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TCONS_00001065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001065
Unique NameTCONS_00001065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1878

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001065 ID=TCONS_00001065|Name=TCONS_00001065|organism=Clytia hemisphaerica|type=transcript|length=1878bp
AGAACAAACCAAACCAGTCCAGTGGCAGAGAGGGGGAGGACACTAATTTT
GTTTTCACCACTCCATACCAACTAAATCAGGAAGAATTTCAGGTGGAATC
TGGTTATGAATCTACTAAACATGTTTGGCAGGAAGCTATATATTCAATTG
AATTGGGGGTGTGAGTTATAtacttttttgaattatttataTCTTTTTAC
AGATGAATTTATGAATAGTGAAGAGAGCCTTCCAAGCACACGACTCTTGA
AAAAGAAACGTTGCTTTGCTGGATGTATATTGCACAACACCAACATCAAT
ATATAGGACCATCAATGTTTTTATATTGGCTTGCTTGGATTAAATATCAT
TTTAAACACTCTTTATCTGGTTTTGGCTCTAAATTGTCTGTTGTTATGAT
TGTAAACTTGATTGTGTTTGGGACTGTTTGTGAAGAAAATTCATCTCTGT
AGTGGAGCTACGTTATATTTATTTAAAGTGAAAGCTTCAAGCTTAACAAT
TTAACCCAAGTTGCTTCTAGCTGTGAAGCTGGATTTATTAATAATTTATA
AGAGCATGGCTGGTGCTCAACCACCAAACGAAAATGAAGAGGAGAAAATT
CGTAGACTAATCCAAGATTTTGTTGGTGAAAGACTTCGGAGGAAAGGTAT
TTCTGTACCTGGCTATGATCAAGAAGAACTTATCAACGAAAATAGTAGCA
TTTCCGAAATTGCATTAACTTTACGAAGAGTTGGTGATGAATTTGAACTG
GCAGCAGATACACAATTTGTTGCAAACATGTGTACAAGACTTTCGATTAC
TCCAAATACTGCTTATCCTATGTTCCAAGCAATATCTGATAAAATTTTTG
CCTCAGGGAAAAACTGGGGGCGAGTTGTAGCTTTTCTGACATTTGGTAGT
TCTTTGGCAGTTCATTGTGCTGAGAAACCTGACATGGGTGTTACGTTTGT
CGATACAATAGTCAGTTGGATCCATCAGTACGTTGTCTCACGCTTGGGGG
AATGGATCAAAGAACAAGGTGGATTGaaagGATTCATGGACTTTTTCAAA
CGCGACCAAGCTCAAAATACGACTCAAAATGGATTCTTAATGTCCGCCCT
AGCGGGTGTAGGATTGGGCGCTTTCCTAATGATGACCTTCAAATAGATCA
AATTGCATGAAATTCAACATCTGTCGGGAGCGGCGACGAAAACGAATCGA
AAAGAATCGGTCAGCGCGACCGAATGATACCGAAAAGTCGAGTtccaaaa
aaaacgaaaataaaagtGGAATTTTGGAACTGTCTCCCGTATCACGAGGC
GCGAGAGTTCTTCTGAATTGACGACGTTGTGTTAGTTTAATTGGAAATTG
GTTATGAcgttttttgaatgtttgatAGACACTGTGGACATCGGGATAAT
GAATGATTTACCAATATGTTGAAAGTAGTATACATAGATAGGAAGTGATT
TCTTACGAGATTTCAGaaagttttcaaattcatcCAGCACTCATGCTGCT
TTTCGTTTTGATTGCGAAACAGTGCGAATCTTATGACTGGTAAACGATTG
ATTTAGCTCTATATTTTTGACGTAActatttgtaaaaaaatcttatatac
ccccacatttttgtttatttttattgctTATATCGATACTCCTATTGCAT
ATTGACTTGCTTGGATCCTGATAATCTTCAAAGCACTACAAGTAATGCTA
GTTCAGTTTAAACTGGGAAACCTGGGAAAACATGAAAGTATCTTAGTTCG
CAAAAGGCTAGGGTCTTGAAGATGATAGGGTGCTAGCAAGTTTAGTGAAA
ATAGGTCTTTAAAACACCAACtcctctcgggtacctaataagcgtccccc
CGCCAAAtaatttctcgaaaattttcca
Run BLAST on NCBI

transcript from alignment at sc0000007:1257709..1261405+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001065 ID=TCONS_00001065|Name=TCONS_00001065|organism=Clytia hemisphaerica|type=transcript|length=3697bp|location=Sequence derived from alignment at sc0000007:1257709..1261405+ (Clytia hemisphaerica)
