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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001065 ID=TCONS_00001065|Name=TCONS_00001065|organism=Clytia hemisphaerica|type=transcript|length=1878bp
AGAACAAACCAAACCAGTCCAGTGGCAGAGAGGGGGAGGACACTAATTTT
GTTTTCACCACTCCATACCAACTAAATCAGGAAGAATTTCAGGTGGAATC
TGGTTATGAATCTACTAAACATGTTTGGCAGGAAGCTATATATTCAATTG
AATTGGGGGTGTGAGTTATAtacttttttgaattatttataTCTTTTTAC
AGATGAATTTATGAATAGTGAAGAGAGCCTTCCAAGCACACGACTCTTGA
AAAAGAAACGTTGCTTTGCTGGATGTATATTGCACAACACCAACATCAAT
ATATAGGACCATCAATGTTTTTATATTGGCTTGCTTGGATTAAATATCAT
TTTAAACACTCTTTATCTGGTTTTGGCTCTAAATTGTCTGTTGTTATGAT
TGTAAACTTGATTGTGTTTGGGACTGTTTGTGAAGAAAATTCATCTCTGT
AGTGGAGCTACGTTATATTTATTTAAAGTGAAAGCTTCAAGCTTAACAAT
TTAACCCAAGTTGCTTCTAGCTGTGAAGCTGGATTTATTAATAATTTATA
AGAGCATGGCTGGTGCTCAACCACCAAACGAAAATGAAGAGGAGAAAATT
CGTAGACTAATCCAAGATTTTGTTGGTGAAAGACTTCGGAGGAAAGGTAT
TTCTGTACCTGGCTATGATCAAGAAGAACTTATCAACGAAAATAGTAGCA
TTTCCGAAATTGCATTAACTTTACGAAGAGTTGGTGATGAATTTGAACTG
GCAGCAGATACACAATTTGTTGCAAACATGTGTACAAGACTTTCGATTAC
TCCAAATACTGCTTATCCTATGTTCCAAGCAATATCTGATAAAATTTTTG
CCTCAGGGAAAAACTGGGGGCGAGTTGTAGCTTTTCTGACATTTGGTAGT
TCTTTGGCAGTTCATTGTGCTGAGAAACCTGACATGGGTGTTACGTTTGT
CGATACAATAGTCAGTTGGATCCATCAGTACGTTGTCTCACGCTTGGGGG
AATGGATCAAAGAACAAGGTGGATTGaaagGATTCATGGACTTTTTCAAA
CGCGACCAAGCTCAAAATACGACTCAAAATGGATTCTTAATGTCCGCCCT
AGCGGGTGTAGGATTGGGCGCTTTCCTAATGATGACCTTCAAATAGATCA
AATTGCATGAAATTCAACATCTGTCGGGAGCGGCGACGAAAACGAATCGA
AAAGAATCGGTCAGCGCGACCGAATGATACCGAAAAGTCGAGTtccaaaa
aaaacgaaaataaaagtGGAATTTTGGAACTGTCTCCCGTATCACGAGGC
GCGAGAGTTCTTCTGAATTGACGACGTTGTGTTAGTTTAATTGGAAATTG
GTTATGAcgttttttgaatgtttgatAGACACTGTGGACATCGGGATAAT
GAATGATTTACCAATATGTTGAAAGTAGTATACATAGATAGGAAGTGATT
TCTTACGAGATTTCAGaaagttttcaaattcatcCAGCACTCATGCTGCT
TTTCGTTTTGATTGCGAAACAGTGCGAATCTTATGACTGGTAAACGATTG
ATTTAGCTCTATATTTTTGACGTAActatttgtaaaaaaatcttatatac
ccccacatttttgtttatttttattgctTATATCGATACTCCTATTGCAT
ATTGACTTGCTTGGATCCTGATAATCTTCAAAGCACTACAAGTAATGCTA
GTTCAGTTTAAACTGGGAAACCTGGGAAAACATGAAAGTATCTTAGTTCG
CAAAAGGCTAGGGTCTTGAAGATGATAGGGTGCTAGCAAGTTTAGTGAAA
ATAGGTCTTTAAAACACCAACtcctctcgggtacctaataagcgtccccc
CGCCAAAtaatttctcgaaaattttcca Run BLAST on NCBI transcript from alignment at sc0000007:1257709..1261405+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001065 ID=TCONS_00001065|Name=TCONS_00001065|organism=Clytia hemisphaerica|type=transcript|length=3697bp|location=Sequence derived from alignment at sc0000007:1257709..1261405+ (Clytia hemisphaerica)
AGAACAAACCAAACCAGTCCAGTGGCAGAGAGGGGGAGGACACTAATTTT
GTTTTCACCACTCCATACCAACTAAATCAGGAAGAATTTCAGGTGGAATC
TGGTTATGAATCTACTAAACATGTTTGGCAGGAAGCTATATATTCAATTG
AATTGGGGGTGTGAGTTATAtacttttttgaattatttataTCTTTTTAC
