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TCONS_00001058 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001058
Unique NameTCONS_00001058
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1976

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001058 ID=TCONS_00001058|Name=TCONS_00001058|organism=Clytia hemisphaerica|type=transcript|length=1976bp
CGAAAACTATgaaaaattacctaaattttgagccatagatgaaaaaattt
gacctGACCCAACCTGaaccaaccttgaaaactaatttgaagaacaGCTT
CCAAAGAAAAAGATCAATGAGAGAACACCCATTTATATGTGtgggaattt
tttttactttacgtGTAATTAAAGCCTAACAAATCAAAGCGCTATCTTGG
GAatcaaaatgacaaattttggttggttgattttggctgctgcacaaata
ttttgtttcaagctttcaagttttaattatatATAACTGTCTTTGGAACT
TGATTGAGGTAACTCTCTTCTTTGATGCTGCAAATaaatcctgtagatga
ctgatgttgtttttattgatagcttgatttcctagtttGACTAACTGACA
AGTAGTCATTATCTTTTGTTGGCAAAGGAAGGTCGACGTTTGAAAATACT
TTATCATGCAGACTGAAGACACTTCTCCTATGGACAAAAAACATGTTGTA
AGAGACATTGTAAGGCTACATATCGGTGTCAGACACAAAGAACTTACTTA
AAAATAATAGAGATGCTCAAAATTGAGACACAGGTAAATTCCAAAAGAAA
TAACCATCATTGCTCTGAAAATGATCATAAAATAAATTGGgggttgaaaa
aaattaaaagatgtTAAATCTCTCTAATGTAGCTAAACATAAATCTTGCA
ATCCAAGCCACAATAATCTTCCAACGTGAATATCACTGAGTCAATAAACA
CAACaatttatttagatattatatgAACTTTTTAAAACACTTTAAACTTT
AGAGTTAAGGAAAAATCACCTACAATTAAAATAATTCTTTCCTTTTTTAG
GGCAGAATGTGAAAGTCAAGTAAAGGGTTTTCATGGCGCAAGGTACAAAA
AGTTTGGCTCAGAACAAGAAGCACAAAGTTTCATAGATGAGGTTTCATCC
AGCAATTCTTCACTTGGTGTTAGAAGAACACAGACTTTTAAAGCAAAGTC
ACAAAACACTGcctTTCCAGGATCTGTTACAGCTCTATCTAAAAGAACCA
AATTGATAGAAGCTAGAAGTTTGTCAACACAAGCCTCGTCCAGCTCCACA
TCCTCCAAGCCCGTTGTTTATACAGATGGTTGCTGCCGTGGTAACGGTAG
AAGTGGAGCCATCGGTGGAATCGGTGTTTATTGGGGACCAGATCATCCTA
GgaatATAAGTGAACCGTTACTAGTAGACGAGCCAACTAACCAGAAAGCT
GAACTGGAGGCCGCCATCAGAGCGATTGATTGTGCGATAGGAATGGGTCT
GGATGATCTTGAATTACGAACAGATAGTACATACACCATCAAATCAATGA
CGGAATGGATTCCACGTTGGGAGCGGAACGGATGGAAAACTTCCAAAGGA
ACTGATGTTCTGAACAAAGAACAAATGATCCGGTTGAACGATTTATGTAA
ACGGATTGATATAAAATGGACGCACGTTCGCGGACACAAAGGTATCCATG
GCAACGAAGAAGCAGATCGATTGGCCAATGAAGGAGCAATGAAAACTTGA
AAACGAAGCGTGGTTGTAAAACGGCGACTAACGAACGTGGGATTTTCCTT
AGTGTCACTCATGGTGTAATGTTGGAAATTCTGTCaaattccaaataaat
aaatgaagaaGGACTCGCCTACTTTCAGTTATGTTACCTGACAGCTTCAA
ATGACAATGTTAAAGacaatttaaacagtattactTGTAAAAGGACATTA
CAGTGTGCCCGAAAGAAAATGGGACGGATTTTATAAATTTAGTatcttta
tttatttaaattttgttcGACTTACCTACCTAGAAACACTGTAGTTTTTG
TTAATGTTTACCATTTGCAATACGGTGTTTTGTCCTCGTTGTGGACAATT
GTATATCATCCACAAATGCTCTGCtgagaaagaaaaacttttaaataaca
ATAATATAGGAACTTTAGCATCATCG
Run BLAST on NCBI

transcript from alignment at sc0000007:1112382..1116755+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001058 ID=TCONS_00001058|Name=TCONS_00001058|organism=Clytia hemisphaerica|type=transcript|length=4374bp|location=Sequence derived from alignment at sc0000007:1112382..1116755+ (Clytia hemisphaerica)
