TCONS_00001049 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001049
Unique NameTCONS_00001049
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001049 ID=TCONS_00001049|Name=TCONS_00001049|organism=Clytia hemisphaerica|type=transcript|length=1340bp
ACTTTCTCCACACAACCAACAACACCATGAAGTCATTCACTATTTTCGCT
TTCTTGGCTTTTGTAGCCTTTGCTTCCGCTGACTTCGCTTTCGAAGATAT
GTATGATGGTGGATCAGGTGATGTCAGTTGTTTAAAAGAACGAAATGAAT
GTTTGGAGAGCGCTCATGGTATCTTTGGACGAATCAAATGTTTTGGTGCT
TACACCAAATGTGTTTCTCAATGTGCTGGTGCTTGTGGTATGGACTACCT
TGAGTGCAGAAGGAACAAAGGATATCTCCGACATTGCTTGAAAGCACACA
GTCGATGCATGTACCAATGTCAAAAGTGAATAAACaaatagatttcaaaa
ataatgtcttttttcaaacattgaaaTTCCCTATACAAAATAGCCCGTGT
ATAAAAACTAAAAACGCACTATACCCTATACGGATAAAATTCTCTTGTAG
CTTGCTAATTTTTTATGACAGGAAACCTGGTTTTCCAGCGGTGCGTTTGA
GGAGAGGTATCCTTGCTGTTAAAAAGAGTTACTTCGAACATCTTAAAACT
TTTTCTCCATAATACAAAAATTGCTAAGCTTGAAATCCCGAGGTTTCTCA
AAACATACGGGCCCAAAATGAGCTATACTCAAAATAGAGAGATTAAAGAC
CTTTCAAACGTTAACTTTGAGAGAAGGATTGGCCGATGAGACAGGCACTA
TGTGCTTTAATTGTCTTTGACGACTTTCTAACCCTACCAGACAATAATAG
AAAGTGGGAAAACAAATCTACGCACAACGACGCAATAAGAAATAATCATC
TAATAAATAAAGCGGTTAtataaaatttaatatttacAAGNTACGCACAA
CGACGCAATAGGAAATAATCATCTAATAAATAAAGCGGTTAtataaaatt
taatatttacAAGCATAATATATTACAAATCCCACTACAAAAATATTCCT
TATTAAAGTCTCGAGCTACTAAAAGTCTTAAATCCTCTAGTTTTTCGGAC
TCGTAAGCTCTTCAATGATGCGTGGGTCAAGAAAAGTCCCTTTTGTACGA
AAAAAGCTTTTGTATATAAAATGTACTTCGATAAATGGCGGACTTTACGC
GATCCAAAGCCTCTTCTCAGCCACAGTACTCATAAGCTTGTAATTGATGA
TCGTTTCATTTCATCTAAGCTTGAAATCATTCCAAAGTCGATATTTTTCA
ACTTGGTGTTGGTATGTTCGATTTAGCGATGAGTTCTCGTTCAAGTTTCC
CTCCTCCCTTGGTATCACTTAACCATTCATCGCACGGAAATTCATATGAA
CCACCTTCTTCGTCCGTCACTTGTACCTGGAAGGAGAAAA
Run BLAST on NCBI

transcript from alignment at sc0000007:975982..978961+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001049 ID=TCONS_00001049|Name=TCONS_00001049|organism=Clytia hemisphaerica|type=transcript|length=2980bp|location=Sequence derived from alignment at sc0000007:975982..978961+ (Clytia hemisphaerica)
ACTTTCTCCACACAACCAACAACACCATGAAGTCATTCACTATTTTCGCT
TTCTTGGCTTTTGTAGCCTTTGCTTCCGCTGACTTCGCTTTCGAAGGTAA
GATTCAGTCAAAACACGCACGATGGTGTTTTTCACAAACTAAACCTTCAA
GTCCAGATGACATACGAGGGCCACCAACGCTCAAATAGACCGACATTATT
TCATTCGAGCACCACAACACTAACAGAATATAAGGGGCTTACACCGAAAC
ACTTTCAGACCTGAAGCACCCCCTTTTCACttcaaatgttttattttaac
tttcgcaaatttaattTTAGATATGTATGATGGTGGATCAGGTGATGTCA
GTGTAAGTCAGCTCTTCATAATTAAgcggaattaattttggcgaacgttc
