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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001064 ID=TCONS_00001064|Name=TCONS_00001064|organism=Clytia hemisphaerica|type=transcript|length=1712bp
taGCTTTCAATAAGAGCAAAGAGACAAGGTCGCAAGATGAATTTATGAAT
AGTGAAGAGAGCCTTCCAAGCACACGACTCTTGAAAAAGAAACGTTGCTT
TGCTGGATGTATATTGCACAACACCAACATCAATATATAGGACCATCAAT
GTTTTTATATTGGCTTGCTTGGATTAAATATCATTTTAAACACTCTTTAT
CTGGTTTTGGCTCTAAATTGTCTGTTGTTATGATTGTAAACTTGATTGTG
TTTGGGACTGTTTGTGAAGAAAATTCATCTCTGTAGTGGAGCTACGTTAT
ATTTATTTAAAGTGAAAGCTTCAAGCTTAACAATTTAACCCAAGTTGCTT
CTAGCTGTGAAGCTGGATTTATTAATAATTTATAAGAGCATGGCTGGTGC
TCAACCACCAAACGAAAATGAAGAGGAGAAAATTCGTAGACTAATCCAAG
ATTTTGTTGGTGAAAGACTTCGGAGGAAAGGTATTTCTGTACCTGGCTAT
GATCAAGAAGAACTTATCAACGAAAATAGTAGCATTTCCGAAATTGCATT
AACTTTACGAAGAGTTGGTGATGAATTTGAACTGGCAGCAGATACACAAT
TTGTTGCAAACATGTGTACAAGACTTTCGATTACTCCAAATACTGCTTAT
CCTATGTTCCAAGCAATATCTGATAAAATTTTTGCCTCAGGGAAAAACTG
GGGGCGAGTTGTAGCTTTTCTGACATTTGGTAGTTCTTTGGCAGTTCATT
GTGCTGAGAAACCTGACATGGGTGTTACGTTTGTCGATACAATAGTCAGT
TGGATCCATCAGTACGTTGTCTCACGCTTGGGGGAATGGATCAAAGAACA
AGGTGGATTGaaagGATTCATGGACTTTTTCAAACGCGACCAAGCTCAAA
ATACGACTCAAAATGGATTCTTAATGTCCGCCCTAGCGGGTGTAGGATTG
GGCGCTTTCCTAATGATGACCTTCAAATAGATCAAATTGCATGAAATTCA
ACATCTGTCGGGAGCGGCGACGAAAACGAATCGAAAAGAATCGGTCAGCG
CGACCGAATGATACCGAAAAGTCGAGTtccaaaaaaaacgaaaataaaag
tGGAATTTTGGAACTGTCTCCCGTATCACGAGGCGCGAGAGTTCTTCTGA
ATTGACGACGTTGTGTTAGTTTAATTGGAAATTGGTTATGAcgttttttg
aatgtttgatAGACACTGTGGACATCGGGATAATGAATGATTTACCAATA
TGTTGAAAGTAGTATACATAGATAGGAAGTGATTTCTTACGAGATTTCAG
aaagttttcaaattcatcCAGCACTCATGCTGCTTTTCGTTTTGATTGCG
AAACAGTGCGAATCTTATGACTGGTAAACGATTGATTTAGCTCTATATTT
TTGACGTAActatttgtaaaaaaatcttatatacccccacatttttgttt
atttttattgctTATATCGATACTCCTATTGCATATTGACTTGCTTGGAT
CCTGATAATCTTCAAAGCACTACAAGTAATGCTAGTTCAGTTTAAACTGG
GAAACCTGGGAAAACATGAAAGTATCTTAGTTCGCAAAAGGCTAGGGTCT
TGAAGATGATAGGGTGCTAGCAAGTTTAGTGAAAATAGGTCTTTAAAACA
CCAACtcctctcgggtacctaataagcgtcccccCGCCAAAtaatttctc
gaaaattttcca Run BLAST on NCBI protein sequence of TCONS_00001064-protein >TCONS_00001064-protein ID=TCONS_00001064-protein|Name=TCONS_00001064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MAGAQPPNENEEEKIRRLIQDFVGERLRRKGISVPGYDQEELINENSSIS