AGAACAAACCAAACCAGTCCAGTGGCAGAGAGGGGGAGGACACTAATTTT GTTTTCACCACTCCATACCAACTAAATCAGGAAGAATTTCAGGTGGAATC TGGTTATGAATCTACTAAACATGTTTGGCAGGAAGCTATATATTCAATTG AATTGGGGGTGTGAGTTATAtacttttttgaattatttataTCTTTTTAC AGATGAATTTATGAATAGTGAAGAGAGCCTTCCAAGCACACGACTCTTGA AAAAGAAACGTTGCTTTGCTGGATGTATATTGCACAACACCAACATCAAT ATATAGGACCATCAATGTTTTTATATTGGCTTGCTTGGATTAAATATCAT TTTAAACACTCTTTATCTGGTTTTGGCTCTAAATTGTCTGTTGTTATGAT TGTAAACTTGATTGTGTTTGGGACTGTTTGTGAAGAAAATTCATCTCTGT AGTGGAGCTACGTTATATTTATTTAAAGTGAAAGCTTCAAGCTTAACAAT TTAACCCAAGTTGCTTCTAGCTGTGAAGCTGGATTTATTAATAATTTATA AGAGCATGGCTGGTGCTCAACCACCAAACGAAAATGAAGAGGAGAAAATT CGTAGACTAATCCAAGATTTTGTTGGTGAAAGACTTCGGAGGAAAGGTAT TTCTGTACCTGGCTATGATCAAGAAGAACTTATCAACGAAAATAGTAGCA TTTCCGAAATTGCATTAACTTTACGAAGAGTTGGTGATGAATTTGAACTG GCAGCAGATACACAATTTGTTGCAAACATGTGTACAAGACTTTCGATTAC TCCAAATACTGCTTATCCTATGTTCCAAGCAATATCTGATAAAATTTTTG CCTCAGGGAAAAACTGGGGGCGAGTTGTAGCTTTTCTGACATTTGGTAGT TCTTTGGCAGTTCATTGTGCTGAGAAACCTGACATGGGTGTTACGTTTGT CGATACAATAGTCAGTTGGATCCATCAGTACGTTGTCTCACGCTTGGGGG AATGGATCAAAGAACAAGGTGGATTGGTAAGCTTTTTctataaactcaaa aatctttaccgtgagatcgggtaacttgcatcagtggaggctaacatgca taaccctcaaatgaatgacctggctggtcattaaaatacaaagttacaac atcaaaacaaaaatggtagagtagagctgtgagcggaaCCGCgaagttcc tttgtttttaaattttgctgctttgattggtcagtcatttgatggctatg caagttaccctccactgatgcaagttacacGACTTCATGGTATATATCAG GGTATAATGGGTCTAATGGTTTGTTGTCCATTCATTTTAAATAAGTGTAA GCTGTACCATCATCATTGAGGTTAATTTCATAAGTTTGGAGTAACTTTCT AAATGTCTAAATCTTGGCCGCTAACAAGCACGTACtacttttatttgaaa taaggCCTTCTCAATGATTTTTACCATAAAAGTAGATTCTTTACTTACGT TAGTTTGTCTAATGTCAAAATCCCTCCTAATTCTGACAACCTTCTTTAGA TATATGAATAAAAGGAAGGTCAGAATTgttgattgaaaaaatttttttcc tttctgACCAGTATGGTAAGCAAAGAaatagtttcaatcagcgaCTCTGA CTTTTCTATTATTCCCATCTCTAAAAAGGATTTtagaattagatgaggga tcaGGAAGGACGTGGACAATAGACCAACTACAGTAGACAAACTTTTGATC CTGACAGACAAAAATTGACCCTGAGAAGTGGAAAAGATGACTAAAAGTGG ACctgttttttgagatttaatgATTTTGTCATAATACTTTCAGGGCTTAA ATAAGTGAGCATGTCAATACCCTTTCCCAAGTGACTCCCTCCCTCAGATA TCATTTATGATAGTGCTTTAAAAAAGTATTGGGTGTGGTCAAAAGCTTTT TGtgcaagaaataaaaatacCAGATTTCACGAGTTAAAAAGTGATAATGA CTGAAAAGAGTGTGAGTGTGAAGAAACATTTATcatgattttttaaagaa caatcCCTCAATTATTATAGTTCAGTTAGACTGAGGTTTTTGAAGATTAT TTCTATACATAGATGAGAACATTCTTTTAGCAACACACATTTTGAATATA ATTGGCTATGAATATTTTCTTAGCATGGGAGATGAATAATCGATGCTTTG CTATTTAAACTGATAATTGATTTCCTATTGAGCTTTTCAAAACTCTTTCA AAGATGACTTGAAAGTCTAAAGTACCTTTTGAAAATTGATGTCTCCTTCA TTTGAGACATACAAAGTCACATGAGATAGTGAACCAACTTTATTCTTTCC TTGGGTGGTAttcattttaaagtttgtatTGTATGTATAAgacaaaatat caaataatGAAATCAACTCATATGACTTGACTACAACTAGGTCAGAGGAA AccccattgtaagggagtgacATTGATAGGAATGCAATGATGAGCTTAAT AATTTCTTTTATCACAGACTCTCCCCCATAGAtgatttcttgttttttta tagGACAAAATAAGTATCGtcattatgaaaatatttttatgtaatcCTTT ATACTGTTTTCGTTGGCCTgctaaaaatcattaaaaaaagacTGTCGCTT GtcaaaaacatatttgaaaTTCTTGATATATACAATTTCCtatcaaatgt tttttataattatagACTTGCCCAGTTGAAAAAGCGCTGAAGTAAGGTTC CCATGAATTGACCCTCCATTGCACAATTATCGTTaatcaaaaacaagttt tcaTTTCCTGTAAAATCTaatgtttattttatttctcctttttagaaagG ATTCATGGACTTTTTCAAACGCGACCAAGCTCAAAATACGACTCAAAATG GATTCTTAATGTCCGCCCTAGCGGGTGTAGGATTGGGCGCTTTCCTAATG ATGACCTTCAAATAGATCAAATTGCATGAAATTCAACATCTGTCGGGAGC GGCGACGAAAACGAATCGAAAAGAATCGGTCAGCGCGACCGAATGATACC