AGATGAATTTATGAATAGTGAAGAGAGCCTTCCAAGCACACGACTCTTGA
AAAAGAAACGTTGCTTTGCTGGATGTATATTGCACAACACCAACATCAAT
ATATAGGACCATCAATGTTTTTATATTGGCTTGCTTGGATTAAATATCAT
TTTAAACACTCTTTATCTGGTTTTGGCTCTAAATTGTCTGTTGTTATGAT
TGTAAACTTGATTGTGTTTGGGACTGTTTGTGAAGAAAATTCATCTCTGT
AGTGGAGCTACGTTATATTTATTTAAAGTGAAAGCTTCAAGCTTAACAAT
TTAACCCAAGTTGCTTCTAGCTGTGAAGCTGGATTTATTAATAATTTATA
AGAGCATGGCTGGTGCTCAACCACCAAACGAAAATGAAGAGGAGAAAATT
CGTAGACTAATCCAAGATTTTGTTGGTGAAAGACTTCGGAGGAAAGGTAT
TTCTGTACCTGGCTATGATCAAGAAGAACTTATCAACGAAAATAGTAGCA
TTTCCGAAATTGCATTAACTTTACGAAGAGTTGGTGATGAATTTGAACTG
GCAGCAGATACACAATTTGTTGCAAACATGTGTACAAGACTTTCGATTAC
TCCAAATACTGCTTATCCTATGTTCCAAGCAATATCTGATAAAATTTTTG
CCTCAGGGAAAAACTGGGGGCGAGTTGTAGCTTTTCTGACATTTGGTAGT
TCTTTGGCAGTTCATTGTGCTGAGAAACCTGACATGGGTGTTACGTTTGT
CGATACAATAGTCAGTTGGATCCATCAGTACGTTGTCTCACGCTTGGGGG
AATGGATCAAAGAACAAGGTGGATTGGTAAGCTTTTTctataaactcaaa
aatctttaccgtgagatcgggtaacttgcatcagtggaggctaacatgca
taaccctcaaatgaatgacctggctggtcattaaaatacaaagttacaac
atcaaaacaaaaatggtagagtagagctgtgagcggaaCCGCgaagttcc
tttgtttttaaattttgctgctttgattggtcagtcatttgatggctatg
caagttaccctccactgatgcaagttacacGACTTCATGGTATATATCAG
GGTATAATGGGTCTAATGGTTTGTTGTCCATTCATTTTAAATAAGTGTAA
GCTGTACCATCATCATTGAGGTTAATTTCATAAGTTTGGAGTAACTTTCT
AAATGTCTAAATCTTGGCCGCTAACAAGCACGTACtacttttatttgaaa
taaggCCTTCTCAATGATTTTTACCATAAAAGTAGATTCTTTACTTACGT
TAGTTTGTCTAATGTCAAAATCCCTCCTAATTCTGACAACCTTCTTTAGA
TATATGAATAAAAGGAAGGTCAGAATTgttgattgaaaaaatttttttcc
tttctgACCAGTATGGTAAGCAAAGAaatagtttcaatcagcgaCTCTGA
CTTTTCTATTATTCCCATCTCTAAAAAGGATTTtagaattagatgaggga
tcaGGAAGGACGTGGACAATAGACCAACTACAGTAGACAAACTTTTGATC
CTGACAGACAAAAATTGACCCTGAGAAGTGGAAAAGATGACTAAAAGTGG
ACctgttttttgagatttaatgATTTTGTCATAATACTTTCAGGGCTTAA
ATAAGTGAGCATGTCAATACCCTTTCCCAAGTGACTCCCTCCCTCAGATA
TCATTTATGATAGTGCTTTAAAAAAGTATTGGGTGTGGTCAAAAGCTTTT
TGtgcaagaaataaaaatacCAGATTTCACGAGTTAAAAAGTGATAATGA
CTGAAAAGAGTGTGAGTGTGAAGAAACATTTATcatgattttttaaagaa
caatcCCTCAATTATTATAGTTCAGTTAGACTGAGGTTTTTGAAGATTAT
TTCTATACATAGATGAGAACATTCTTTTAGCAACACACATTTTGAATATA
ATTGGCTATGAATATTTTCTTAGCATGGGAGATGAATAATCGATGCTTTG
CTATTTAAACTGATAATTGATTTCCTATTGAGCTTTTCAAAACTCTTTCA
AAGATGACTTGAAAGTCTAAAGTACCTTTTGAAAATTGATGTCTCCTTCA
TTTGAGACATACAAAGTCACATGAGATAGTGAACCAACTTTATTCTTTCC
TTGGGTGGTAttcattttaaagtttgtatTGTATGTATAAgacaaaatat
caaataatGAAATCAACTCATATGACTTGACTACAACTAGGTCAGAGGAA
AccccattgtaagggagtgacATTGATAGGAATGCAATGATGAGCTTAAT
AATTTCTTTTATCACAGACTCTCCCCCATAGAtgatttcttgttttttta
tagGACAAAATAAGTATCGtcattatgaaaatatttttatgtaatcCTTT
ATACTGTTTTCGTTGGCCTgctaaaaatcattaaaaaaagacTGTCGCTT
GtcaaaaacatatttgaaaTTCTTGATATATACAATTTCCtatcaaatgt
tttttataattatagACTTGCCCAGTTGAAAAAGCGCTGAAGTAAGGTTC
CCATGAATTGACCCTCCATTGCACAATTATCGTTaatcaaaaacaagttt
