTTCATCTTAACAAGTGATGATCAAATATCACTCACCATGCATCTCCCTC
ATACTTCGttctttaaaacatttttattgtaatttctttttaaatggaAA
TTGTAAATAGGTACactagaaatttaatttttattttgaaattttatata
aaTAGCGAGAGATAATATTAGTCTACTTTATTGTTATATTCTTCTTGGTT
TACTTTCGTTGAATTCTTTCAAGATACCGATTGGCATAAGAAGAAGCTTT
CTTTTTTGGGGGCTAAAGAAAACAAGATGATAATATAATAATTTTGTGTT
CTTATTTATTATTGTAAATAATATTCTTCACATTGAAAGTGAGGTAAAGA
AATAtcttaaaacaaacaaaag

Run BLAST on NCBI

transcript from alignment at sc0000007:60040..66337-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001082 ID=TCONS_00001082|Name=TCONS_00001082|organism=Clytia hemisphaerica|type=transcript|length=6298bp|location=Sequence derived from alignment at sc0000007:60040..66337- (Clytia hemisphaerica)
GATCTGTTTCTTTCTCGACTGAACAACACAGCAAGACTCTCACGATGTGT
TCCGAAGCACCCTCAAACTACCGAAGACGTCGTTTTCAAATGTGCTTCTG
CTTAGTGTAAGTCTTTACTTCCCTTTTCAACCTTTTTTTCCTTTCTTTCT
GTTTTCATGCAGGGCTTTAGAGGTGGTGAATTTCCTCTGTTTTCATCGCG
GAAATCTAGTTTCTTTTTCTGATTTTGAACACCCAAAAGATAATGGAGGA
AGGGTGATTTCCACCATCGGTACTTTCCGACTGATGTTGTTGTGTGGGCT
TCTCTTGAGTTCAGTGGGTAGTTCATCCTATGGAAAGCAATAGGAACAAA
ATACAACAAGTCAATGATAGAAATTTTAATTGACTTATTCACATGGTTAG
GTGAACTTTCTTTTTGTGATGAGTACTTTTATAAAAAGAGAAAGTCGAAG
CTTTATTAAACTGTCTTGATCCTGTATTATAATGTTTATTTTGAACATGA
GACAAAGAGAAGTGTATGAATCATGCGAGAAGTTAGTGACATCTCTTCAA
TTATAAATAACATTCTTACTTCAAAGCATTCACACCACACTTCTATCGAA
ATTCATACACTGTATTTAAAACAAGTTGAATGTTGCATTCTGTAACTTCG
CAATGAAGAAGAAAATTTGCTGTTGATTTTCCTTTTATGGTGTTTGTATG
TGTTGAATGATTGGTTTCTGCTTTGACGTGCTTCCATCTCTGACTGAGAA
TCAATGTCTCATTTCATTCAAATGACATACTTTGCACTCACACAAGTCTT
CTAACTGCTTTTACTGTGTATTATATTTATTAGTTGCAAAAAATTAAAAA
CAAAGGGATCATTTTTGAAGATATGCGGATGTACGACTTGGTGGACGAGA
ACAATGTGTTGTTTGACAAGCAAACCATCAAACGACACAATAGTCGTGAA
CTGAACAACAATGAACCCGCTCTTCTCCGAAGAACTGTTTCTTTTTCCAA
CACCATAAGGTGTAAATGTTCAAAACTCTTAACTTTAACACCCCATCTTC
ACCGTAGAGGGCAGCAAGACAAGGACAGTATGGGTGTGTCCCTCATGTCC
ACCAACTATCAGAGGAATGGGGCGAGCAGGTTGAAGAAGAAATTCTCAGG
ACCAGATATTCTCACTGAGCGACGAAAAAGTCTGAAAGGAATGACGAGGT
AAGTGTTTTCTCTTTTTTCTAATTTTTAGATCATGGCCGTTTGTTTATTT
TTTCGAGTTTGAGCGAAACTGTTTTGTCTGAACGAGATATGTCACACTCT
GAAGGGTTTCCGTCAATAGTCAATAGACTGACGGGTTTTCGGGACTTTTA
AAATAATGATATTTTCCAAACAATCAGCCTGCATTAACTATATATGATGA
TGTCATCATTAGGTAATGTTAAAATGCATAATTTATTACCGACGGCCCGA
ACTGAGTGATAGGAAGATAATAAACGCAATAACAAATATAGAAATCGTTT
TATCTTTACATCGAACATGCAATTTCACAAACATTCTTCTGATAAGAGAG
GTAGCAAGCCATGTTTCAAGATAAGGCCTTTTGTTTCGCATTTTTAATAA
GCATTTGAACACCCCTCGACGTGATGTATCGCTTGATTAATGATACCGTT
GTAAATATAAAAGCCTGTCAAAGTGTCATTCTTCATAATATGTTGTTTTC
ATAATGTATTTTCGTTTGTTTGTCAGACCTGTCTTCATCCGAGATTTTCG
TGCATGGGTTGAAAGAAGTGCATCGGATAGTACCTTTCGTTTTGCCGAAG