GAAAAGTCGAGTtccaaaaaaaacgaaaataaaagtGGAATTTTGGAACT GTCTCCCGTATCACGAGGCGCGAGAGTTCTTCTGAATTGACGACGTTGTG TTAGTTTAATTGGAAATTGGTTATGAcgttttttgaatgtttgatAGACA CTGTGGACATCGGGATAATGAATGATTTACCAATATGTTGAAAGTAGTAT ACATAGATAGGAAGTGATTTCTTACGAGATTTCAGaaagttttcaaattc atcCAGCACTCATGCTGCTTTTCGTTTTGATTGCGAAACAGTGCGAATCT TATGACTGGTAAACGATTGATTTAGCTCTATATTTTTGACGTAActattt gtaaaaaaatcttatatacccccacatttttgtttatttttattgctTAT ATCGATACTCCTATTGCATATTGACTTGCTTGGATCCTGATAATCTTCAA AGCACTACAAGTAATGCTAGTTCAGTTTAAACTGGGAAACCTGGGAAAAC ATGAAAGTATCTTAGTTCGCAAAAGGCTAGGGTCTTGAAGATGATAGGGT GCTAGCAAGTTTAGTGAAAATAGGTCTTTAAAACACCAACtcctctcggg tacctaataagcgtcccccCGCCAAAtaatttctcgaaaattttcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000603XLOC_000603Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001065-exon-sc0000007-1491911889:1257709..1258734TCONS_00001065-exon-sc0000007-1491911889:1257709..1258734Clytia hemisphaericaexon
TCONS_00001065-exon-sc0000007-1510915933:1257709..1258734TCONS_00001065-exon-sc0000007-1510915933:1257709..1258734Clytia hemisphaericaexon
TCONS_00001065-exon-sc0000007-1575043694:1257709..1258734TCONS_00001065-exon-sc0000007-1575043694:1257709..1258734Clytia hemisphaericaexon
TCONS_00001065-exon-sc0000007-1491911889:1260554..1261405TCONS_00001065-exon-sc0000007-1491911889:1260554..1261405Clytia hemisphaericaexon
TCONS_00001065-exon-sc0000007-1510915933:1260554..1261405TCONS_00001065-exon-sc0000007-1510915933:1260554..1261405Clytia hemisphaericaexon
TCONS_00001065-exon-sc0000007-1575043694:1260554..1261405TCONS_00001065-exon-sc0000007-1575043694:1260554..1261405Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1257709..1261405 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.6755 21.1019 4.4711 6.80039 44.0969 25.2804 20.6079 22.3798 8.25498 10.0297 5.97873 7.09743 5.83033 5.46713 4.33224 5.39976 10.8357 7.58615 6.9723 5.93702 15.3696 12.313 25.5552 24.3234 16.0624 19.2503 30.6876 35.5163 19.1024 27.1759
Blast
BLAST of TCONS_00001065 vs. Swiss-Prot (Human)
Match: B2CL1 (Bcl-2-like protein 1 OS=Homo sapiens GN=BCL2L1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.924e-19
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  721 LRRVGDEFELAADTQFVANMCTRLSITPNTAYPMFQAISDKIFASGKNWGRVVAFLTFGSSLAVHCAEKPDMGVTFVDTIVSWIHQYVVSRLGEWIKEQGGLKGFMDFFKRDQA 1062
            LR  GDEFEL     F +++ ++L ITP TAY  F+ + +++F  G NWGR+VAF +FG +L V   +K +M V  V  I +W+  Y+   L  WI+E GG   F++ +  + A
Sbjct:   90 LREAGDEFELRYRRAF-SDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDK-EMQV-LVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAA 200          
The following BLAST results are available for this feature:
BLAST of TCONS_00001065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B2CL12.924e-1939.47Bcl-2-like protein 1 OS=Homo sapiens GN=BCL2L1 PE=... [more]
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