cctttttgttcaatattttagctggAAAAAGagtaaattgaaagaaaatt
aaatttagcgagaacttattttggcgaatgacctataaatttaaatttgg
cggaaagaaattttggcgaatttggcgaaatttttaggcaattctccaaa
ttcaccaaaatctCTTCCTCTTTGGAATATGAACAGGTTTAGGGGCAAAC
CTACACATTTAGGCTGAAGAGTATCAACCTGGAGAAACCTTTCTGGTGGG
TAGGGGATCCACCTGGCAAATAACAGGAATTTATTGTGTAGTGTTttggg
aagaaaaaaattataattaaattaACTGGAGTGGAATAGTAATTCTTACT
CTAAACGAATCTTCCGCTTTTTCTTTACACCTTGAATATCATTAGCTCTC
TGCGAGAGTCTTATGGAATAGCCTAAAAGATCAGTGAAAACTCGAAAGTC
TTGATGTAGACCTTTGAAGCAAATTGTGAAAAATATCTTATTTCTTGCAG
TGTTTAAAAGAACGAAATGAATGTTTGGAGAGCGCTCATGGTATCTTTGG
ACGAATCAAATGTTTTGGTGCTTACACCAAATGTGTTTCTCAATGTGCTG
GTGCTGTAAGTGTTTGAAAATTATCTCTGTTGCCAGACCATCAACCTGGT
TTTATGTGGATAGGGAATGTACTCTCCGGTGCCTAACAAACgtgcctttt
tttaattttcgtttTTCCCACTACTCGAAAATtcatttatgaaaatattt
tctttaaatttaggAATTTAGCCTAAACTTCCCATAGCTTTCCCACATTA
GAATCTCCACGTTTATCAGCCAGCCAGGAGGAGTTAGTTCTCCAAATTAA
TGCAATTCCATCCATTTGGGAGATTAAGTAGACGTAGCGCCCTTTGAATA
TTAGAAATGCTTctcagtggaacctctaattagcggacaccatcggggaa
aggggttagtgtctgctaattagaagtgtccgctttttagaaacttttga
tctcggagctccaattttgaaattaggccatcccagggtgtcgagAATAC
AAAATACGGACTTGAAGTatcagtgatttatgatttctttggcccatCTA
AATTtgttgaatgggtcaagggaaaactggaaatttgtagaaataatttg
aataataagactacTAAGTGCTTGaactaaaaatatctaaaataaattta
agacgtctgtgacccgtttaatgttcaatgtccgctaattggagagctaa
aataggggttttgaccATTTCGTGCGATAAAATTTGTCTGCTAATCAGAA
aatccgctaattgagtgtccgcctttagaaacttttttatgaggattaga
ctaggaaacggccgggaaaaatgaaattgtccactaatcagaggtgtccg
ccttttagagtgtccgttaattagaggttttactgtatgcGATTGATGAa
tcaaattttcctcttttttataGTGTGGTATGGACTACCTTGAGTGCAGA
AGGAACAAAGGATATCTCCGACATTGCTTGAAAGCACACAGTCGATGCAT
GTACCAATGTCAAAAGTGAATAAACaaatagatttcaaaaataatgtctt
ttttcaaacattgaaaTTCCCTATACAAAATAGCCCGTGTATAAAAACTA
AAAACGCACTATACCCTATACGGATAAAATTCTCTTGTAGCTTGCTAATT
TTTTATGACAGGAAACCTGGTTTTCCAGCGGTGCGTTTGAGGAGAGGTAT
CCTTGCTGTTAAAAAGAGTTACTTCGAACATCTTAAAACTTTTTCTCCAT
AATACAAAAATTGCTAAGCTTGAAATCCCGAGGTTTCTCAAAACATACGG
GCCCAAAATGAGCTATACTCAAAATAGAGAGATTAAAGACCTTTCAAACG
TTAACTTTGAGAGAAGGATTGGCCGATGAGACAGGCACTATGTGCTTTAA
TTGTCTTTGACGACTTTCTAACCCTACCAGACAATAATAGAAAGTGGGAA
AACAAATCTACGCACAACGACGCAATAAGAAATAATCATCTAATAAATAA
AGCGGTTAtataaaatttaatatttacAAGNTACGCACAACGACGCAATA
GGAAATAATCATCTAATAAATAAAGCGGTTAtataaaatttaatatttac
AAGCATAATATATTACAAATCCCACTACAAAAATATTCCTTATTAAAGTC
TCGAGCTACTAAAAGTCTTAAATCCTCTAGTTTTTCGGACTCGTAAGCTC
TTCAATGATGCGTGGGTCAAGAAAAGTCCCTTTTGTACGAAAAAAGCTTT