CGAAAACTATgaaaaattacctaaattttgagccatagatgaaaaaattt gacctGACCCAACCTGaaccaaccttgaaaactaatttgaagaacaGCTT CCAAAGAAAAAGATCAATGAGAGAACACCCATTTATATGTGtgggaattt tttttactttacgtGTAATTAAAGCCTAACAAATCAAAGCGCTATCTTGG GAatcaaaatgacaaattttggttggttgattttggctgctgcacaaata ttttgtttcaagctttcaagttttaattatatATAACTGTCTTTGGAACT TGATTGAGGTAACTCTCTTCTTTGATGCTGCAAATaaatcctgtagatga ctgatgttgtttttattgatagcttgatttcctagtttGACTAACTGACA AGTAGTCATTATCTTTTGTTGGCAAAGGAAGGTCGACGTTTGAAAATACT TTATCATGCAGACTGAAGACACTTCTCCTATGGACAAAAAACATGTTGTA AGAGACATTGTAAGGCTACATATCGGTGTCAGACACAAAGAACTTACTTA AAAATAATAGAGATGCTCAAAATTGAGACACAGGTAAATTCCAAAAGAAA TAACCATCATTGCTCTGAAAATGATCATAAAATAAATTGGgggttgaaaa aaattaaaagatgtTAAATCTCTCTAATGTAGCTAAACATAAATCTTGCA ATCCAAGCCACAATAATCTTCCAACGTGAATATCACTGAGTCAATAAACA CAACaatttatttagatattatatgAACTTTTTAAAACACTTTAAACTTT AGAGTTAAGGAAAAATCACCTACAATTAAAATAATTCTTTCCTTTTTTAG GGCAGAATGTGAAAGTCAAGTAAAGGGTTTTCATGGCGCAAGGTACAAAA AGTTTGGCTCAGAACAAGAAGCACAAAGTTTCATAGATGAGGTGACGAAT TAAACTAAAACCTCTTTTTATCAGGGAGGCtcttgatattttttaaatta taacTGACTACTTGATAATTGAGTTGCTATTAGTGGGGTTACAGGTTTTG AACTTGTTTTGAAGGTTGTGGAGAGGAACAAGGGGTTATTTAAAGCTCAA AGGAATTCTTTATTTTaaatagatttaaaaagatatGTCATATTAAAATA CTCCTTTTCAAAGGTTTCATCCAGCAATTCTTCACTTGGTGTTAGAAGAA CACAGACTTTTAAAGCAAAGTCACAAAACACTGGTAAGAATTTTCTCCTC CATACATCTGTTGATAGTTCTGTTGGTATGCTCAAGAGAAACATTGTAGC AAAGGTTTGGCATGctatcttctcaaaaatattagAAAGTTATAtcttga tgggttaaaatcaaccttcttcccaaatATAATTTTCGCTGTcgaagaat tcttattcagttGCTCTTCATAACTTTCTGTTTACGATAGCGGCTTCCtg tcactttcaaaacttttcaaagtcttcCAAAGTCACACTCGAATGTCCAG CCACGATGGCCAGCCACGATGGCTAAATAGATCTTATTTATAATTCTTCT AAGCCATTTacttaattgtggttaaaaattgcaataCAATGTTATCTTCT TTCTCCTTTCTTTCATAGAATGAAAATCGTATCATTATTTCGGCAGCTAT CTTTTTTCCTTTAGAGTTTTTTATATGTATAGTGATTCGCTGGATTGGGA CATGCAGCGTGCAACACTGCGCATACGGCTATAGATAATGcttctttcaa attcaatttgtGTTCTACACCATTATATGTAATGTCTTTACAATAGTACA TAATATTatgaattgaaagaaaaataatcacaatcaaattttatttttta gcctTTCCAGGATCTGTTACAGCTCTATCTAAAAGAACCAAATGTAGGTA CTCAAAAAATTTGCATTCCCTATAAGGATACCCTTATTAAGCTCGACcaa tatatataaaaataaaaattagaaaatatttaGATGTTGGAATATTTGAA TATTTAGTTGGGATTTCTTCGTTCATGACTATACAATAAGTAGCtaattt taaagctattttctcCTTTCAGTGATAGAAGCTAGAAGTTTGTCAACACA AGCCTCGTCCAGCTCCACATCCTCCAAGCCCGTTGTTTATACAGATGGTT GCTGCCGTGGTAACGGTAGAAGTGGAGCCATCGGTGGAATCGGTGTTTAT TGGGGACCAGATCATCCTAGGTACGCAATAATGTGATAATATTTTGGTTG AATGTATCCAGGAGTTGATTCTTTGCGTTTGTTTTGTTACCATATCGTGT TTTGTGTTGACATTTAAAAATAAACTATTTCCTTTTCTTAGGGGtttcct tttttgatttttttcaggaatATAAGTGAACCGTTACTAGTAGACGAGCC AACTAACCAGAAAGCTGAACTGGAGGTTAGATGAGTACTGACATTATTTA ATTCACGAATAGACCTTGTTCTCCACGTCAATGTGTAGAAATCATTATTT CAATGGATATGGCgatgtcaatattttttataggggtcagtagcgtagac aggcgTGAAGGAACAATTgcttaggagagcagatttttacgaCGAAGCAC TTACCTACCActtacttgtggtataaaaacaTAGTTACTGTGCTGTTTAA ATCTCCTCTCCTAAACAAATATTCCTTCatccctgtctacgctactagGG GTAATTAATTGTTTGATTGCATGATAAATTGCGTGGTGGATTTTAATCGT AGCTGTTTAGAACATGCGGATCTTCACACTCCCCTGTATGTATGAGAAAG GAGTTGTCAGCCCAAGTCCGCCATAACTTTTCAGGCTTTAAGCTTTTAGG GGGTTAACAAAGTTTAAGTTAAAACATGTAGTATATCTGATATTGGTTAC AGAATGTGGTATCTTCTAACATAAATGTCAATGCAATGAGTCGGGGGTTT TTATAGGGAGATTAGGGAGGCTTTTCACACTATGGCTGTTATATAATATT CCATTACTTTGTATCCTTCTTTTGCAATATCCAGGCCGCCATCAGAGCGA TTGATTGTGCGATAGGAATGGGTCTGGATGATCTTGAATTACGAACAGAT AGTACATACACCATCAAATGTAAGAAAATCTCATCATATTTATGACAGTG AAAGTCCTTATGAATTGCTTCAAACTCATCAAAACTCAATCTCAAATTGT TGCTGCTAAATTGTACCACGTTGATCTCGACATCATAAGGTAGTATGAAA CACCTTAAGatattgataatttgataaGCTGTAGACCTTTGGTTTAACAA