tcaTTTCCTGTAAAATCTaatgtttattttatttctcctttttagaaagG
ATTCATGGACTTTTTCAAACGCGACCAAGCTCAAAATACGACTCAAAATG
GATTCTTAATGTCCGCCCTAGCGGGTGTAGGATTGGGCGCTTTCCTAATG
ATGACCTTCAAATAGATCAAATTGCATGAAATTCAACATCTGTCGGGAGC
GGCGACGAAAACGAATCGAAAAGAATCGGTCAGCGCGACCGAATGATACC
GAAAAGTCGAGTtccaaaaaaaacgaaaataaaagtGGAATTTTGGAACT
GTCTCCCGTATCACGAGGCGCGAGAGTTCTTCTGAATTGACGACGTTGTG
TTAGTTTAATTGGAAATTGGTTATGAcgttttttgaatgtttgatAGACA
CTGTGGACATCGGGATAATGAATGATTTACCAATATGTTGAAAGTAGTAT
ACATAGATAGGAAGTGATTTCTTACGAGATTTCAGaaagttttcaaattc
atcCAGCACTCATGCTGCTTTTCGTTTTGATTGCGAAACAGTGCGAATCT
TATGACTGGTAAACGATTGATTTAGCTCTATATTTTTGACGTAActattt
gtaaaaaaatcttatatacccccacatttttgtttatttttattgctTAT
ATCGATACTCCTATTGCATATTGACTTGCTTGGATCCTGATAATCTTCAA
AGCACTACAAGTAATGCTAGTTCAGTTTAAACTGGGAAACCTGGGAAAAC
ATGAAAGTATCTTAGTTCGCAAAAGGCTAGGGTCTTGAAGATGATAGGGT
GCTAGCAAGTTTAGTGAAAATAGGTCTTTAAAACACCAACtcctctcggg
tacctaataagcgtcccccCGCCAAAtaatttctcgaaaattttcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001065-exon-sc0000007-1491911889:1257709..1258734 | TCONS_00001065-exon-sc0000007-1491911889:1257709..1258734 | Clytia hemisphaerica | exon |
| TCONS_00001065-exon-sc0000007-1510915933:1257709..1258734 | TCONS_00001065-exon-sc0000007-1510915933:1257709..1258734 | Clytia hemisphaerica | exon |
| TCONS_00001065-exon-sc0000007-1575043694:1257709..1258734 | TCONS_00001065-exon-sc0000007-1575043694:1257709..1258734 | Clytia hemisphaerica | exon |
| TCONS_00001065-exon-sc0000007-1491911889:1260554..1261405 | TCONS_00001065-exon-sc0000007-1491911889:1260554..1261405 | Clytia hemisphaerica | exon |
| TCONS_00001065-exon-sc0000007-1510915933:1260554..1261405 | TCONS_00001065-exon-sc0000007-1510915933:1260554..1261405 | Clytia hemisphaerica | exon |
| TCONS_00001065-exon-sc0000007-1575043694:1260554..1261405 | TCONS_00001065-exon-sc0000007-1575043694:1260554..1261405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:1257709..1261405 + |
Blast
BLAST of TCONS_00001065 vs. Swiss-Prot (Human)
Match: B2CL1 (Bcl-2-like protein 1 OS=Homo sapiens GN=BCL2L1 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.924e-19 Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query: 721 LRRVGDEFELAADTQFVANMCTRLSITPNTAYPMFQAISDKIFASGKNWGRVVAFLTFGSSLAVHCAEKPDMGVTFVDTIVSWIHQYVVSRLGEWIKEQGGLKGFMDFFKRDQA 1062
LR GDEFEL F +++ ++L ITP TAY F+ + +++F G NWGR+VAF +FG +L V +K +M V V I +W+ Y+ L WI+E GG F++ + + A
Sbjct: 90 LREAGDEFELRYRRAF-SDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDK-EMQV-LVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAA 200
The following BLAST results are available for this feature:
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