EIALTLRRVGDEFELAADTQFVANMCTRLSITPNTAYPMFQAISDKIFAS
GKNWGRVVAFLTFGSSLAVHCAEKPDMGVTFVDTIVSWIHQYVVSRLGEW
IKEQGGLKGFMDFFKRDQAQNTTQNGFLMSALAGVGLGAFLMMTFK Run BLAST on NCBI transcript from alignment at sc0000007:1257073..1261405+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001064 ID=TCONS_00001064|Name=TCONS_00001064|organism=Clytia hemisphaerica|type=transcript|length=4333bp|location=Sequence derived from alignment at sc0000007:1257073..1261405+ (Clytia hemisphaerica)
taGCTTTCAATAAGAGCAAAGAGACAAGGTCGCAAGGTACATActacatt
ttaaaacttttacaaattgACTTGGTGGTGATTAACGATCGGTAATCAGC
ACATTTGACATTTTAAAGGTTACTATAATTCAAAGGATGGCGGACGATTT
GAACACTATTTTATATATTGTATGTATACTGTACATTTTGTCAACTcaag
gtttcttttgttgtcttTTCTACAAAGAGACCACCCATGATCCATATATT
CGTTTAGACATCTACCGTTGTATTTTTTCTCGATAACGATATACCATACC
AATAACCCTGTCCTGTTATCTCTCCCTAAAAAGACCCTATTTTTTTGTGA
GGGCCGGGCGGGATAATGGGGTGGAACCCGGGCAAAAAGTTGTGCGGGAA
TGTGCCGCTGTGACTAggttagggtaccttttttcatctccatgagtccc
aggtaggctcacaaaaacactaaaatagaaaaatcagttcctTGGTAGAA
TCTCGGAAGTAGAAATtcggcaaaattttcaaaaatcgagcACATGCAAT
TTGACGGGgcggttttgttttcaaaagacCGCCCCCGCCAGCAGCGATCG
CGTGCATGGATCTTTCTTTTTCGTGCGCGTCAAAGCAGAACAAACCAAAC
CAGTCCAGTGGCAGAGAGGGGGAGGACACTAATTTTGTTTTCACCACTCC
ATACCAACTAAATCAGGAAGAATTTCAGGTGGAATCTGGTTATGAATCTA
CTAAACATGTTTGGCAGGAAGCTATATATTCAATTGAATTGGGGGTGTGA
GTTATAtacttttttgaattatttataTCTTTTTACAGATGAATTTATGA
ATAGTGAAGAGAGCCTTCCAAGCACACGACTCTTGAAAAAGAAACGTTGC
TTTGCTGGATGTATATTGCACAACACCAACATCAATATATAGGACCATCA
ATGTTTTTATATTGGCTTGCTTGGATTAAATATCATTTTAAACACTCTTT
ATCTGGTTTTGGCTCTAAATTGTCTGTTGTTATGATTGTAAACTTGATTG
TGTTTGGGACTGTTTGTGAAGAAAATTCATCTCTGTAGTGGAGCTACGTT
ATATTTATTTAAAGTGAAAGCTTCAAGCTTAACAATTTAACCCAAGTTGC
TTCTAGCTGTGAAGCTGGATTTATTAATAATTTATAAGAGCATGGCTGGT
GCTCAACCACCAAACGAAAATGAAGAGGAGAAAATTCGTAGACTAATCCA
AGATTTTGTTGGTGAAAGACTTCGGAGGAAAGGTATTTCTGTACCTGGCT
ATGATCAAGAAGAACTTATCAACGAAAATAGTAGCATTTCCGAAATTGCA
TTAACTTTACGAAGAGTTGGTGATGAATTTGAACTGGCAGCAGATACACA
ATTTGTTGCAAACATGTGTACAAGACTTTCGATTACTCCAAATACTGCTT
ATCCTATGTTCCAAGCAATATCTGATAAAATTTTTGCCTCAGGGAAAAAC
TGGGGGCGAGTTGTAGCTTTTCTGACATTTGGTAGTTCTTTGGCAGTTCA
TTGTGCTGAGAAACCTGACATGGGTGTTACGTTTGTCGATACAATAGTCA
GTTGGATCCATCAGTACGTTGTCTCACGCTTGGGGGAATGGATCAAAGAA
