TCONS_00001048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001048
Unique NameTCONS_00001048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001048 ID=TCONS_00001048|Name=TCONS_00001048|organism=Clytia hemisphaerica|type=transcript|length=272bp
TTACGCAATAACCCAATATTGGTGAAGAATACAACATGGGAACATGAATG
GTGTAATAAATTATCATGATTCCACTGATTCCAATGGCTCTGGTAACTTA
ACGTGCAGCGAGAAATCAAACGAGTGTTGGTCGAAAGCGAAACATCTTGC
AGACCGAGTCACGTGTCAAATCGGACATGCCAAGTGTAAAGCCAAGTGCA
AATATGAGtGTGGTTTGGCCTATGATGCTTGCACCGGATTGACCGGAGCA
TTTATACACTGTTTGTCAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000007:967723..969670+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001048 ID=TCONS_00001048|Name=TCONS_00001048|organism=Clytia hemisphaerica|type=transcript|length=1948bp|location=Sequence derived from alignment at sc0000007:967723..969670+ (Clytia hemisphaerica)
TTACGCAATAACCCAATATTGGTGAAGAATACAACATGGGAACATGAATG
GTGTAATAAATTATCATGGTAATGTGATGACGTATTCCTTATTTCCTGTC
TTGAAAATAGTAAATAAGAAAAATTGAGCCAAATACAGTAAAAGTAATAT
CTGGTAATATCGATTAATTAAAAAACTGTTACTAATGGTATCATTTCCTT
TTATAGATATTATTACCTCAATTTTCGTTTGGAGTTTAgattaaaattca
taaaatttaatCAGTTTGCCAGCTGTCAACCTCGTACCCAGGGCGATAAG
CTTTCTGATATTAGATAGGACGCTTAGACGTAACAGTGAGCTTCCTATTT
GCCTCTCATCTAGACTAGCAACTATATTTTCCCGCGCGGCCGCTGACTGT
TCGCCATGGAATCGAGGTTGGCCAGCTGTATCTATGTTTGAATGTTTTAT
GAAATGAAcccggggggcactcgatctgaaaacgaccatacgttcggccc
aaaatttggcttctaaaatcggacccttacagtgcagtgaatttccatga
aaaatcatacccttacagtgcactttttcaaaatttctcgcccgtaaggg
cgaatttttgcacttttccaagaaaatgtggaatttttcctccaaaattg
accaattttgtgccaatttaccaaaaaattggccttttatcacaatttcc
tacccttacagtgcagatcagtgcagttttgtaatttcctacccttacag
tgcagatcagtgcagttttgtaatttcctacccttacagtgcagatcagt
gcagttttgtaatttcctacccttacagtgcagatcagtgcagttttgta
atttcctacccttacagtgcagatcagtgcagttttgtaatttcctaccc
ttacagtgcactagctgaactatgaaaaaacctacccttaagggccgatc
GGCTGGTAGGTCATTTTCCTtgagggcccccccccccctccccggggaaa
tgaatcattaaaaataaacataaaacaGCAATAAATCGTCTTCAAACACA
AACATTTTCTCTCTGGtgaaattctaaaaactttatcaCAGTTCAGCAAC
CATGTATTCGTTGAAAGTCTGCATCTTTTTGGCTTTTGTTACCCTCGTCA
TTTCTCAGGTTAGGATGATATATGCTCGTTGTATGTTAGTGTATACAGAT
ACTTATTGTGCGTTTCTTTTTGGTTGTGGTAGTTGAAAAGCTGGACTGAA
ATTTCGATGAGCATGTTTCATTTTCTCGTTTTAGATTCCACTGATTCCAA
TGGCTCTGGTAACTTAACGGTGAGTTTTGAAGAGAAATTCTCCTTGCAAA
GTGAAACTTCCGTCGATTAATGTTGGAATGACTAATAATCAAAATCGTTG
AAGTTTGTGATGATTATTACGGATATGTAGAAGAGAGTTTTCAGTTCGTT
GAGCCCCCCTGAGCCGAACTTACACACTTAAACCCTTACTTTATATCATT
CATTGCTATTTTTTCTTGACACTTATTAGTGCAGCGAGAAATCAAACGAG
TGTTGGTCGAAAGCGAAACATCTTGCAGACCGAGTCACGTGTCAAATCGG
ACATGCCAAGTGTAAAGCCAAGTGCAAATATGAGGTAAATGTTAACAGCT
CTCTAAATACAAGATTTTTATGAGTCCATTTGACAGTCATAACTCAAAAA
AAGTTCGActttggtcaaattttcaattgcAACATCGCCTGGCCGGCAAA
TTTTTGACCAAGAACGCAATCGATACTATCTCGCACCTTTTTCCAAAGTT
TCAAAACACGTATTTgttaaaatgaaagtgaaacaTGGGTGTTATGGTGT
ATTCTAAAGGTAcattctttttcttgtttttcagtGTGGTTTGGCCTATG
ATGCTTGCACCGGATTGACCGGAGCATTTATACACTGTTTGTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000593XLOC_000593Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001048-exon-sc0000007-1491911889:967723..967790TCONS_00001048-exon-sc0000007-1491911889:967723..967790Clytia hemisphaericaexon
TCONS_00001048-exon-sc0000007-1510915933:967723..967790TCONS_00001048-exon-sc0000007-1510915933:967723..967790Clytia hemisphaericaexon
TCONS_00001048-exon-sc0000007-1575043694:967723..967790TCONS_00001048-exon-sc0000007-1575043694:967723..967790Clytia hemisphaericaexon
TCONS_00001048-exon-sc0000007-1491911889:969007..969041TCONS_00001048-exon-sc0000007-1491911889:969007..969041Clytia hemisphaericaexon
TCONS_00001048-exon-sc0000007-1510915933:969007..969041TCONS_00001048-exon-sc0000007-1510915933:969007..969041Clytia hemisphaericaexon
TCONS_00001048-exon-sc0000007-1575043694:969007..969041TCONS_00001048-exon-sc0000007-1575043694:969007..969041Clytia hemisphaericaexon
TCONS_00001048-exon-sc0000007-1491911889:969252..969356TCONS_00001048-exon-sc0000007-1491911889:969252..969356Clytia hemisphaericaexon
TCONS_00001048-exon-sc0000007-1510915933:969252..969356TCONS_00001048-exon-sc0000007-1510915933:969252..969356Clytia hemisphaericaexon
TCONS_00001048-exon-sc0000007-1575043694:969252..969356TCONS_00001048-exon-sc0000007-1575043694:969252..969356Clytia hemisphaericaexon
TCONS_00001048-exon-sc0000007-1491911889:969607..969670TCONS_00001048-exon-sc0000007-1491911889:969607..969670Clytia hemisphaericaexon
TCONS_00001048-exon-sc0000007-1510915933:969607..969670TCONS_00001048-exon-sc0000007-1510915933:969607..969670Clytia hemisphaericaexon
TCONS_00001048-exon-sc0000007-1575043694:969607..969670TCONS_00001048-exon-sc0000007-1575043694:969607..969670Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:967723..969670 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.550965	0	0	0	0	0	0	0	1.58313	1.72529	0.902786	3.13121	0	0.761081	0	0	0	0	0	0.674143	1.82449	0	0.645282	0	49.3459	49.2037	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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