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TCONS_00001072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001072
Unique NameTCONS_00001072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length881

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001072 ID=TCONS_00001072|Name=TCONS_00001072|organism=Clytia hemisphaerica|type=transcript|length=881bp
TTCTTTcaggtaaaaatcaaaataatggtGTTTTAATAAAGGAAAATTTC
TAATAATGGCTGGTCATGTTTTAAGAAGAAATAGAGGAGCTTTATTCAGT
TTGAGAACAATCTTTCAACAATTTGGAAATTGCACAGAAATTCGTAAGTA
TCAGTTTCACTGATTTCTCTTAAATGTGTGGGTGTGTGTGTGTAGTTTGA
GATTGTTATCTCTACGAATTCCAAAATCTGGCTGGTAATttcttttctcg
aaattcaaCGCTTATTTATTAAAAATGGTATTCAGATGTTTCTGGTTTAT
GTTTCTTTATTTAATTAAATATCTTCTTTACAAGGGATAAATCCCGTgga
gggggggggcactcaagttaaacgacctaccgtaggtgcggcccttaagg
gtcccTTCTCCAAGCTTACCAAATTGCACTGTAAAGGTCTGACTTCAAAg
acctaattttgggccgcacgtatAGTCGTTTTTTAATCGAGTGCCCCACC
CCCACCGGGACAAAATTTGATAAGTAATTTCAGAAATCTTATAATCTTAT
TAATGCAAATCTCAAAAGATTTGAAATATACTCCATAACAAATTATAAAT
TCTTGGATACAAAAAGTCTTACTAACACAATACTTgtcttataaataatt
tttaaattttcataatttattttgcaaacaaaATAANACTTTCGCTATGC
AAAATTAATAATAATGAGCAAATACTAGTTTTACTAAACTAATAAACTTG
TTTTCCTATATTTTGCGGTAAACATTTCCATTACAGAGGACGTAGTAATA
GTGTTGGTATAATTTTCCGTTACACATGTTTGTTTTGGTGGTGGCGATTC
CATTTTGGTAAGTTTGTGATAAAATGTCATA
Run BLAST on NCBI

transcript from alignment at sc0000007:1336123..1337003+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001072 ID=TCONS_00001072|Name=TCONS_00001072|organism=Clytia hemisphaerica|type=transcript|length=881bp|location=Sequence derived from alignment at sc0000007:1336123..1337003+ (Clytia hemisphaerica)
TTCTTTcaggtaaaaatcaaaataatggtGTTTTAATAAAGGAAAATTTC TAATAATGGCTGGTCATGTTTTAAGAAGAAATAGAGGAGCTTTATTCAGT TTGAGAACAATCTTTCAACAATTTGGAAATTGCACAGAAATTCGTAAGTA TCAGTTTCACTGATTTCTCTTAAATGTGTGGGTGTGTGTGTGTAGTTTGA GATTGTTATCTCTACGAATTCCAAAATCTGGCTGGTAATttcttttctcg aaattcaaCGCTTATTTATTAAAAATGGTATTCAGATGTTTCTGGTTTAT GTTTCTTTATTTAATTAAATATCTTCTTTACAAGGGATAAATCCCGTgga gggggggggcactcaagttaaacgacctaccgtaggtgcggcccttaagg gtcccTTCTCCAAGCTTACCAAATTGCACTGTAAAGGTCTGACTTCAAAg acctaattttgggccgcacgtatAGTCGTTTTTTAATCGAGTGCCCCACC CCCACCGGGACAAAATTTGATAAGTAATTTCAGAAATCTTATAATCTTAT TAATGCAAATCTCAAAAGATTTGAAATATACTCCATAACAAATTATAAAT TCTTGGATACAAAAAGTCTTACTAACACAATACTTgtcttataaataatt tttaaattttcataatttattttgcaaacaaaATAANACTTTCGCTATGC AAAATTAATAATAATGAGCAAATACTAGTTTTACTAAACTAATAAACTTG TTTTCCTATATTTTGCGGTAAACATTTCCATTACAGAGGACGTAGTAATA GTGTTGGTATAATTTTCCGTTACACATGTTTGTTTTGGTGGTGGCGATTC CATTTTGGTAAGTTTGTGATAAAATGTCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000605XLOC_000605Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001072-exon-sc0000007-1491911889:1336123..1337003TCONS_00001072-exon-sc0000007-1491911889:1336123..1337003Clytia hemisphaericaexon
TCONS_00001072-exon-sc0000007-1510915933:1336123..1337003TCONS_00001072-exon-sc0000007-1510915933:1336123..1337003Clytia hemisphaericaexon
TCONS_00001072-exon-sc0000007-1575043694:1336123..1337003TCONS_00001072-exon-sc0000007-1575043694:1336123..1337003Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1336123..1337003 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.366583 0.116305 0.131022 0.12824 0 0 0.271501 0.381264 0 0.0593401 0 0 0.0755526 0 0 0 2.81826 6.04623 0 0 38.706 35.6204 0.266682 1.11296 0.454011 0.832428 0 0.135031 0 0.0664926
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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