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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001062 ID=TCONS_00001062|Name=TCONS_00001062|organism=Clytia hemisphaerica|type=transcript|length=1852bp
CTTGCCCTGGCCGGTGAGGTACTACAGAAATGACTGGTGAGAATTTCAAT
GATTTCCTACGAAAAACGACATACTGAGaacgatttgaaaataattttgt
tctACTTTTGAGTGGTTCGTATTCCCCCTTTTGTATAGGGGAGTGAGTGT
TGcatctttccaaatttttgatattccaccctgtttcagtgacctGCTTT
CAATAATCATGTCTAATACCTTTactttctttgatgttttttagattcaa
ttttaaaaaaaaacaatactttAGAATGTAGGGGAAATGGTATATCTAAT
AATCTTTGTAATCCTGGTGGCAGTTTATCCTTTTGAAACTGTTGGTCAGA
AACAAGCATGGTCTAATGTTGTGGCAAGCACATGTAAATTCACTGTGAAT
CATGACCTTGATATTCGATTCGAACAAAACCCCTTGCTGTTCATTGATCG
ATTGACTGAACCTGATGTCAACAGTTGTCGAAAGCAATGTTGTGACCACA
AAACATGTAATAGCTATGTGTGGGATGCATATGATCGAGTGAATGGCAAC
TGCAAATTATTGAAGTGTTCAGATGAAGGGACAGATTGTAGGAATGCATT
AACACGAAGAACAAGTGTTGGTGAAGATATAAGTCAACACGAAGTGGGCT
TCATCACTGGCGTCACTGATAACACAACGCCCAATCCTTTGGACGCTGTG
TTAGGCCCTCAACCCACTCCAAAAACGACGACCTTGAAAACGAATCCTCC
ACACATGTATCCTTCATCTCAAGTAAAGCAGGACAATCTTGTTACAGATA
CACCTTTTTCAAGAAAGCCTCTCGCATCTACAACAACTACGACCAAATCT
GTCCCTTTGATAAAAGACATGGCTGAAAGGCCATCTACAACGACCACTAC
ATCAAGTACGACATTCATGAGATCAGCAATGAGCACTATCAAACCAGCAA
CATCAACTAAAACTTCCACAGTAGTGACACCTGTTCCAACAATAATGGAA
TTTTTACAAACGAACCAATCAACAACAGATTTACCATTGACCAcTCCAAA
GAAGACGCATATTCACACGAAAACACCAAAGAACGTAACCAAGTCATCTT
CAAAGGGGGTCATTGAGGCAGGAAGTGGAATTTCTCATTCTGATAACATC
TCTTTAACTGGTGCAGTTTTCTTTGGACTTGCTTTTTCCTTTGTGACCAT
TTATTTAGTTGGTAAACGGTGGATAGAAGGACTTCGAGAATCTAAAGGCA
GGCGTGGTTACACTCGTATTTCCTATCTTCTAAATGGAGTTTGAGTTTCG
ATATTCGTTTGAATATATTAGGTTTGATAAGTTAGGGTTCGTAGATTTCG
ATATTCGTTTTTGAGTATCTGTTTTTTGGATATTTATCGACGTTTGTAAA
TATAAGTTATTTTGGAGTAAAATGCAATAAGTTCTCATCAAATTACATCA
CAAATGTTTTCAAGGAACAAAATTTTGACACCCTGACTTCTTTATTCGTT
CTCAGTTAATACACTATTTTTGGAGACtctaaaaaaaactttcctGATTA
TTTGACTTAATTAGGTTTGCTTCTCCGTTCTAGATGTTATATTTTGATGA
TTGTTATCTATAATCATTcttaaaatatttaatttttggttgtacatgtt
tttttttaccttgCTTTATTTATTTCACTTGATGATTCACTTGAAAAAGG
GATAATTTCGTAATATTAGCGTCTTATATACATTATTcacatcatttttg
aaattatgcatTTTTAAGAATGATATTTTGTACAACttgataaaaaatat
gaaagagcttgaatttaaaagaagaatttttcctTCTCATATTCATCTAA
TT Run BLAST on NCBI protein sequence of TCONS_00001062-protein >TCONS_00001062-protein ID=TCONS_00001062-protein|Name=TCONS_00001062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
MVYLIIFVILVAVYPFETVGQKQAWSNVVASTCKFTVNHDLDIRFEQNPL
LFIDRLTEPDVNSCRKQCCDHKTCNSYVWDAYDRVNGNCKLLKCSDEGTD
CRNALTRRTSVGEDISQHEVGFITGVTDNTTPNPLDAVLGPQPTPKTTTL