CAAGGTGGATTGGTAAGCTTTTTctataaactcaaaaatctttaccgtga
gatcgggtaacttgcatcagtggaggctaacatgcataaccctcaaatga
atgacctggctggtcattaaaatacaaagttacaacatcaaaacaaaaat
ggtagagtagagctgtgagcggaaCCGCgaagttcctttgtttttaaatt
ttgctgctttgattggtcagtcatttgatggctatgcaagttaccctcca
ctgatgcaagttacacGACTTCATGGTATATATCAGGGTATAATGGGTCT
AATGGTTTGTTGTCCATTCATTTTAAATAAGTGTAAGCTGTACCATCATC
ATTGAGGTTAATTTCATAAGTTTGGAGTAACTTTCTAAATGTCTAAATCT
TGGCCGCTAACAAGCACGTACtacttttatttgaaataaggCCTTCTCAA
TGATTTTTACCATAAAAGTAGATTCTTTACTTACGTTAGTTTGTCTAATG
TCAAAATCCCTCCTAATTCTGACAACCTTCTTTAGATATATGAATAAAAG
GAAGGTCAGAATTgttgattgaaaaaatttttttcctttctgACCAGTAT
GGTAAGCAAAGAaatagtttcaatcagcgaCTCTGACTTTTCTATTATTC
CCATCTCTAAAAAGGATTTtagaattagatgagggatcaGGAAGGACGTG
GACAATAGACCAACTACAGTAGACAAACTTTTGATCCTGACAGACAAAAA
TTGACCCTGAGAAGTGGAAAAGATGACTAAAAGTGGACctgttttttgag
atttaatgATTTTGTCATAATACTTTCAGGGCTTAAATAAGTGAGCATGT
CAATACCCTTTCCCAAGTGACTCCCTCCCTCAGATATCATTTATGATAGT
GCTTTAAAAAAGTATTGGGTGTGGTCAAAAGCTTTTTGtgcaagaaataa
aaatacCAGATTTCACGAGTTAAAAAGTGATAATGACTGAAAAGAGTGTG
AGTGTGAAGAAACATTTATcatgattttttaaagaacaatcCCTCAATTA
TTATAGTTCAGTTAGACTGAGGTTTTTGAAGATTATTTCTATACATAGAT
GAGAACATTCTTTTAGCAACACACATTTTGAATATAATTGGCTATGAATA
TTTTCTTAGCATGGGAGATGAATAATCGATGCTTTGCTATTTAAACTGAT
AATTGATTTCCTATTGAGCTTTTCAAAACTCTTTCAAAGATGACTTGAAA
GTCTAAAGTACCTTTTGAAAATTGATGTCTCCTTCATTTGAGACATACAA
AGTCACATGAGATAGTGAACCAACTTTATTCTTTCCTTGGGTGGTAttca
ttttaaagtttgtatTGTATGTATAAgacaaaatatcaaataatGAAATC
AACTCATATGACTTGACTACAACTAGGTCAGAGGAAAccccattgtaagg
gagtgacATTGATAGGAATGCAATGATGAGCTTAATAATTTCTTTTATCA
CAGACTCTCCCCCATAGAtgatttcttgtttttttatagGACAAAATAAG
TATCGtcattatgaaaatatttttatgtaatcCTTTATACTGTTTTCGTT
GGCCTgctaaaaatcattaaaaaaagacTGTCGCTTGtcaaaaacatatt
tgaaaTTCTTGATATATACAATTTCCtatcaaatgttttttataattata
gACTTGCCCAGTTGAAAAAGCGCTGAAGTAAGGTTCCCATGAATTGACCC
TCCATTGCACAATTATCGTTaatcaaaaacaagttttcaTTTCCTGTAAA
ATCTaatgtttattttatttctcctttttagaaagGATTCATGGACTTTT
TCAAACGCGACCAAGCTCAAAATACGACTCAAAATGGATTCTTAATGTCC
GCCCTAGCGGGTGTAGGATTGGGCGCTTTCCTAATGATGACCTTCAAATA
GATCAAATTGCATGAAATTCAACATCTGTCGGGAGCGGCGACGAAAACGA
ATCGAAAAGAATCGGTCAGCGCGACCGAATGATACCGAAAAGTCGAGTtc
caaaaaaaacgaaaataaaagtGGAATTTTGGAACTGTCTCCCGTATCAC
GAGGCGCGAGAGTTCTTCTGAATTGACGACGTTGTGTTAGTTTAATTGGA