AATTTGAGGTATGATGTTACCCTTTCACCACCACTTTCACAAGTTTGTGT
CAAAAATGACAAACGTGAACTTTTGGAAATTAACCTTTACTTATATCTTC
CCTTTCATTAATATTTGTAATAACCAAACAAGTTGACCATTTACACGCCA
TAATTTCTGTACAACATTTTTTTGGATGTTATTCAAAATGGGACGGAACG
TCTAATTAATGATCATTAAGTCTTTTTAAGCCATCCTTAATATTACACAA
TTTCTTCTAATTATAACTTTCTTAATGTTTATCTTTCAGTCTATACGGGA
TGTCGGGAANATGTTTCAATCTTTAAAGCATTAAAAGCTTTATAAATCTT
TAAAGCATTAAAAGCTTTATAAGTGCATGTCATGACCTTTCAGTGGGGGC
ATTTAGTGAAAGCTATGACTAGTTTAGATTTTAGATCATGGCCGTTTGTT
TATTTTTTCGAGTTTGAGCGAAACTGTTTTGTCTGAACGAGATATGTCAC
ATTCATTCTGAAGGGTTTCCGTCAATAGTCAATAGACTGACGGGTTTGCG
GGACTTTTAAAATAATGATATTTTCCAAACAATCAGCCTGTATTAACTAT
ATATGATGATGTCATCATTAGGTAATGTTAAAATGCATAATTTATTACCG
ACGGCCCGAAACTGAGTGATAGGAAGATAATAAACGCAATAACAAATATA
GGCATCGTTTTATCTTTACATCGAACATGCAATTTCACAAACATTCTTCT
GATAAGAGAGGTAGCAAGCCATGTTTCAAGATAAGGCCTTTTGTTTCGCA
TTTTTAATAAGCATTTGAACACCCCTCGACGTGTGTATCGCTTGATTAAT
GATACCGTTGTAAATATAAAAGCCTGTCAAAGTGTCATTCTTCATATGCT
CTTATTTTCATAATGTATTTTCGTTTGTTTGTCAGACCTGTCTTCATCCG
AGATTTTCGTGCATGGGTTGAAAGAAGTGCATCGGATAGTACCTTTCGTT
TTGCCGAAGAATTTGAGGTATGATGTTACCCTTTCACCACCACTTTCACA
AGTTTGTGTCAAAAATGACAAACGTGAACTTTTGGAAATTAACCTTTACT
TATATCTTCCCTTTCATTAATATTTGTAATAACCAAACAAGTTGACCATT
TACACGCCATAATTTCTGTACAACATTTTTTTGGATGTTATTCAAAATGG
GACGGAACGTCTAATTAATGATCATTAAGTCTTTTTAAGCCATCCTTAAT
ATTACACAATTTCTTCTAATTATAACTTTCTTAATGTTTATCTTTCAGTC
TATACGGGATGTCGGGAAATTTGAGAGGCATGAAGTTGCTGACATGGCAG
AAAATAACGGCAAAAACCGATACGTCAACGTCTTACCATGTAAGTCAAGT
TTCGTTTTAGGAAAATTTTTGGCTCTGAATTGAATTTATGATTCTTTCCT
TAAAGAGAGATTTTTAGAAATGTAGAAATTTTTTCTTGGTATTTCCTGTG
ATGTGACCACCATGCAGTCTTTATAGAATTTCTCCTTATTAATCATCTGT
ATTTTGGTTTACCAGACGATTATACGCGAGTGAAACTATCGAGTATAGAC
GACGAACCTGGTTCGGACTATATCAACGCTAATTATATTCACGTGAGTTG
TTGTGCATTCATCAATTTTAGCTTTTTGGATTATTATTTTTTCAAGATAA
TTTTTTAACTTGCCATACCGGATCTGTTTTACAGCGGAAACAAATCAGAC
TTTAATACGGTTAGAATTTCGTCTTTGTAGGGTTACAAGCAACCACGAGC
ATACATAGCCACACAAGGACCCCTCCCAAGTACCACAGACCACTTCTGGC
AGATGGTCTGGGAACAAAAATCTCGAATCATTGTCATGGTTACGCAATGC
AATGAGAAGAATCGTGTAAAATGTCATCAATATTGGCCTGCATCAGGTTC
GACGCGATACGGAGAAATCGAAGTAACGCTTAAGCACGAAACAATATATC
CAGAATGGACCGAACGGGAATTTCTAATGACATTCGAGGTGAGGAAAACT
TCCCACGTTTTCTTGAACAGTTGATATTGGGTTGTCTGGTTCTCACTCTT
TTAACGACGTTTATGGAGAAATATTCGTCTCCTATTAATAACATGAATAA
AAACAATATCTTTTATTATTTTAAAGGGCGAATCTCGATTACTCAGACAT
TTTCAATACACAGCATGGCCTGACCACGGCGTACCTCGCTCATCTAAAGA
AATGTTACAGTTCGTGACGACCGTTCGGTTTCATCAACGGCCCGATGACG
GCCCTGTCATCTGTCATTGCTCGTAAGTTCTCTCCTCTTCACTTGCAGTA
AATGACGTCATTTGTTTTCTTTCGGTTTTTAGAACAGCTCGGTAACGTAA
AGGGTGAAGGGGTTGTATTTTTAGATTGGGAAATTAAACTTATTAAAAGA