KTNPPHMYPSSQVKQDNLVTDTPFSRKPLASTTTTTKSVPLIKDMAERPS
TTTTTSSTTFMRSAMSTIKPATSTKTSTVVTPVPTIMEFLQTNQSTTDLP
LTTPKKTHIHTKTPKNVTKSSSKGVIEAGSGISHSDNISLTGAVFFGLAF
SFVTIYLVGKRWIEGLRESKGRRGYTRISYLLNGV Run BLAST on NCBI transcript from alignment at sc0000007:1253534..1256195+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001062 ID=TCONS_00001062|Name=TCONS_00001062|organism=Clytia hemisphaerica|type=transcript|length=2662bp|location=Sequence derived from alignment at sc0000007:1253534..1256195+ (Clytia hemisphaerica)
CTTGCCCTGGCCGGTGAGGTACTACAGAAATGACTGGTGAGAATTTCAAT
GATTTCCTACGAAAAACGACATACTGAGaacgatttgaaaataattttgt
tctACTTTTGAGTGGTTCGTATTCCCCCTTTTGTATAGGGGAGTGAGTGT
TGcatctttccaaatttttgatattccaccctgtttcagtgacctGCTTT
CAATAATCATGTCTAATACCTTTactttctttgatgttttttagattcaa
ttttaaaaaaaaacaatactttAGAATGTAGGGGAAATGGTATATCTAAT
AATCTTTGTAATCCTGGTGGCAGTTTATCCTTTTGAAACTGTTGGTCAGA
AACAAGCATGGTCTAATGTTGTGGCAAGCACATGTAAATTCACTGTGAAT
CATGACCTTGATATTCGATTCGAACAAAACCCCTTGCTGTTCATTGATCG
ATTGACTGAACCTGATGTCAACAGTTGTCGAAAGCAATGTTGTGACCACA
AAACATGTAATAGCTATGTGTGGGATGCATATGATCGAGTGAATGGCAAC
TGCAAATTATTGAAGTGTTCAGATGAAGGGACAGATTGTAGGAATGCATT
AACACGAAGAACAAGTGTTGGTGAAGATATAAGTCAACACGAAGTGGGCT
TCATCACTGGCGTCACTGATAACACAACGCCCAGTAAGTCCACTGGTTTT
CTCAATAACACAACGCCCAGTAAGTCCACTGGTTTTCTCAGTATCTCATC
TCAATTAATATTCTTATGCCATATTCGATCATATTTTAACCATTCTTATT
TCTCGTTGCCTATTCACGCCTAAAAATTAGAGATTTCAATTCTCTTGAAA
CAAATCTTAAAAAGACCTATTCATATATCTTTTTTAATAGGCATAATTTT
TAATGTCTTTTTATTTCAGATCCTTTGGACGCTGTGTTAGGCCCTCAACC
CACTCCAAAAACGACGACCTTGAAAACGAATCCTCCACACATGTATCCTT
CATCTCAAGTAAAGCAGGACAATCTTGTTACAGATACACCTTTTTCAAGA
AAGCCTCTCGCATCTACAACAACTACGACCAAATCTGTCCCTTTGATAAA
AGACATGGCTGAAAGGCCATCTACAACGACCACTACATCAAGTACGACAT
TCATGAGATCAGCAATGAGCACTATCAAACCAGCAACATCAACTAAAACT
TCCACAGTAGTGACACCTGTTGTGagttttataatattttttctaatcCA
CGATACACATCTCGCATGATTACTCCTTTTTTCCTATCAGAACCATATAG
ACCAGCAAGCATGACCTGTATAGACCGCAAAACTGGAATTAATTTCTATT
AGaggtgaaatttatgacttttaTCTTTTGAAATCATCTGCAGATCGTCC
AAAAACTGAAAGCCTTAGAAATCGCCAAAATAGTTAAATATATAAGTTGA
TATATTCAAAGTCTTTTAATGTctattttgattaaattttaaAGTACACC
TTTTCTTCTACTTTCCAGCCAACAATAATGGAATTTTTACAAACGAACCA
ATCAACAACAGATTTACCATTGACCAGTATGTTTTCTTTCTCATGCTCTC
TTTTCTCCATTTACCTTTAAAACTTTCATGGGCTCCCTCTTGTTTGCGAA
TCAGTCAGGCTTGATTTATTGATGTTTTGGTTGGTTGAATATATTTGAAA
TAAGTTGATGTTTTCGTGATAAATTTTGTCTTCGTCAAGCATTAAAGTAA
ATTTCCAATGTCACGAGACTCGTCATTAGAGACTTCAAAGGCTAAGAATA
CGttcaaggttaaaaaaaacTCTAATATTCACAGccaatgttttttgttt