ATGGTATAGACTTCTTCAAAAGTACAAAGGTTTTGTATCTCTTCTTTCCA GCAATGACGGAATGGATTCCACGTTGGGAGCGGAACGGATGGAAAACTTC CAAAGGAACTGATGTTCTGAACAAAGAACAAATGATCCGGTTGAACGATT TATGTAAACGGATTGATATAAAATGGGTGAGGAGTTTTgcataaaaacaa ttattctacaaaaattcaaaattccaaAGGGGTTTAAACCTGCATTTCCA GCCACACAGGGATGGACCTcatcaacagggggtatacggtttttttctgg NGGgtttacagcatttccagccacacagtgatggacctcctcaacagggg tatacgttttttttctgcaaaagcccaagttgaaaaattgaaagaaccAG GACTCTTGGCATGATGCTTGGGTTCAGTTGCACACCCTTtcgatttcctt ttttttaatcaaaaagcCCTGACCAGGACTTATTAGGACCTCCTATTAGC TAACTTTGAAGCAGATTCACACTATTTTTATGGTTCGTTTGCTGACTTTA ATACACCGTTCATTTAGACGCACGTTCGCGGACACAAAGGTATCCATGGC AACGAAGAAGCAGATCGATTGGCCAATGAAGGAGCAATGAAAACTTGAAA ACGAAGCGTGGTTGTAAAACGGCGACTAACGAACGTGGGATTTTCCTTAG TGTCACTCATGGTGTAATGTTGGAAATTCTGTCaaattccaaataaataa atgaagaaGGACTCGCCTACTTTCAGTTATGTTACCTGACAGCTTCAAAT GACAATGTTAAAGacaatttaaacagtattactTGTAAAAGGACATTACA GTGTGCCCGAAAGAAAATGGGACGGATTTTATAAATTTAGTatctttatt tatttaaattttgttcGACTTACCTACCTAGAAACACTGTAGTTTTTGTT AATGTTTACCATTTGCAATACGGTGTTTTGTCCTCGTTGTGGACAATTGT ATATCATCCACAAATGCTCTGCtgagaaagaaaaacttttaaataacaAT AATATAGGAACTTTAGCATCATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000598XLOC_000598Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001058-exon-sc0000007-1491911889:1112382..1113322TCONS_00001058-exon-sc0000007-1491911889:1112382..1113322Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1510915933:1112382..1113322TCONS_00001058-exon-sc0000007-1510915933:1112382..1113322Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1575043694:1112382..1113322TCONS_00001058-exon-sc0000007-1575043694:1112382..1113322Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1491911889:1113545..1113614TCONS_00001058-exon-sc0000007-1491911889:1113545..1113614Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1510915933:1113545..1113614TCONS_00001058-exon-sc0000007-1510915933:1113545..1113614Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1575043694:1113545..1113614TCONS_00001058-exon-sc0000007-1575043694:1113545..1113614Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1491911889:1114233..1114274TCONS_00001058-exon-sc0000007-1491911889:1114233..1114274Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1510915933:1114233..1114274TCONS_00001058-exon-sc0000007-1510915933:1114233..1114274Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1575043694:1114233..1114274TCONS_00001058-exon-sc0000007-1575043694:1114233..1114274Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1491911889:1114454..1114601TCONS_00001058-exon-sc0000007-1491911889:1114454..1114601Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1510915933:1114454..1114601TCONS_00001058-exon-sc0000007-1510915933:1114454..1114601Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1575043694:1114454..1114601TCONS_00001058-exon-sc0000007-1575043694:1114454..1114601Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1491911889:1114749..1114806TCONS_00001058-exon-sc0000007-1491911889:1114749..1114806Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1510915933:1114749..1114806TCONS_00