AGTTCTTAAAAATTTATCTTGTTCGTGCCTCCTTAACTTTTCATGCCAAC
CTATCTTAATTCGGAGCAATTTTCCTTAATGATAATTTCCTACACTTTTC
TTGAATAGTTTCCTCATTAAATTTAATCAGAAAATTCATGACAATCGGTT
AAACCAGCTTAACGCAACCCATTAGATAAATTGCACAATTTCGTGGTGGT
GAATAACCAAGGGTAGCCATTCTTTCACACAACCAATATTTACTGCGACG
CTGTTAAACGCTTTTTTTCGTAATTTCTACACACACCAAACCTCAAAAAA
CCCCTGACATACTTAACTTTATACTAGTTCTTTTACGGTCTGTAAGTGTT
CAAAATCTCATTAATCAAGCCTTGTTGTAAACGATTGTAGGGACATAAGA
TGCCATAACTTACTGCATCCTGTTATGACATAATATTAAGTAACAATTAA
TTATTTTGTTTGTGTTTTAGGGCGGGAGTTGGGCGCACAGGAACTTACTT
GTGTGTTGATATTCTGGTCAATAAACTACAGACCGAAAACAATGTAGATG
TTTATGGTGTAGTGTGTTTAATGAGGACTCAACGATGCTCCATGGTGCAG
ACTGAGGTAATGAAATACAGACCACATTTTTAAGCATCTTCAAAACCTAA
TCTTTATTCAACATTTTTACAAACCTACTGTTTTCTAGAATTGTACTCTA
TACTAAAATATAGGATTGCTTTTACTTTCAGGACCAATACATCTTCATTC
ACCGAGTCATATTGGACTATTTGAAACAACGTGACGAAAAGCAACAAATC
TTTTCCGGATATTCGACCTTAGAAATGCGAAGGAAAAGTAAAAGTGAATC
CAATCCTGTCGAACCTGCGGCTGAAGGTACGTTTCAAGTTTGTTTTGATA
AGTAATCCTCAAGAACTGTCTTCTCAGAACGCAAAAACCGTAGATCAAGA
ATAAACATAACGAATTCGAGAAAGAAACAAATCGTTTTTTGTTGGAACTT
GATCAGACTTGTTTCATAATTCTGTCTTCTCAGAATGTAAAAACCATAGA
CCTCATCAGATTTGATATAAAAAAATCAATCAACAAATAAACAATTTTCT
AAGAAATCATAACGAACTCGTGAAAGAAACAAATCATTTTTGTTGGCACT
TGATCAAATTTGTTTCATAATCTGTATGTTATCATATACAATCAGGTTTT
TTACTCAATTAAGTTCGCATTACAGATCGTCTGATCTTTCGGTGAATTAC
CGTGACGTCATAATAGATCACGCTGGTCTTTGATGGGAATCAGTATTAGG
AAATCGCAGTTTACAAATTTATCAAGAAATTAAGAAAAGCAATTCGATTA
TAAAATCTGTGATATCTTATCCCCCTGATTTCTCCATATAAATGCAACAT
TGTTTGGTGAGAATTCAGCCTTTGTTCATCCCTTAATTATTTTTTCTCTC
ATCTTCAGCATTATTGAAAGAAGAAGAAAAAGAAGACGAGGAAGATGAAA
ATCTGGATAATGATGATGATGAAACGAAATCTGACGATTTTCTTTCCGAA
GAATTCGAGAACAGCGATTTAGAAACACCTCCTGTATAATACGCATACTA
CCTCTTCATATTTGTAGACTTTTTTTTGACTTTATGTTGTGTAGAAAGAA
AATGGATGCCCTTTTATCGGGTAGGATTTCATCTTAACAAGTGATGATCA
AATATCACTCACCATGCATCTCCCTCATACTTCGTTCTTTAAAACATTTT
TATTGTAATTTCTTTTTAAATGGAAATTGTAAATAGGTACACTAGAAATT
TAATTTTTATTTTGAAATTTTATATAAATAGCGAGAGATAATATTAGTCT
ACTTTATTGTTATATTCTTCTTGGTTTACTTTCGTTGAATTCTTTCAAGA
TACCGATTGGCATAAGAAGAAGCTTTCTTTTTTGGGGGCTAAAGAAAACA
AGATGATAATATAATAATTTTGTGTTCTTATTTATTATTGTAAATAATAT
TCTTCACATTGAAAGTGAGGTAAAGAAATATCTTAAAACAAACAAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000611	XLOC_000611	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000007	supercontig	sc0000007:60040..66337 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.44692e-06	2.93593e-09	0	0.411787	13.1682	10.7033	38.0938	32.5553	12.3977	9.64303	10.7488	5.78055	19.7809	18.0464	29.5618	31.3972	18.9292	20.8701	25.4417	21.7596	8.21348	15.5855	3.17027	9.70036	11.4544	10.4579	24.2566	20.3338	8.02107	6.46408