AATTGGTTATGAcgttttttgaatgtttgatAGACACTGTGGACATCGGG
ATAATGAATGATTTACCAATATGTTGAAAGTAGTATACATAGATAGGAAG
TGATTTCTTACGAGATTTCAGaaagttttcaaattcatcCAGCACTCATG
CTGCTTTTCGTTTTGATTGCGAAACAGTGCGAATCTTATGACTGGTAAAC
GATTGATTTAGCTCTATATTTTTGACGTAActatttgtaaaaaaatctta
tatacccccacatttttgtttatttttattgctTATATCGATACTCCTAT
TGCATATTGACTTGCTTGGATCCTGATAATCTTCAAAGCACTACAAGTAA
TGCTAGTTCAGTTTAAACTGGGAAACCTGGGAAAACATGAAAGTATCTTA
GTTCGCAAAAGGCTAGGGTCTTGAAGATGATAGGGTGCTAGCAAGTTTAG
TGAAAATAGGTCTTTAAAACACCAACtcctctcgggtacctaataagcgt
cccccCGCCAAAtaatttctcgaaaattttcca Coding sequence (CDS) from alignment at sc0000007:1257073..1261405+ >TCONS_00001064 ID=TCONS_00001064|Name=TCONS_00001064|organism=Clytia hemisphaerica|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0000007:1257073..1261405+ (Clytia hemisphaerica)
ATGGCTGGTGCTCAACCACCAAACGAAAATGAAGAGGAGAAAATTCGTAG
ACTAATCCAAGATTTTGTTGGTGAAAGACTTCGGAGGAAAGGTATTTCTG
TACCTGGCTATGATCAAGAAGAACTTATCAACGAAAATAGTAGCATTTCC
GAAATTGCATTAACTTTACGAAGAGTTGGTGATGAATTTGAACTGGCAGC
AGATACACAATTTGTTGCAAACATGTGTACAAGACTTTCGATTACTCCAA
ATACTGCTTATCCTATGTTCCAAGCAATATCTGATAAAATTTTTGCCTCA
GGGAAAAACTGGGGGCGAGTTGTAGCTTTTCTGACATTTGGTAGTTCTTT
GGCAGTTCATTGTGCTGAGAAACCTGACATGGGTGTTACGTTTGTCGATA
CAATAGTCAGTTGGATCCATCAGTACGTTGTCTCACGCTTGGGGGAATGG
ATCAAAGAACAAGGTGGATTGaaagGATTCATGGACTTTTTCAAACGCGA
CCAAGCTCAAAATACGACTCAAAATGGATTCTTAATGTCCGCCCTAGCGG
GTGTAGGATTGGGCGCTTTCCTAATGATGACCTTCAAATAGATGGCTGGT
GCTCAACCACCAAACGAAAATGAAGAGGAGAAAATTCGTAGACTAATCCA
AGATTTTGTTGGTGAAAGACTTCGGAGGAAAGGTATTTCTGTACCTGGCT
ATGATCAAGAAGAACTTATCAACGAAAATAGTAGCATTTCCGAAATTGCA
TTAACTTTACGAAGAGTTGGTGATGAATTTGAACTGGCAGCAGATACACA
ATTTGTTGCAAACATGTGTACAAGACTTTCGATTACTCCAAATACTGCTT
ATCCTATGTTCCAAGCAATATCTGATAAAATTTTTGCCTCAGGGAAAAAC
TGGGGGCGAGTTGTAGCTTTTCTGACATTTGGTAGTTCTTTGGCAGTTCA
TTGTGCTGAGAAACCTGACATGGGTGTTACGTTTGTCGATACAATAGTCA
GTTGGATCCATCAGTACGTTGTCTCACGCTTGGGGGAATGGATCAAAGAA
CAAGGTGGATTGaaagGATTCATGGACTTTTTCAAACGCGACCAAGCTCA
AAATACGACTCAAAATGGATTCTTAATGTCCGCCCTAGCGGGTGTAGGAT
TGGGCGCTTTCCTAATGATGACCTTCAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001064-exon-sc0000007-1491911889:1257073..1257108 | TCONS_00001064-exon-sc0000007-1491911889:1257073..1257108 | Clytia hemisphaerica | exon |