TGTATATAAAATGTACTTCGATAAATGGCGGACTTTACGCGATCCAAAGC
CTCTTCTCAGCCACAGTACTCATAAGCTTGTAATTGATGATCGTTTCATT
TCATCTAAGCTTGAAATCATTCCAAAGTCGATATTTTTCAACTTGGTGTT
GGTATGTTCGATTTAGCGATGAGTTCTCGTTCAAGTTTCCCTCCTCCCTT
GGTATCACTTAACCATTCATCGCACGGAAATTCATATGAACCACCTTCTT
CGTCCGTCACTTGTACCTGGAAGGAGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000594XLOC_000594Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001049-exon-sc0000007-1491911889:975982..976077TCONS_00001049-exon-sc0000007-1491911889:975982..976077Clytia hemisphaericaexon
TCONS_00001049-exon-sc0000007-1510915933:975982..976077TCONS_00001049-exon-sc0000007-1510915933:975982..976077Clytia hemisphaericaexon
TCONS_00001049-exon-sc0000007-1575043694:975982..976077TCONS_00001049-exon-sc0000007-1575043694:975982..976077Clytia hemisphaericaexon
TCONS_00001049-exon-sc0000007-1491911889:976302..976333TCONS_00001049-exon-sc0000007-1491911889:976302..976333Clytia hemisphaericaexon
TCONS_00001049-exon-sc0000007-1510915933:976302..976333TCONS_00001049-exon-sc0000007-1510915933:976302..976333Clytia hemisphaericaexon
TCONS_00001049-exon-sc0000007-1575043694:976302..976333TCONS_00001049-exon-sc0000007-1575043694:976302..976333Clytia hemisphaericaexon
TCONS_00001049-exon-sc0000007-1491911889:976882..976986TCONS_00001049-exon-sc0000007-1491911889:976882..976986Clytia hemisphaericaexon
TCONS_00001049-exon-sc0000007-1510915933:976882..976986TCONS_00001049-exon-sc0000007-1510915933:976882..976986Clytia hemisphaericaexon
TCONS_00001049-exon-sc0000007-1575043694:976882..976986TCONS_00001049-exon-sc0000007-1575043694:976882..976986Clytia hemisphaericaexon
TCONS_00001049-exon-sc0000007-1491911889:977855..978961TCONS_00001049-exon-sc0000007-1491911889:977855..978961Clytia hemisphaericaexon
TCONS_00001049-exon-sc0000007-1510915933:977855..978961TCONS_00001049-exon-sc0000007-1510915933:977855..978961Clytia hemisphaericaexon
TCONS_00001049-exon-sc0000007-1575043694:977855..978961TCONS_00001049-exon-sc0000007-1575043694:977855..978961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:975982..978961 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0723641	0	0	0	0.0481935	0.0510692	0.404083	0	0.0340877	0	0	0.0287046	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001049 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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