Blast

[Close]

BLAST of TCONS_00001082 vs. Swiss-Prot (Human)
Match: PTPRB (Receptor-type tyrosine-protein phosphatase beta OS=Homo sapiens GN=PTPRB PE=1 SV=3)

HSP 1 Score: 305.064 bits (780), Expect = 3.486e-89
Identity = 142/286 (49.65%), Postives = 197/286 (68.88%), Query Frame = 3

Query:  249 PVFIRDFRAWVERSASDSTFRFAEEFESIRDVGKFERHEVADMAENNGKNRYVNVLPYDYTRVKLSSIDDEPGSDYINANYIHGYKQPRAYIATQGPLPSTTDHFWQMVWEQKSRIIVMVTQCNEKNRVKCHQYWPAS-GSTRYGEIEVTLKHETIYPEWTEREFLMTFEGE---SRLLRHFQYTAWPDHGVPRSSKEMLQFVTTVR--FHQRPDDGPVICHCSAGVGRTGTYLCVDILVNKLQTENNVDVYGVVCLMRTQRCSMVQTEDQYIFIHRVILDYLKQR 1088
            P+ I  F     +  +DS +  ++E+E ++DVG+ +  ++A + EN GKNRY N+LPYD TRVKLS++DD+P SDYINA+YI G    R YI TQGPLP T D FW+MVWEQ    IVMVTQC EK RVKC  YWPA   S  YG++ + +  E++ PEWT REF +  E +    RL+RHF YT WPDHGVP +++ ++QFV TVR   ++ P  GP + HCSAGVGRTGT++ +D ++ +L ++++VD+YG V  +R  R  MVQTE QY+++H+ + D L+ R
Sbjct: 1682 PIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSNVDDDPCSDYINASYIPGNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPADQDSLYYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHCSAGVGRTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRAR 1967

The following BLAST results are available for this feature:

BLAST of TCONS_00001082 vs. Swiss-Prot (Human)

BLAST of TCONS_00001082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PTPRB	3.486e-89	49.65	Receptor-type tyrosine-protein phosphatase beta OS...	[more]

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TCONS_00001082 (transcript) - C. hemisphaerica