001058-exon-sc0000007-1510915933:1114749..1114806Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1575043694:1114749..1114806TCONS_00001058-exon-sc0000007-1575043694:1114749..1114806Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1491911889:1115416..1115500TCONS_00001058-exon-sc0000007-1491911889:1115416..1115500Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1510915933:1115416..1115500TCONS_00001058-exon-sc0000007-1510915933:1115416..1115500Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1575043694:1115416..1115500TCONS_00001058-exon-sc0000007-1575043694:1115416..1115500Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1491911889:1115733..1115857TCONS_00001058-exon-sc0000007-1491911889:1115733..1115857Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1510915933:1115733..1115857TCONS_00001058-exon-sc0000007-1510915933:1115733..1115857Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1575043694:1115733..1115857TCONS_00001058-exon-sc0000007-1575043694:1115733..1115857Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1491911889:1116249..1116755TCONS_00001058-exon-sc0000007-1491911889:1116249..1116755Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1510915933:1116249..1116755TCONS_00001058-exon-sc0000007-1510915933:1116249..1116755Clytia hemisphaericaexon
TCONS_00001058-exon-sc0000007-1575043694:1116249..1116755TCONS_00001058-exon-sc0000007-1575043694:1116249..1116755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:1112382..1116755 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.636126 0.723289 0.653499 1.11629 0.566962 0.726081 0.742316 0.849833 0.506988 0.438545 0.436775 1.34908 0.135912 0.449245 0.290227 0.581583 0.674477 0.199515 0.151478 0.705114 0.881473 0.936388 0.454837 0.236871 0.312419 0.33488 0.508838 0.382307 0.302624 0.315632
Blast
BLAST of TCONS_00001058 vs. Swiss-Prot (Human)
Match: RNH1 (Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.317e-43
Identity = 100/238 (42.02%), Postives = 134/238 (56.30%), Query Frame = 3
Query:  855 ECESQVKGFHGARYKKFGSEQEAQSFI-----DEVSSSNSSLGVRRTQTFKAKSQNTAFPG----SVTALSKRTKL-IEARXXXXXXXXXXXXXKPVVYTDGCCXXXXXXXXXXXXXVYWGPDHPRNISEPLLVDEPTNQKAELEAAIRAIDCAIGMGLDDLELRTDSTYTIKSMTEWIPRWERNGWKTSKGTDVLNKEQMIRLNDLCKRIDIKWTHVRGHKGIHGNEEADRLANEGA 1538
            EC +QV  F  AR+KKF +E EA +F+      EVS  + +   + ++   +K       G    S    +K  K  +E     ++ + S      VVYTDGCC  NGR     GIGVYWGP HP N+    L    TNQ+AE+ AA +AI+ A    ++ L L TDS +TI  +T W+  W++NGWKTS G +V+NKE  + L  L + +DI+W HV GH G  GNEEADRLA EGA
Sbjct:   45 ECRAQVDRFPAARFKKFATEDEAWAFVRKSASPEVSEGHENQHGQESEAKASKRLREPLDGDGHESAEPYAKHMKPSVEPAPPVSRDTFSYMGDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVG-IRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQWMHVPGHSGFIGNEEADRLAREGA 281          
The following BLAST results are available for this feature:
BLAST of TCONS_00001058 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNH14.317e-4342.02Ribonuclease H1 OS=Homo sapiens GN=RNASEH1 PE=1 SV... [more]
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