tagcTCCAAAGAAGACGCATATTCACACGAAAACACCAAAGAACGTAACC
AAGTCATCTTCAAAGGGGGTCATTGAGGCAGGAAGTGGAATTTCTCATTC
TGATAACATCTCTTTAACTGGTGCAGTTTTCTTTGGACTTGCTTTTTCCT
TTGTGACCATTTATTTAGTTGGTAAACGGTGGATAGAAGGACTTCGAGAA
TCTAAAGGCAGGCGTGGTTACACTCGTATTTCCTATCTTCTAAATGGAGT
TTGAGTTTCGATATTCGTTTGAATATATTAGGTTTGATAAGTTAGGGTTC
GTAGATTTCGATATTCGTTTTTGAGTATCTGTTTTTTGGATATTTATCGA
CGTTTGTAAATATAAGTTATTTTGGAGTAAAATGCAATAAGTTCTCATCA
AATTACATCACAAATGTTTTCAAGGAACAAAATTTTGACACCCTGACTTC
TTTATTCGTTCTCAGTTAATACACTATTTTTGGAGACtctaaaaaaaact
ttcctGATTATTTGACTTAATTAGGTTTGCTTCTCCGTTCTAGATGTTAT
ATTTTGATGATTGTTATCTATAATCATTcttaaaatatttaatttttggt
tgtacatgtttttttttaccttgCTTTATTTATTTCACTTGATGATTCAC
TTGAAAAAGGGATAATTTCGTAATATTAGCGTCTTATATACATTATTcac
atcatttttgaaattatgcatTTTTAAGAATGATATTTTGTACAACttga
taaaaaatatgaaagagcttgaatttaaaagaagaatttttcctTCTCAT
ATTCATCTAATT Coding sequence (CDS) from alignment at sc0000007:1253534..1256195+ >TCONS_00001062 ID=TCONS_00001062|Name=TCONS_00001062|organism=Clytia hemisphaerica|type=CDS|length=4032bp|location=Sequence derived from alignment at sc0000007:1253534..1256195+ (Clytia hemisphaerica)
ATGGTATATCTAATAATCTTTGTAATCCTGGTGGCAGTTTATCCTTTTGA
AACTGTTGGTCAGAAACAAGCATGGTCTAATGTTGTGGCAAGCACATGTA
AATTCACTGTGAATCATGACCTTGATATTCGATTCGAACAAAACCCCTTG
CTGTTCATTGATCGATTGACTGAACCTGATGTCAACAGTTGTCGAAAGCA
ATGTTGTGACCACAAAACATGTAATAGCTATGTGTGGGATGCATATGATC
GAGTGAATGGCAACTGCAAATTATTGAAGTGTTCAGATGAAGGGACAGAT
TGTAGGAATGCATTAACACGAAGAACAAGTGTTGGTGAAGATATAAGTCA
ACACGAAGTGGGCTTCATCACTGGCGTCACTGATAACACAACGCCCAATC
CTTTGGACGCTGTGTTAGGCCCTCAACCCACTCCAAAAACGACGACCTTG
AAAACGAATCCTCCACACATGTATCCTTCATCTCAAGTAAAGCAGGACAA
TCTTGTTACAGATACACCTTTTTCAAGAAAGCCTCTCGCATCTACAACAA
CTACGACCAAATCTGTCCCTTTGATAAAAGACATGGCTGAAAGGCCATCT
ACAACGACCACTACATCAAGTACGACATTCATGAGATCAGCAATGAGCAC
TATCAAACCAGCAACATCAACTAAAACTTCCACAGTAGTGACACCTGTTC
CAACAATAATGGAATTTTTACAAACGAACCAATCAACAACAGATTTACCA
TTGACCAcTCCAAAGAAGACGCATATTCACACGAAAACACCAAAGAACGT
AACCAAGTCATCTTCAAAGGGGGTCATTGAGGCAGGAAGTGGAATTTCTC
ATTCTGATAACATCTCTTTAACTGGTGCAGTTTTCTTTGGACTTGCTTTT
TCCTTTGTGACCATTTATTTAGTTGGTAAACGGTGGATAGAAGGACTTCG
AGAATCTAAAGGCAGGCGTGGTTACACTCGTATTTCCTATCTTCTAAATG
GAGTTTGAATGGTATATCTAATAATCTTTGTAATCCTGGTGGCAGTTTAT
CCTTTTGAAACTGTTGGTCAGAAACAAGCATGGTCTAATGTTGTGGCAAG
CACATGTAAATTCACTGTGAATCATGACCTTGATATTCGATTCGAACAAA
ACCCCTTGCTGTTCATTGATCGATTGACTGAACCTGATGTCAACAGTTGT
CGAAAGCAATGTTGTGACCACAAAACATGTAATAGCTATGTGTGGGATGC
ATATGATCGAGTGAATGGCAACTGCAAATTATTGAAGTGTTCAGATGAAG