| TCONS_00001064-exon-sc0000007-1510915933:1257073..1257108 | TCONS_00001064-exon-sc0000007-1510915933:1257073..1257108 | Clytia hemisphaerica | exon |
| TCONS_00001064-exon-sc0000007-1575043694:1257073..1257108 | TCONS_00001064-exon-sc0000007-1575043694:1257073..1257108 | Clytia hemisphaerica | exon |
| TCONS_00001064-exon-sc0000007-1491911889:1257911..1258734 | TCONS_00001064-exon-sc0000007-1491911889:1257911..1258734 | Clytia hemisphaerica | exon |
| TCONS_00001064-exon-sc0000007-1510915933:1257911..1258734 | TCONS_00001064-exon-sc0000007-1510915933:1257911..1258734 | Clytia hemisphaerica | exon |
| TCONS_00001064-exon-sc0000007-1575043694:1257911..1258734 | TCONS_00001064-exon-sc0000007-1575043694:1257911..1258734 | Clytia hemisphaerica | exon |
| TCONS_00001064-exon-sc0000007-1491911889:1260554..1261405 | TCONS_00001064-exon-sc0000007-1491911889:1260554..1261405 | Clytia hemisphaerica | exon |
| TCONS_00001064-exon-sc0000007-1510915933:1260554..1261405 | TCONS_00001064-exon-sc0000007-1510915933:1260554..1261405 | Clytia hemisphaerica | exon |
| TCONS_00001064-exon-sc0000007-1575043694:1260554..1261405 | TCONS_00001064-exon-sc0000007-1575043694:1260554..1261405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:1257073..1261405 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0042981 | regulation of apoptotic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0042981 |
regulation of apoptotic process |
Blast
BLAST of TCONS_00001064 vs. Swiss-Prot (Human)
Match: B2CL1 (Bcl-2-like protein 1 OS=Homo sapiens GN=BCL2L1 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 2.311e-19 Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 3
Query: 555 LRRVGDEFELAADTQFVANMCTRLSITPNTAYPMFQAISDKIFASGKNWGRVVAFLTFGSSLAVHCAEKPDMGVTFVDTIVSWIHQYVVSRLGEWIKEQGGLKGFMDFFKRDQA 896
LR GDEFEL F +++ ++L ITP TAY F+ + +++F G NWGR+VAF +FG +L V +K +M V V I +W+ Y+ L WI+E GG F++ + + A
Sbjct: 90 LREAGDEFELRYRRAF-SDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDK-EMQV-LVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNAA 200
The following BLAST results are available for this feature:
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