GGACAGATTGTAGGAATGCATTAACACGAAGAACAAGTGTTGGTGAAGAT
ATAAGTCAACACGAAGTGGGCTTCATCACTGGCGTCACTGATAACACAAC
GCCCAATCCTTTGGACGCTGTGTTAGGCCCTCAACCCACTCCAAAAACGA
CGACCTTGAAAACGAATCCTCCACACATGTATCCTTCATCTCAAGTAAAG
CAGGACAATCTTGTTACAGATACACCTTTTTCAAGAAAGCCTCTCGCATC
TACAACAACTACGACCAAATCTGTCCCTTTGATAAAAGACATGGCTGAAA
GGCCATCTACAACGACCACTACATCAAGTACGACATTCATGAGATCAGCA
ATGAGCACTATCAAACCAGCAACATCAACTAAAACTTCCACAGTAGTGAC
ACCTGTTCCAACAATAATGGAATTTTTACAAACGAACCAATCAACAACAG
ATTTACCATTGACCAcTCCAAAGAAGACGCATATTCACACGAAAACACCA
AAGAACGTAACCAAGTCATCTTCAAAGGGGGTCATTGAGGCAGGAAGTGG
AATTTCTCATTCTGATAACATCTCTTTAACTGGTGCAGTTTTCTTTGGAC
TTGCTTTTTCCTTTGTGACCATTTATTTAGTTGGTAAACGGTGGATAGAA
GGACTTCGAGAATCTAAAGGCAGGCGTGGTTACACTCGTATTTCCTATCT
TCTAAATGGAGTTTGAATGGTATATCTAATAATCTTTGTAATCCTGGTGG
CAGTTTATCCTTTTGAAACTGTTGGTCAGAAACAAGCATGGTCTAATGTT
GTGGCAAGCACATGTAAATTCACTGTGAATCATGACCTTGATATTCGATT
CGAACAAAACCCCTTGCTGTTCATTGATCGATTGACTGAACCTGATGTCA
ACAGTTGTCGAAAGCAATGTTGTGACCACAAAACATGTAATAGCTATGTG
TGGGATGCATATGATCGAGTGAATGGCAACTGCAAATTATTGAAGTGTTC
AGATGAAGGGACAGATTGTAGGAATGCATTAACACGAAGAACAAGTGTTG
GTGAAGATATAAGTCAACACGAAGTGGGCTTCATCACTGGCGTCACTGAT
AACACAACGCCCAATCCTTTGGACGCTGTGTTAGGCCCTCAACCCACTCC
AAAAACGACGACCTTGAAAACGAATCCTCCACACATGTATCCTTCATCTC
AAGTAAAGCAGGACAATCTTGTTACAGATACACCTTTTTCAAGAAAGCCT
CTCGCATCTACAACAACTACGACCAAATCTGTCCCTTTGATAAAAGACAT
GGCTGAAAGGCCATCTACAACGACCACTACATCAAGTACGACATTCATGA
GATCAGCAATGAGCACTATCAAACCAGCAACATCAACTAAAACTTCCACA
GTAGTGACACCTGTTCCAACAATAATGGAATTTTTACAAACGAACCAATC
AACAACAGATTTACCATTGACCAcTCCAAAGAAGACGCATATTCACACGA
AAACACCAAAGAACGTAACCAAGTCATCTTCAAAGGGGGTCATTGAGGCA
GGAAGTGGAATTTCTCATTCTGATAACATCTCTTTAACTGGTGCAGTTTT
CTTTGGACTTGCTTTTTCCTTTGTGACCATTTATTTAGTTGGTAAACGGT
GGATAGAAGGACTTCGAGAATCTAAAGGCAGGCGTGGTTACACTCGTATT
TCCTATCTTCTAAATGGAGTTTGAATGGTATATCTAATAATCTTTGTAAT
CCTGGTGGCAGTTTATCCTTTTGAAACTGTTGGTCAGAAACAAGCATGGT
CTAATGTTGTGGCAAGCACATGTAAATTCACTGTGAATCATGACCTTGAT
ATTCGATTCGAACAAAACCCCTTGCTGTTCATTGATCGATTGACTGAACC
TGATGTCAACAGTTGTCGAAAGCAATGTTGTGACCACAAAACATGTAATA
GCTATGTGTGGGATGCATATGATCGAGTGAATGGCAACTGCAAATTATTG
AAGTGTTCAGATGAAGGGACAGATTGTAGGAATGCATTAACACGAAGAAC
AAGTGTTGGTGAAGATATAAGTCAACACGAAGTGGGCTTCATCACTGGCG
TCACTGATAACACAACGCCCAATCCTTTGGACGCTGTGTTAGGCCCTCAA
CCCACTCCAAAAACGACGACCTTGAAAACGAATCCTCCACACATGTATCC
TTCATCTCAAGTAAAGCAGGACAATCTTGTTACAGATACACCTTTTTCAA
GAAAGCCTCTCGCATCTACAACAACTACGACCAAATCTGTCCCTTTGATA
AAAGACATGGCTGAAAGGCCATCTACAACGACCACTACATCAAGTACGAC
ATTCATGAGATCAGCAATGAGCACTATCAAACCAGCAACATCAACTAAAA
CTTCCACAGTAGTGACACCTGTTCCAACAATAATGGAATTTTTACAAACG
AACCAATCAACAACAGATTTACCATTGACCAcTCCAAAGAAGACGCATAT
TCACACGAAAACACCAAAGAACGTAACCAAGTCATCTTCAAAGGGGGTCA
TTGAGGCAGGAAGTGGAATTTCTCATTCTGATAACATCTCTTTAACTGGT
GCAGTTTTCTTTGGACTTGCTTTTTCCTTTGTGACCATTTATTTAGTTGG
TAAACGGTGGATAGAAGGACTTCGAGAATCTAAAGGCAGGCGTGGTTACA
CTCGTATTTCCTATCTTCTAAATGGAGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00001062-exon-sc0000007-1491911889:1253534..1254216 | TCONS_00001062-exon-sc0000007-1491911889:1253534..1254216 | Clytia hemisphaerica | exon |
| TCONS_00001062-exon-sc0000007-1510915933:1253534..1254216 | TCONS_00001062-exon-sc0000007-1510915933:1253534..1254216 | Clytia hemisphaerica | exon |
| TCONS_00001062-exon-sc0000007-1575043694:1253534..1254216 | TCONS_00001062-exon-sc0000007-1575043694:1253534..1254216 | Clytia hemisphaerica | exon |
| TCONS_00001062-exon-sc0000007-1491911889:1254453..1254754 | TCONS_00001062-exon-sc0000007-1491911889:1254453..1254754 | Clytia hemisphaerica | exon |
| TCONS_00001062-exon-sc0000007-1510915933:1254453..1254754 | TCONS_00001062-exon-sc0000007-1510915933:1254453..1254754 | Clytia hemisphaerica | exon |
| TCONS_00001062-exon-sc0000007-1575043694:1254453..1254754 | TCONS_00001062-exon-sc0000007-1575043694:1254453..1254754 | Clytia hemisphaerica | exon |
| TCONS_00001062-exon-sc0000007-1491911889:1255052..1255109 | TCONS_00001062-exon-sc0000007-1491911889:1255052..1255109 | Clytia hemisphaerica | exon |
| TCONS_00001062-exon-sc0000007-1510915933:1255052..1255109 | TCONS_00001062-exon-sc0000007-1510915933:1255052..1255109 | Clytia hemisphaerica | exon |
| TCONS_00001062-exon-sc0000007-1575043694:1255052..1255109 | TCONS_00001062-exon-sc0000007-1575043694:1255052..1255109 | Clytia hemisphaerica | exon |
| TCONS_00001062-exon-sc0000007-1491911889:1255387..1256195 | TCONS_00001062-exon-sc0000007-1491911889:1255387..1256195 | Clytia hemisphaerica | exon |
| TCONS_00001062-exon-sc0000007-1510915933:1255387..1256195 | TCONS_00001062-exon-sc0000007-1510915933:1255387..1256195 | Clytia hemisphaerica | exon |
| TCONS_00001062-exon-sc0000007-1575043694:1255387..1256195 | TCONS_00001062-exon-sc0000007-1575043694:1255387..1256195 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000007 | supercontig | sc0000007:1253534..1256195 + |
Blast
The following BLAST results are available for this feature:
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